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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0085200 |
| Transcript ID | LotjaGi4g1v0085200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan endo-1,3-beta-glucosidase; TAIR: AT5G24318.1 O-Glycosyl hydrolases family 17 protein; Swiss-Prot: sp|P52409|E13B_WHEAT Glucan endo-1,3-beta-glucosidase; TrEMBL-Plants: tr|G7JIQ2|G7JIQ2_MEDTR O-glycosyl hydrolase family 17 protein; Found in the gene: LotjaGi4g1v0085200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11222960..11227088) extracted from Lotus japonicus Gifu genome v1.2.
GTAATGGGTTTACATTTACATTTCACATTGGAATGAATGATGCTTAGTTTTTTTTGGTCATGAATCTTGTTTCATTGATT GAAAATGGGCCAAGCCCAGTTTGAACCTAAACATTGGAAAAATATGAAGAAAAAAAAAAACAATTTATTAAATTCCATTA TGAATAGATAGTCAATTTTAAAATCAGACAACCTCTACCTTGAAATCAATGATGGTGAGTTTGAAGTTTGAACCTGAACA TTGATGGCCCCATTGACTAGAATCTGAGATCCACTACATTCATAAATATCACACCACTACACCAACACAGCAACAACATT CCTCCAAAACCATGGCCCACCCATTTCACCTGCTTCTGCTTCTCCTCCCAACTTACCACCTCTTCCTCCTCCCCTTCGCC GCCTCCATCGGCGTCAACTACGGCACCGTCGCCGACAACCTCCCACCTCCCTCCACAGTAGCCACCTTCCTAAAATCCCA AACCACCATCGACCGCGTCAAAATCTTCGACACAAACCCCGTCATGCTCCGCGCCTTCGCCGGAACCAACATCGCCGTCA CAGTAACCGTCGGCAACGGCGACATCCCTAAACTCGCGAAGCTACCAGCAGCCCAGTCATGGGTCGCCAGCAACATCCTC CCCTTCCACCCCAAAACCACCATCAACCGCATCGCCGTCGGCAACGAAATCCTCGCCACCTCCGACAAAACCCTCATCGC ACACACTCTCCCCGCCATGGAAGCTCTCTACAAAGCCCTCCAACTCGCGAACCTCACCCACATCCAAGTCTCCACCCCTC ACTCCCTCGGCATCTTAACCTCCTCAGAACCACCCAGCTCGGCGGCGTTCCGCCGCGGCTACGACAAAACCATCTTCACC CCCATTCTCAACTTCCTCCGCCAAACAAACTCCCCATTCATGGTAAACCCATACCCATTCTTCGGGATCACGTCAACCCG ACCCGATACTCTCAACTACGCGCTGTTCAAACCGTTTCACGGCGTTTTTGACGCGGCAACCGGCGTGAACTACACGAACA TGTTCGACGCGCAGATGGACGCGGTGTTTTCTGCGATGAAGAAGGTTGGATATGGTGACGTGGAGTTGGTGGTGGCGGAA ACGGGTTGGCCGTCGGCGGGTGACCCGAACCAAGCGGGTGTGGGTGTGGACAATGCGGCGTCGTATAATGGGAATTTGAT TAAGCACGTGAGTTCTGGGAAGGGGACACCGTTGATGCCTAATAGAACGTTTGAGACTTTTATATTTTCTTTGTTTAATG AGAATTTGAAGGCCACGGTTTCGGAGCGGAATTATGGCTTGTTTAAACCTGATCTTACTCCTGTTTACGACGTCGGTCTT CTCACTCAACAGGTACTACCCGTTTTGTTTGTTTCTTCACTTAACTTTTTTTAAATGTGCATATCTAGTGTAGTGCAATG GCACATGGAGGGTGTTTTTATTCCCAAAAGAAAGAGCGAGACATAGAGTCTGATACAAGCCCACATGCTCATAATTTTGT TAAAGGGTTAATTAAGTTTTTGTCATTGTGCAATACATCAAGTTTGAAAATGATCAATCGTGGAAGTAAAATTTGGTTTT AGTTCGTATTTTTGGTAAACTATCTAGTTTTGATCTTGCTAGAAATGGTGGTTTAGTGACCCTAATCACTAAACTGATTG AGGCTATATAGGAAGGTTACCACACCACCACTTTCGGGGAGTACTAAAACTAAGCAATTTTCAGAATAGGCTTAAATATA TTTTTGGTCCCTCTAAAATTATGGTCTTTTGGTTTAGGTCATTCTATTTTTTTTTTATTATACACCCTAAAATTAAAAAT AATACTGAGGTTTCGGCCTCTGCTGTCACTTTACGTCATTTAGAGGGACATAAACCAAAGAACCATAATTTTAGAGAGAC CTAAAACATGAAAAAATTGAGTTTAGGTCCTTAAAATCATGATTTTTTTGGCTTAGGTTCCTCTAAAATCATAGTTTCTT GATTTAACTTGCTTTAAAATATGTCATGTCATTGTCCGTTAGGTAAAAGTAACGGTAGGGACTTATCCCTCCGTATTAGA TTTCAAAATAAGAGTGTATTACTAAAAAATTTATTTAGAGGAGCTTAAACCAAAACCCTAATTTTAAATTTTAAAGGGAC AAAAACATATTAAAGCCTTCAAAATATTAATAACTAAAACCAAACTTTATTTTGATTAGAGAGCATTTTCTAACTTCAAC AACATATTGTACGCTACCAAAAGCTTATTTAACCCCTTTTAAAACATAAAATGACATAACATATTGTACCTGTTTGAACG GCTTTTTACAAGATTCAGAAATGTTTGAATAATTAGTTTTAATAGTAGCATTGTTATTCAACGTGAACAGTGTGTAGCAT AATGAGGTTTAGACTTTAGTGGTTTAATTTACACTTTACAGTGTTAGCTATAGATAGGTTGATAGTATCTAACTTTATTG GATGTTGTGTAATTAATGCGCGTAACTGCAGGCAGCGGGTCCCACATCTGGCCCCACAGCTGGACCCACAGCGGCACCAG CAGAAGCACCGTCGTCAGGGTCGGGTGAACCGCCGTCGTCTTCAAAGTGGTGCACGGCGAAGCAGGGAGCAAGTGAAGCG GCGTTGCAGGCCAACATTGACTTCGCGTGCAGTACTAAAGGGGTAGACTGTGGGCCCATAAAGCAAGGTGGGCCATGCTT CAAGCCCAATACAGTGAGGGCCCACGCGTCCTTCGCCATGAACGCGTATTACCAGGCATCTGGCCGCCATGATACCGACT GTGATTTCGGACACACTGGAGTCGTCACTTCCATCAACCCAAGTGAGTAAAACTTTGACTTTTATTTTAAAGCAAATTTG ACCTTTTCCTCCATTATTTTATGTAGTAGAGTAATTTTTTTAAGTTATATTCAGTAACTTTTAGTGACAAGTCATTTTTT AAAAAAGTAATTCTAATTCTAATATAATTAGAATCTCTATTTTTTATGTGCAGCTATGTTACTTAACTGTAGGTTGTCAC AATAGCTAAGGGTTAATGTCGGGTAGTTTTAGGTATCTCAATAATATTTAACTAGTGTTATAAGTTAGTAGTCTTTTTAA AGACACATCAAAATATTATGAGGAGTGCTAGTAAGTAACAATATACTCTTTTAATGGCATATTTCAACACACTTATTGTG ATTGTTTTATTTTTTGAAATGTTAAAAATGTGTTCACTTTTCATAATCTAATGTGTTTAGAGTGTGTATTTAAAAGACTA TTGCTAGCACTTCTCAAATACTATTGAGATTTTAACCCTGAATGATCTTATCAACCTCTTTGATTACTGTTTTTAATCTA AATATATTTATCAGAAGAAGTATTTTTATGTTTATGTTCTTTAATGTACTTTTTGTATGAAAAAATGTCTTTATATTTTA CATTTAAAATTAACTTTTTAAATGTTATTTAATATATTTAAAGAAATATAAAGTAACTTCTTTTTTTAAAAAGAAAACTC TTAAAAAATAAAAGAGATCTTCAGCAATATGGCTGCGTTTTATTTTGCTATGATTAGTTATGCTATATGTTTTTCTTGTT GGAAGAGGAAAAGTCATTAAATTTGAATGTGAATATGGGCAGGTTATGAGACGTGTACGTATGTATCTTCAGCTGAAGGG CCCAAACAAAAGGTTAAAAATCCGGATACAGTAGGGTCACCAACAGGGTCACCAGTAGGGTCACCCAAACCTGCAAAGTC TAACGACGCTGGATCATTGAAGGCTTTCTTAGTTCATCTTCAACTTATCTGTTTCTGTTTTTTCTATCTTTAATGATTTT GTTCCTGTTAATATTATTGATTGATGTATAACATACTAAATTTATAAGCTTAGCCTTATTTTTGTTTAGTTGAATTAATT TAACCCTGGATACTTTGCGAAATAGGAAGGATATATATATAAATTAGACTATATATTATTCTTCGTTGCTCGATGAAAAA GATCAGTCTTTGTTGGTTGATCAAGATGAAACCTAAGACATTGAAGGTAGTTGCAAACTTGCAATTTTTTTTTGTTAAAC AAGGTATCCTCACGGTTTTGTTGTTAAATAAGGTATCCTCACGGTTAGT
CDS sequence (LotjaGi4g1v0085200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCCACCCATTTCACCTGCTTCTGCTTCTCCTCCCAACTTACCACCTCTTCCTCCTCCCCTTCGCCGCCTCCATCGG CGTCAACTACGGCACCGTCGCCGACAACCTCCCACCTCCCTCCACAGTAGCCACCTTCCTAAAATCCCAAACCACCATCG ACCGCGTCAAAATCTTCGACACAAACCCCGTCATGCTCCGCGCCTTCGCCGGAACCAACATCGCCGTCACAGTAACCGTC GGCAACGGCGACATCCCTAAACTCGCGAAGCTACCAGCAGCCCAGTCATGGGTCGCCAGCAACATCCTCCCCTTCCACCC CAAAACCACCATCAACCGCATCGCCGTCGGCAACGAAATCCTCGCCACCTCCGACAAAACCCTCATCGCACACACTCTCC CCGCCATGGAAGCTCTCTACAAAGCCCTCCAACTCGCGAACCTCACCCACATCCAAGTCTCCACCCCTCACTCCCTCGGC ATCTTAACCTCCTCAGAACCACCCAGCTCGGCGGCGTTCCGCCGCGGCTACGACAAAACCATCTTCACCCCCATTCTCAA CTTCCTCCGCCAAACAAACTCCCCATTCATGGTAAACCCATACCCATTCTTCGGGATCACGTCAACCCGACCCGATACTC TCAACTACGCGCTGTTCAAACCGTTTCACGGCGTTTTTGACGCGGCAACCGGCGTGAACTACACGAACATGTTCGACGCG CAGATGGACGCGGTGTTTTCTGCGATGAAGAAGGTTGGATATGGTGACGTGGAGTTGGTGGTGGCGGAAACGGGTTGGCC GTCGGCGGGTGACCCGAACCAAGCGGGTGTGGGTGTGGACAATGCGGCGTCGTATAATGGGAATTTGATTAAGCACGTGA GTTCTGGGAAGGGGACACCGTTGATGCCTAATAGAACGTTTGAGACTTTTATATTTTCTTTGTTTAATGAGAATTTGAAG GCCACGGTTTCGGAGCGGAATTATGGCTTGTTTAAACCTGATCTTACTCCTGTTTACGACGTCGGTCTTCTCACTCAACA GGCAGCGGGTCCCACATCTGGCCCCACAGCTGGACCCACAGCGGCACCAGCAGAAGCACCGTCGTCAGGGTCGGGTGAAC CGCCGTCGTCTTCAAAGTGGTGCACGGCGAAGCAGGGAGCAAGTGAAGCGGCGTTGCAGGCCAACATTGACTTCGCGTGC AGTACTAAAGGGGTAGACTGTGGGCCCATAAAGCAAGGTGGGCCATGCTTCAAGCCCAATACAGTGAGGGCCCACGCGTC CTTCGCCATGAACGCGTATTACCAGGCATCTGGCCGCCATGATACCGACTGTGATTTCGGACACACTGGAGTCGTCACTT CCATCAACCCAAGTTATGAGACGTGTACGTATGTATCTTCAGCTGAAGGGCCCAAACAAAAGGTTAAAAATCCGGATACA GTAGGGTCACCAACAGGGTCACCAGTAGGGTCACCCAAACCTGCAAAGTCTAACGACGCTGGATCATTGAAGGCTTTCTT AGTTCATCTTCAACTTATCTGTTTCTGTTTTTTCTATCTTTAA
Protein sequence (LotjaGi4g1v0085200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAHPFHLLLLLLPTYHLFLLPFAASIGVNYGTVADNLPPPSTVATFLKSQTTIDRVKIFDTNPVMLRAFAGTNIAVTVTV GNGDIPKLAKLPAAQSWVASNILPFHPKTTINRIAVGNEILATSDKTLIAHTLPAMEALYKALQLANLTHIQVSTPHSLG ILTSSEPPSSAAFRRGYDKTIFTPILNFLRQTNSPFMVNPYPFFGITSTRPDTLNYALFKPFHGVFDAATGVNYTNMFDA QMDAVFSAMKKVGYGDVELVVAETGWPSAGDPNQAGVGVDNAASYNGNLIKHVSSGKGTPLMPNRTFETFIFSLFNENLK ATVSERNYGLFKPDLTPVYDVGLLTQQAAGPTSGPTAGPTAAPAEAPSSGSGEPPSSSKWCTAKQGASEAALQANIDFAC STKGVDCGPIKQGGPCFKPNTVRAHASFAMNAYYQASGRHDTDCDFGHTGVVTSINPSYETCTYVSSAEGPKQKVKNPDT VGSPTGSPVGSPKPAKSNDAGSLKAFLVHLQLICFCFFYL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 7 | 20 | 14 | - | – | |
| PANTHER | 17 | 458 | 442 | 4.2E-205 | – | |
| PANTHER | 17 | 458 | 442 | 4.2E-205 | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Gene3D | 24 | 350 | 327 | 1.1E-120 | – | |
| Pfam | 26 | 341 | 316 | 4.7E-82 | ||
| Phobius | 26 | 520 | 495 | - | – | |
| SUPERFAMILY | 26 | 342 | 317 | 1.82E-80 | ||
| CDD | 31 | 141 | 111 | 0.00642209 | – | |
| ProSitePatterns | 257 | 270 | 14 | - | ||
| MobiDBLite | 347 | 383 | 37 | - | – | |
| SMART | 379 | 464 | 86 | 3.5E-45 | ||
| Pfam | 379 | 450 | 72 | 8.0E-21 | ||
| MobiDBLite | 470 | 496 | 27 | - | – | |
| MobiDBLite | 478 | 492 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi4g1v0085200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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