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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0087800 |
| Transcript ID | LotjaGi4g1v0087800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 14-3-3 protein, putative; TAIR: AT1G26480.1 general regulatory factor 12; Swiss-Prot: sp|Q9C5W6|14312_ARATH 14-3-3-like protein GF14 iota; TrEMBL-Plants: tr|I3S2S9|I3S2S9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0087800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11652545..11655334) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCGCGGAGAAGGAGAGAGAGACGCAGGTTTACATGGCCAAGCTTTCTGAGCAGGCTGAAAGATATGAAGGTTCCTT TTTCCCTTTATTATTGCAATGCACACCTTGATCCATGGTTAGATTTAGGGTTTTGAATCGCTGTCGCGGTTGTGGTTGCG TTACGAAATTACAGTCAAATGCAGGTTGAAGCGACCGCAAAATCGGTTGCGATGCAGCCAAAATTGCGGTTACCGACCGC AATTTAGAACCCTGGTTAGATTGATAATGATATGTTGCGTTACGGAATTACAGTCAAATGCAGGTTGAAGGGACCGCAAA ATTGGCTGTGATGCAGCCAAAATTGCGGTTGCGGACTGCAATTTAGAACCCTGGTTAGATTGATAATGATATTGATATGT TGCGTTTGGGTGCAATCCCAAGGTGTGGATATATTACAAACTGCAAAAAATGAATAATGTAACAAAGGAATGATACCAAC AGAAAAGTCAGCACAAAAAAACAATGTGTTAATTTTTTTTAAAATAGATTTATGATATAGAGCATATTGGAAAAAATGTC AGAAATGTGTGTTGGTACGTGGTGGCATTTAATTTCTCTTAGGTTAGCTTGTGTTTGTTTTGATGTTCCCTGAATTAACC TTCATATATATTATGCAGAAATGGTTGAGTGCATGAAGGCTGTAGCAAAACTTGATCTTGAGCTAACTGTGGAAGAGAGG AACCTCCTCTCAGTGGGATATAAAAATGTGATTGGTGCAAGGAGAGCCTCGTGGCGCATTATGTCTTCGATTGAACAGAA GGAAGAGTCAAAGGGAAATGAGAGCAATGTGAAACTGATCAAGGGTTACTGCCACAAAGTAGAGGAGGAACTGTCTAAGA TTTGCATTGACATTCTGACAATTATCGACCAGCATCTGATTCCTTCTTCCGCTTCAGGAGAAGCCACCGTTTTCTACTAT AAGATGTGAGTCATGTTGTAATTAGTACTCTTATGGCATTTTCTTTGTTAATTCAATTTATCTGCTTTATTGAATAGTTG CTTCCTTTGGATAGATATTTTCCCCATTTTGAATATAATATGAAAGATGCATGCTATGAGAGATAAAAGATAATGCAAAA ATATATTGTGGGTTTGTTCTATTTTAATTTATTGATTATTAAGAAACAAAAGGTAGCAGAACATTCTACTTATTCGTAAT AGCATGATATATATATATATATATATATATATATATATATATATATTGGTTGTTTGAAAATCTTCCGTGCAGAAATAATG AGAACAAAAGGAAAATTTAAGACTGCAGAAGGCTATAACTACTGAGCAATAGAGCATCTTATTAATAAGACAAAGGGTTG AATTGCACACAAAAAAAAATGCAACTTGATATTAGACAAGTGCTTAAGAAATCAAATTAATTCTACAATCAGAAGCTACT CACCTTCTTCCCAGAATTGATTTTTAACTTCAGAGTCAATTGATGAAGGATTTCCAAACATGTTACTCTGACTTTTATTT TCCTAAAATACAACAAAAAGAAACTGACTACAATTTTAGTAGCTTTCCCATCAGCAATATCTCTTGCTAGTTTTCACATG CTTTGATTCTCTGTTTGATTTCCTTCAGCTTCATTTTGATCCAGGAAAGGTGATTATTATCGTTATCTTGCTGAGTTCAA GACCGACCAAGAGAGGAAGGAGGCAGCTGAGCAGTCACTAAAGGCATATGAGGTTAGTGCCTGGCCTCTCTCATTTCAAC ACTGAATTGATTCACATGGGAATATATGATATCTTGTGTTCATCTTTAGTATATGGTGCTCTTGCTTGATGTACAAAACA ATTTCTGTTAACAGGCTGCTTCAGCCACTGCAAACACAGATCTTCCTTCAACACATCCAATCCGTCTTGGACTTGCACTC AACTTCTCAGTCTTCTATTATGAGATAATGAACTCACCTGAAAGGTAACTCTCTATTCTGGCACTTTGGCCAAACTCAAA TGTACAGGATTTGGAGGAGTACTTGGCTTAGCGTGACTGTTACTTTTTCAACAAAAAGTGCATCAGATGGATTAATATCC CACTTTCATACTTTCTAATGATTAACCAAACAGACTCTAAGGCTTACCATGACTTAGGAGTTTATTTTAACGTCTCCGTT TTCCACTCATAACACCAAAATTTGCTTTATGAAATTATTTTATAGTAATAATTGTATTTGAAAAATTAAATGCCGGTACG AAGGGTGGTGAGAGTAGAAAAAGGTATGTTAAAAGAAATGTCCTAAGTCATGCCAAGCCTTAGTCCATGGAACTGCTTTT TGCACATCGTTTTTAGTTTTGCTATTTTTGCCTACTCCAATCTTATTTTTATTTTTTAACTTAAGGAGATTGGGACATGC AAATAGTAAAAAAGGGTGTGTCTTGGTCAATCCAATTTTATAACCCATCATTCTTTTAAAATGTAGGATTTTCTCACTTA CACATCACACTCACATGTGCTTAAAAGAATTCTTTTTGTTTGCATTGGTCCAATCAAATTGCTTTTGTTGTTAGCTCTGG TTTTAATGTTAATACTGAAACATGCAGGGCCTGTCATTTGGCTAAACAAGCTTTCGATGAGGCGATTGCTGAGTTAGACA CCTTGAGTGAAGAGTCATACAAGGACAGCACTTTGATCATGCAGTTGTTGAGAGACAACCTTACTCTCTGGACCTCTGAT TTACCTGAGGATGGAGGTACGCTCATGATTGACACTTGATATAAGGTTCATTGTGGTTGTGCCCTGCTAA
CDS sequence (LotjaGi4g1v0087800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCGGAGAAGGAGAGAGAGACGCAGGTTTACATGGCCAAGCTTTCTGAGCAGGCTGAAAGATATGAAGAAATGGT TGAGTGCATGAAGGCTGTAGCAAAACTTGATCTTGAGCTAACTGTGGAAGAGAGGAACCTCCTCTCAGTGGGATATAAAA ATGTGATTGGTGCAAGGAGAGCCTCGTGGCGCATTATGTCTTCGATTGAACAGAAGGAAGAGTCAAAGGGAAATGAGAGC AATGTGAAACTGATCAAGGGTTACTGCCACAAAGTAGAGGAGGAACTGTCTAAGATTTGCATTGACATTCTGACAATTAT CGACCAGCATCTGATTCCTTCTTCCGCTTCAGGAGAAGCCACCGTTTTCTACTATAAGATGAAAGGTGATTATTATCGTT ATCTTGCTGAGTTCAAGACCGACCAAGAGAGGAAGGAGGCAGCTGAGCAGTCACTAAAGGCATATGAGGCTGCTTCAGCC ACTGCAAACACAGATCTTCCTTCAACACATCCAATCCGTCTTGGACTTGCACTCAACTTCTCAGTCTTCTATTATGAGAT AATGAACTCACCTGAAAGGGCCTGTCATTTGGCTAAACAAGCTTTCGATGAGGCGATTGCTGAGTTAGACACCTTGAGTG AAGAGTCATACAAGGACAGCACTTTGATCATGCAGTTGTTGAGAGACAACCTTACTCTCTGGACCTCTGATTTACCTGAG GATGGAGGTACGCTCATGATTGACACTTGA
Protein sequence (LotjaGi4g1v0087800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAEKERETQVYMAKLSEQAERYEEMVECMKAVAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNES NVKLIKGYCHKVEEELSKICIDILTIIDQHLIPSSASGEATVFYYKMKGDYYRYLAEFKTDQERKEAAEQSLKAYEAASA TANTDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPE DGGTLMIDT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 245 | 245 | 6.0E-124 | ||
| PIRSF | 1 | 245 | 245 | 3.4E-120 | ||
| PANTHER | 3 | 245 | 243 | 1.3E-160 | – | |
| PANTHER | 3 | 245 | 243 | 1.3E-160 | ||
| SUPERFAMILY | 6 | 237 | 232 | 2.22E-104 | ||
| SMART | 7 | 248 | 242 | 1.2E-170 | ||
| Pfam | 13 | 235 | 223 | 2.2E-105 | ||
| Coils | 13 | 33 | 21 | - | – | |
| PRINTS | 39 | 68 | 30 | 2.1E-81 | ||
| ProSitePatterns | 45 | 55 | 11 | - | ||
| PRINTS | 88 | 112 | 25 | 2.1E-81 | ||
| PRINTS | 119 | 141 | 23 | 2.1E-81 | ||
| Coils | 138 | 165 | 28 | - | – | |
| PRINTS | 154 | 180 | 27 | 2.1E-81 | ||
| PRINTS | 181 | 207 | 27 | 2.1E-81 | ||
| Coils | 195 | 215 | 21 | - | – | |
| PRINTS | 208 | 237 | 30 | 2.1E-81 | ||
| ProSitePatterns | 217 | 236 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0087800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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