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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0092600 |
| Transcript ID | LotjaGi4g1v0092600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AGAMOUS-like MADS-box protein; TAIR: AT5G48670.1 AGAMOUS-like 80; Swiss-Prot: sp|Q9FJK3|AGL80_ARATH Agamous-like MADS-box protein AGL80; TrEMBL-Plants: tr|A0A1J7FS39|A0A1J7FS39_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0092600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:12431787..12435446) extracted from Lotus japonicus Gifu genome v1.2.
AAATCATTTTGATTTTCAATTTTATTTCTTGTCACTTTTTTTTTTCTGGCCAGCACCATGGCCAGGAGAAAAGTGAAACG TGAATACATTGTCAATGACTCTGCGAGGAAGACAACATACAGGAAAAGGAAGAAAGGTTTGATCAAGAAGGTGGATGAAC TAAGCACCCTTTGTGGAATTGAAGCATGTGCTATAATTTATAGCCCCTTCGAACCTCAACCTGTGGTTTGGCCATCCCCA CCTGGGGTTCAAAAAGCGTTGGAAAGGTTGAAGACAATGCCTGAATTGGAGCAGAGCAAGAAGATGGTGAACCAGGAGAC TTTCACAAAACAGATGATCCTGAAGGCAAAAGACCAAATGATGAAACAGAGGAAGGAAAACAGGGAGAAAGAGATGAACT TGCACATGTATAGGTGCATCAATGCAGGGAAGGTTAAACCCAACATGAACATGAATGATCTGAATGATCTTGCCTGGGTG ATTGATCAAAATTTGAAGGAGGTCGACCGAGCGTTGGAAAAAATGAATAAGATTGTGGTCCACCAGGGTCAATCTTCAGT CTTAGTCGGTGAAAGTTCAATCCAACCCCAAATGGCACTAGCACCAGCACTTGCAGTAGCCAAAACTGAAGAAATGGCCA TAGTGAATGATGCCCATGGGCTGGTCACGGATAATTCTGATGCCATGCAGAGGCAATGGTATATTAATTTGATCAATGAT AATTATGGGAATGAGACAGTCCCATTATTTGGAGACGCTAATCTCCAAAATAGATTATTTTGGCCCCACTCATAATCTCG AGAAAATTATGATGTTCCTCTTAGCAATGCTTGTAGGGGGAATGCATGATCTCTCCCAATCTAGTTTTATGATTTTTGTT TTTTGTGTAAATGTGAAGACACAATATTTAGCCATTATGGCTTAGTAGTCTTCACATTTTTATTTCATTTATGCAAATAA TACATCATGTGTAGCTTAGGCTCACATGTTTATTTCCGCTACTTCCAAAATCTTGTGGCTTTAAATTCAAAGTGTACTGG TTCTGGTAGTATGAATAAAGTTTTAATTCGTGTTGTTTTTCAATGTTTTTTGCATCTATGATTAATCAACAATGGCTACT TCTTGTATTGCAAATAAATGAAAAATAATTATTTTATTTAAATTTAGATTCATAAGCTATCAAGAGACTCATTTCGTAGG ATAATAACTGTAGCATTCATTTTGGTTATGATGTACATATATATGCTACAATTTGTACACTGTATTTTTTGATACATATC TTTATTATTAATAAAATACAAATTATAACTAAACTACAATTCTAAAACATCCGTCCAAAACCAAAACCATTCCCACTTTT TTCTTTTTTTTTGGGAGAATATTTCTTCTTGTGACCGTTGTCGATTACTACAAATACTAATAAGGACCTCTCAAATTCTG AATTTATGTTTATTTATTTTGTAAACTTTACTAATTCATCATATATATAAATAATAACCAGAATAATATGAGGAACATTT CAGGTCTTGATTTTTGTATGTATCTCTCGGGTTGTTTTTGTATTGTTTATGGGGTTTCTTATTTGTTGTCCCCCTTGCCA TCGTTGCTGTTTGTTTAGCCTTGCGATTGATCTGGTTCCTGGGTCTTGGTCGGGGGCTTTTAGGTTTAGTGGGGTTTCCT TTTGTTCATCGAGTTGTTCCTTTTTTGAGGCTTTACTCGCTCCCTTAAGGTTTTGTCCTTAGGGGTTTTTTGTGGATAAT AATACATAATCTTTTATCTATCAAAAAAATAATAAACAAAATGAAATGAATGGAATAAGATTATGAATTAAGAGTAAATT AGAAAAAATATCGCATAGGTACCCGTAAGATATTTGCACCTGAGAACTTTTTTATCAATATAATAATATTTAAATAATGT ATTTATACAACAAAAAAGTTGGTCGTGAGAATCGGGAGTTTTAGTAATCTACTATAAATATATTATACTAATCCATTATG AATAAAAAAATATGATAGTCATTACAAACAATTAAATTTGAAATATAATTTTGCATGAATCCATTATAGATAAGATCCTT ATCCATTATAACCCTCAAACAAACTCAACGCAATAGCTATCTTCTCAAAACCAACCTCTAATACAATTATTGGTTCTTAA TTATTATAATAAATTGCTAAGTTCTTTATACACTCTGACCCTCTAGCAAACTCAATTATTGGTTTCCTTAGCCTCTAACA CAATTATTGATTTTTAATTATTATAATTAATGGCTAAGATTAATCTAAATAAAAATAGGTTATTAAATTTATAAAAAATA TTTATGACAATTTATTAGTGGAGTGGATGAAGAGAATTTGAATTCTCATACTACCAAGATATATCATATTTTTTACAGCT TGAATATCATAATGACACATGATTATCTATATCTTCTGTGAATGGAATGACATTTATGGTGAGATTTTACACCACAAAGT GAGTTGGCAGCTATTAGTGAAGATCTTCACAAATCAAACAAGGCATTTAAACTGGACCTATATATATATATGAGACAATT CATGATGAAAAACCACAACAAATCATTTTGATTTTCAATTTTATTTCTTGTCACTTTTTTGTTCTGGCCAGCACCATGGC CAGGAGAAAAGTGAAACGTGAATACATTGTCAATGACTCTGCGAGGAAGACAACGTACAGGAAAAGGAAGAAAGGTTTGA TCAAGAAGGTGGATGAACTAAGCACCCTTTGTGGAATTGAAGCATGTGCTATAATTTATAGCCCCTTCGAACCTCAACCT GTGGTTTGGCCATCCTCACCTGGGGTTCACAAAGCGTTGGAAAGGTTGAAGACAATGCCTGAATTGGAGCAGAGCAAGAA GATGGTGAACCAGGAGACTTTCACAAAACAGATGATCCTGAAGGCAAAAGACCAAATGATGAAACAGAGGAAGGAAAACA GGGAGAAAGAGATGAACTTGCACATGTATAGGTGCATCAATGCAGGGAAGGTTCAACCCTCCATGAACATGAATGATCTG AATGATCTTGCATGGGTGATTGATCAAAATTTGAAGGAGGTCGACCGAGCGTTGGAAAAAATGAATAAGACTGTGGTCCA CCAGGGTCAATCTTCAGTCCTAGTCGGTGAAAGTTCAACCCAACCCCAAATGGCACTAGCACCAGCACTTGCAGTAGCCA AAACTGAAGAAATGGCCATAGTGAATGATGTCCATGGGCTGGTCACGGATAATTCTGATGCCATGCAGAGGCAATGGTAT ATGAATTTGATCAATGGTAATTATGGGAATGAGACAGTCCAATTATTTGGAGATGCTAATCTCCAAAATGGATTATTTTG GCCCCACCCATAATCTCGAGAAAATTATGATGTGCCTCTTAGCAATGCTTGTAGGGGGAATGCATGATCTCTCCCAATCT AGTTTTATGATTTTTGTTTTTTGTGTAAATGTGAAGACACAATATTTAGCCATTATGGCTTAGTAGTCTTCACAGTTTTA TTTCATTATGCAAATAATACATCATGTGTAGCTTAGGCTCACATGTTTATTTCCGCTACTTCCAAAATCTTGTGGCTTTA AATTCAAAGTGTACTGGTTTTGGTAGTATGAATAAAGTTTTAATTCGTGTTGTTTTTCAA
CDS sequence (LotjaGi4g1v0092600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAGGAGAAAAGTGAAACGTGAATACATTGTCAATGACTCTGCGAGGAAGACAACATACAGGAAAAGGAAGAAAGG TTTGATCAAGAAGGTGGATGAACTAAGCACCCTTTGTGGAATTGAAGCATGTGCTATAATTTATAGCCCCTTCGAACCTC AACCTGTGGTTTGGCCATCCCCACCTGGGGTTCAAAAAGCGTTGGAAAGGTTGAAGACAATGCCTGAATTGGAGCAGAGC AAGAAGATGGTGAACCAGGAGACTTTCACAAAACAGATGATCCTGAAGGCAAAAGACCAAATGATGAAACAGAGGAAGGA AAACAGGGAGAAAGAGATGAACTTGCACATGTATAGGTGCATCAATGCAGGGAAGGTTCAACCCTCCATGAACATGAATG ATCTGAATGATCTTGCATGGGTGATTGATCAAAATTTGAAGGAGGTCGACCGAGCGTTGGAAAAAATGAATAAGACTGTG GTCCACCAGGGTCAATCTTCAGTCCTAGTCGGTGAAAGTTCAACCCAACCCCAAATGGCACTAGCACCAGCACTTGCAGT AGCCAAAACTGAAGAAATGGCCATAGTGAATGATGTCCATGGGCTGGTCACGGATAATTCTGATGCCATGCAGAGGCAAT GGTATATGAATTTGATCAATGGTAATTATGGGAATGAGACAGTCCAATTATTTGGAGATGCTAATCTCCAAAATGGATTA TTTTGGCCCCACCCATAA
Protein sequence (LotjaGi4g1v0092600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARRKVKREYIVNDSARKTTYRKRKKGLIKKVDELSTLCGIEACAIIYSPFEPQPVVWPSPPGVQKALERLKTMPELEQS KKMVNQETFTKQMILKAKDQMMKQRKENREKEMNLHMYRCINAGKVQPSMNMNDLNDLAWVIDQNLKEVDRALEKMNKTV VHQGQSSVLVGESSTQPQMALAPALAVAKTEEMAIVNDVHGLVTDNSDAMQRQWYMNLINGNYGNETVQLFGDANLQNGL FWPHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 49 | 49 | 16.596 | ||
| SMART | 1 | 60 | 60 | 6.1E-22 | ||
| CDD | 2 | 85 | 84 | 6.79189E-31 | ||
| SUPERFAMILY | 3 | 94 | 92 | 1.57E-23 | ||
| PRINTS | 3 | 23 | 21 | 1.5E-6 | ||
| PANTHER | 4 | 232 | 229 | 2.6E-60 | – | |
| PANTHER | 4 | 232 | 229 | 2.6E-60 | – | |
| Pfam | 11 | 50 | 40 | 1.5E-16 | ||
| Gene3D | 13 | 120 | 108 | 7.2E-14 | ||
| PRINTS | 23 | 38 | 16 | 1.5E-6 | ||
| Coils | 94 | 114 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity, RNA polymerase II-specific | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units. | ||
| Molecular function | Proximal promoter sequence-specific DNA binding | Interacting selectively and non-covalently with a specific upstream regulatory DNA sequence (transcription factor recognition sequence or binding site) located in the proximal promoter. The proximal promoter is in cis with and relatively close to the core promoter. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Positive regulation of transcription by RNA polymerase II | Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter. | ||
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0092600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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