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LotjaGi4g1v0090100.1

Overview

Field Value
Gene ID LotjaGi4g1v0090100
Transcript ID LotjaGi4g1v0090100.1
Lotus japonicus genome version Gifu v1.2
Description Zinc finger-homeodomain protein 1; TAIR: AT5G15210.1 homeobox protein 30; Swiss-Prot: sp|Q9LXG0|ZHD8_ARATH Zinc-finger homeodomain protein 8; TrEMBL-Plants: tr|A0A0L9TLQ3|A0A0L9TLQ3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0090100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:11937198..11938487) extracted from Lotus japonicus Gifu genome v1.2.

CCCATTTAAACCTCAGATTTTTGTCATCACTTCTCATTATAACTATCATCATCACCATCCCTGCATTACATCATCATTAC CCTTTTTTTCTTCCAAACCATTAACCCTCCTCACCTTGTGTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTCTTTT CCCCTTTGTTGCCTACAACTCATCAAATTATGCTTCAAACTTGTCACAACCCCTAATCCCAATTCCTCTCTCTCTCTCTC TCTCTCTCTCTCTCTCTCTCTAATATCATTCTTGGAGACATGGACTTGACCTCCAGCTTAGATCCAGACACTCAAACCAC ACCACCACCAACCTACCCCACATCTTTCACCAACGGCACACACAAGCACACCACCACTGCTCCGCCGCAGCGACCACCAT CCATGGTGGTTGTTTCCTTCAAGGAATGCCTAAAGAACCATGCCGCCAGCTTAGGTGGCCATGCACTTGACGGTTGCGGT GAGTTCATGCCCTCTTCTTCCACCAACCCCACTGACCCTCGCTCCCTCAAATGTGCCGCATGTGGCTGCCACCGCAATTT CCACCGCCGTGACCCTTCAGCCCAAACCCCACCACAACCACTCCCTCACCATGGCATGAGCCGAAGCACAAGTCCAAGCC TGAGTTCCAGCCAAAGCCCAAGCCCAATCTCAAGCCCCTCCCCACCACCACTCTCACACATGCCACCTTCAGCTTCAGCA GTACCCCAAATGCTCCTAGCCCTTGGCACCGCATTTTCAACACCCCCTGAGAACCCAACTGCGAAGAAGAGGCAGAGAAC GAAATTCACCATGGAGCAGAAGGAAAAGATGCAGAGCTTCTCTGAGAAATTGGGATGGAGAATGCAGAAAGATGATGGAT TGGTCCAGAAATTCTGCAATGACATTGGAGTCTCCAGAGGGGTGTTCAAGGTTTGGATGCACAACAACAAGAATAGCTTT AGAAGGAGATCACAAGATCAGGGAGATGCTCCTCCTCCTCCTCCTCAAACTGAAAAGAATCATGGTGGTTGCTTTGATAG TGATATTAACAATAATGACATTCACATGAATCAAGATCACTCTACTGTCAATGTTCATTTCTCATCTTAATCTTCATTTT GCTGTCACATTTTCCTCTTGATTACATTTTAAATGACTTAGCTGTAATTTTTATAGATGTTAATATTAATTATTGCATGC CTACTTATGTTAAAATCATTCATCTCTCAGAATGCCCATACTTGTTGGTCCATTATACGAGCTTTATCAACTTTGGGATG GAGCTTATCT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0090100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTTGACCTCCAGCTTAGATCCAGACACTCAAACCACACCACCACCAACCTACCCCACATCTTTCACCAACGGCAC ACACAAGCACACCACCACTGCTCCGCCGCAGCGACCACCATCCATGGTGGTTGTTTCCTTCAAGGAATGCCTAAAGAACC ATGCCGCCAGCTTAGGTGGCCATGCACTTGACGGTTGCGGTGAGTTCATGCCCTCTTCTTCCACCAACCCCACTGACCCT CGCTCCCTCAAATGTGCCGCATGTGGCTGCCACCGCAATTTCCACCGCCGTGACCCTTCAGCCCAAACCCCACCACAACC ACTCCCTCACCATGGCATGAGCCGAAGCACAAGTCCAAGCCTGAGTTCCAGCCAAAGCCCAAGCCCAATCTCAAGCCCCT CCCCACCACCACTCTCACACATGCCACCTTCAGCTTCAGCAGTACCCCAAATGCTCCTAGCCCTTGGCACCGCATTTTCA ACACCCCCTGAGAACCCAACTGCGAAGAAGAGGCAGAGAACGAAATTCACCATGGAGCAGAAGGAAAAGATGCAGAGCTT CTCTGAGAAATTGGGATGGAGAATGCAGAAAGATGATGGATTGGTCCAGAAATTCTGCAATGACATTGGAGTCTCCAGAG GGGTGTTCAAGGTTTGGATGCACAACAACAAGAATAGCTTTAGAAGGAGATCACAAGATCAGGGAGATGCTCCTCCTCCT CCTCCTCAAACTGAAAAGAATCATGGTGGTTGCTTTGATAGTGATATTAACAATAATGACATTCACATGAATCAAGATCA CTCTACTGTCAATGTTCATTTCTCATCTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0090100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDLTSSLDPDTQTTPPPTYPTSFTNGTHKHTTTAPPQRPPSMVVVSFKECLKNHAASLGGHALDGCGEFMPSSSTNPTDP RSLKCAACGCHRNFHRRDPSAQTPPQPLPHHGMSRSTSPSLSSSQSPSPISSPSPPPLSHMPPSASAVPQMLLALGTAFS TPPENPTAKKRQRTKFTMEQKEKMQSFSEKLGWRMQKDDGLVQKFCNDIGVSRGVFKVWMHNNKNSFRRRSQDQGDAPPP PPQTEKNHGGCFDSDINNNDIHMNQDHSTVNVHFSS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 40 40 - –
PANTHER
PTHR31948
1 228 228 1.2E-77 –
PANTHER
PTHR31948:SF66
1 228 228 1.2E-77 –
MobiDBLite
mobidb-lite
1 39 39 - –
Pfam
PF04770
45 98 54 4.0E-28
IPR006456
TIGRFAM
TIGR01566
47 98 52 6.2E-31
IPR006456
ProSiteProfiles
PS51523
47 98 52 27.155
IPR006456
MobiDBLite
mobidb-lite
97 145 49 - –
MobiDBLite
mobidb-lite
107 128 22 - –
MobiDBLite
mobidb-lite
129 143 15 - –
Gene3D
G3DSA:1.10.10.60
156 228 73 1.2E-28 –
MobiDBLite
mobidb-lite
158 177 20 - –
SUPERFAMILY
SSF46689
158 229 72 7.37E-16
IPR009057
TIGRFAM
TIGR01565
169 225 57 5.6E-25
IPR006455
MobiDBLite
mobidb-lite
226 259 34 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0090100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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