Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0093600 |
| Transcript ID | LotjaGi4g1v0093600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine carboxypeptidase, putative; TAIR: AT5G36180.1 serine carboxypeptidase-like 1; Swiss-Prot: sp|Q8RWJ6|SCP1_ARATH Serine carboxypeptidase-like 1; TrEMBL-Plants: tr|A0A1J7GMS0|A0A1J7GMS0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0093600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:12591214..12595623) extracted from Lotus japonicus Gifu genome v1.2.
TTTTTTGCTTATATAGTAGTGGCAATACGGACAACTATCACCGCTGCTTTATGCAACATCTGGACAACCTGCAGAATGTT GGTGCCATTTTTATGCATGCGTGCTAAATGCTCCAACATCTGCACACTTCTCAGTCCATGCAGAATTAATGTAGAGAACT CTTCATATATCACTTCTTTATGTTATCTCCACATTCAGTAGCAGCAAACAAGAATAATTTAGCTTCACAAAGGAAATGTC ATTCTATTCTAAAAGTTTCATGAGGTTATGTCTTTTAATCTGCATCGTTCTTATCTTGTCAAAGCCTGCAGTTTCTTCTA ATATCATCAAGTCTTTGCCTGGGTTTCCTGGTACCCTTCCTTTTAAATTTGAAACTGGGTGAGTTTGCATGTTTGTATCA ACTTTTATTTCCTGAGAATCAATTCTAGCATCTAGAAGCCACCCTGTTTAGTTTCATCTTATAATTAATTTTGACTTTAG GATCAATTATATGTGCAAATTGCAATGTTTGTGTAGATACATTGGTGTTGGTAAGCATGAAGTGGCGCAATTGTTTTATT ACTTTGTTGAATCAGAGAGAAATCCAACAGAGGATCCTCTGTTACTCTGGATGACTGGTGGCAACGGTTGCTCTGGCTTG TGCGGACTTTGGTTTGAAATAGGTGTTTCCTTTTCTTCATCCTGCATAAATCTGAAAATTTATTTTTATAACCAATTCAC AGTTGACAATCCATAGTTTTTAGTGTTTTTGATAGTTTTTTCTTGCTATCTTGCTGCCACATTATGCTTAGGCCCACTGA AGTTTAATATGGTGAAGTATAATGGAACCATGCCATCATTTTCTCTCAATCCACACTCATGGACAAAGGTATATATATGT TTATGAAAGAATATGTCAAACATGGTAATTAATTATCATCCAATTGGTAAAGAAATCCTAATTGATTTTTGTTGTCGACA ATTATGCTTCCCAAGGTTTCTAGTATAATCTTTATTGATGCGCCGGTTGGCGCCGGATTCTCATATTCAAAAACCTTACA AGGGTCCAAGACAACAGACAAAATACATGCCCAACACTGTCACAGTTTCATGAGAAAGGTGAAATTGAATTTACAATTGT TAGCTGAGTGAATACTTTACTGCACTCTGTTGTATAATAGCATGTTTGGATCATTTTTCTCAAAATCAATATATGCAGTG GTTGGCGCGTCATCCGAAATTTATTGATAATCCAGTCTACATTGCTGGTGACTCATATTCTGGCTTAACACTTCCAATTG TTGTCAAATATGTTATAGATGGTAATACCACCATGCCTTAAACTATTATCTATGACAGATATCATATTTATGCCAACTAT TCCATTATATATGATTGATTATGTTGTTGTAGAAAACGAAGCTGGAGAAAAACCAAAGATAAATATAAAGGTAAGTAGAT TGATCAAGCAATTCAGCTAGAGTTTAATAATTGTAAATGTTTCACAGCGATTAACTAATTGTTATAGGGATATGTACTTG GGAACCCAGTCACAGATCTAACATCAGATTGGAATTCAAGGATTCCATTTGCTCATCACATGGCTCTTATTTCTGATGAA CTCTACAAGGTTAGACACAAAAATTTACTATGATGGACCTCTGTTGATGTCGAATTAAGCTTTATGCATACGCCCATATA ACTGAATAATAAAAGTATGGATCGGTTTCTTTTATCTGATAATCAATTCTGACACTCAAAGACTATTCACATTCAGGTTG GGCTAACTCTACATCAAAAGTTAGTTAGGGGGTGATGATTGCTCTACCTTATATATGGACTTATTTGGTCATATCTCTAG TTAATGTGAGATTTCTCAACACATACCCGACCTCTTATACCTGGATTTGGACATCTGGAGTGTGAAGTTTTTAGGACTAG ACATCTACGAGTTGCCCAATAAATGGATCCGAGATAGACTCTGATATCTGATACCATAAATCGAAATTCGGAGAGAATCG TTAAGAGAAGATGTTATAAAAAACTTTAGAAAATTGAAACTGAATGAATGGACTTTCATTACCTATTCAATTGGCTTCTA TGAGCTTATATATATGTACTAAATGTAACTAACCATATGGAAGTAGTTGCTGATTTAACAATTTCCATAACTGATTAATT AGAACAACTAACTCACTACTAACTCTAACTAACAATTAACTCTACATAGTTAACGGTAGTTAAAAGCAACTAACTCAGCT AGTTCTAACTGTCTTTGCAATCTTCTTTGTATAATTGACTTTGGTTTAGAATCAATTGTAGAATGATTTTCAAACATGCA ATGCAATTAGTATTCTAAATTTCTAATAACTTCATTGTATTTCTCCCAGTCGGCAAAACTTTCATGCAGAGGGAAGTATG TGAAGGTGAAGAAAAGCAATGTACCATGTCAGAAGGTTCTCCAATCTATCTCAGAGGTCAATAGTCGTATTTTGCTCATC AAATGAAGCCTTGGTGCTCTTTTTCATTTCCTAAAATAGAGTTTTACTGCTATGCTTTTCACAGAGAATCAGTAAAATAA ATTTGCAACATATCTTAGAGCCTCTTTGTCCAGGTGACTTCAAATTTCAAGAACAAGTAGATGATCGGAGGGTTCTTCAA GAAAAATCCAGGGAGTTGTTGCTTTCTCCACTGCCAATCTTCAAATTTGGATGTAGGGTATGCAATTCCTAATTTTTCAG TTTCGTAATCTTATTATTTGAAAGAGAAGTGCTCGCAACACACTCTTACAAGCTAGCACATTCTCTTATCGGTTGAAATT CACAGTGATACAATGATACTGTCTAAATTACATACTATTTTGAAAGGATTTACATAAATTTCAACTTCTATAAAAAGTGT GTATTGCAAAGAATGTGTGAAAGAATATATTGCCATCACTACACGTTTTGTACTTAGCACTAACCGAAATTACAGGGTTA TGAGAATCTCTTGTTGCATGTATGGGCCAATGATGTTCATGTTCAAAAGGCCCTTCAAGTCCGCAAGGTGTGTATGGAAA CATTTGTTTCAATTTACATAGTGCATGTTTTGATACACGATTTAATACCACACTGAGTCAAAATCACGATAGATAGAAGC AGCTACCATATATCCAAACATGCACTCTTATTTGGTTGTTTTAATACATTCACCTTATACTGAACTAAAATTCAGGACAC TGTGAAAGCTTGGAAAAGATGTAACGACAGCATAATTTACACAAATGATGTCCAAAGTTCTGTTGCCTATCACCAGTATC TCAGAATCAAACATTTCCGGGCTCTTATATACAGGTTCTACTACGACTTAAGCTTTATCATTTGAATGTATTAAATGCAG GTCATGAAGAAACTTGTCTCTCGTGACATTTTACCATATAATATAATTATTAGGTGGAATAATAAGTGATGAGTAAGATT TTGTTAAATAGTGCAATACCAATCTCAAGTCACTATATGCAGCGGTGACCATGACATGGTGGTTCCATACTTGGGAACTC TTGGGTGGATCAATTCTCTGAACTCTACCATTGTGGAAGATTGGAGACCTTGGGAAGTCAACGATCAAGTTGCAGGGTAA GACTACTATTGTAGAAAATATATACAATTAACATCTTGAGATATAGGTTTCAATTGATTTGAATTTGATGCATCTCTTTT TTGGGTGCAGGTATATACAAGAGTACTCCAACTATATCAGTTTTGCTACCGTGAAGGGCGCTGGTCACGTAGCGCCAGAG TACAAGAGAAAAGAATGTTTTGAAATGTTCAAGAGGTGGATCTCTCATGAGCCTTTGTGATTCATGGATCCTTATATTGT ACTCCAAATGCAGACACATATCCTTTCTAAATAGACATCAAATTTGTATTTTGTTTGGAGAGGGATGCACTTATTGTTGC TAGAGGAACTTTTGTGTGATACACCAATAATGCATGGCTTTCTTGTTTATATAGGCCAATGATAATGTTGGCTAATGTCA TGATCGGTTACCACCCTCTAAGGGTGTGTTTTGCTGCTGCAGCTGAGAACGGATGTTCTGTTATTGGCATGAGGGGGTAT ACTTGAGAGGGCAGGGTCATAAATATATTTTTATAAAAGAGGGAGTTGATTTTAGCCCGTATATAATCATGTTCATTTGA TTATAATTCAATTGTTTTATCTTGATCTTCATGCTATATTTTAGTTGCGCGCCTGGAACATTTTGATTGATTCGACGTGA GAGTGGAAACTACAACGTCTTGAGCTCGAACTAGAGTTAATCATCTAATAAATCTAATTTCTAGGCATAGAGTTGGGATT TTTAGTACCCAAGCTTCAAGATAGCACTCTTTTCCACGTTTGTAAAGTTATTTATGGATAGTTAACTCTGTTTATTGCAG TTGTATTAAT
CDS sequence (LotjaGi4g1v0093600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCATTCTATTCTAAAAGTTTCATGAGGTTATGTCTTTTAATCTGCATCGTTCTTATCTTGTCAAAGCCTGCAGTTTC TTCTAATATCATCAAGTCTTTGCCTGGGTTTCCTGGTACCCTTCCTTTTAAATTTGAAACTGGATACATTGGTGTTGGTA AGCATGAAGTGGCGCAATTGTTTTATTACTTTGTTGAATCAGAGAGAAATCCAACAGAGGATCCTCTGTTACTCTGGATG ACTGGTGGCAACGGTTGCTCTGGCTTGTGCGGACTTTGGTTTGAAATAGGCCCACTGAAGTTTAATATGGTGAAGTATAA TGGAACCATGCCATCATTTTCTCTCAATCCACACTCATGGACAAAGGTTTCTAGTATAATCTTTATTGATGCGCCGGTTG GCGCCGGATTCTCATATTCAAAAACCTTACAAGGGTCCAAGACAACAGACAAAATACATGCCCAACACTGTCACAGTTTC ATGAGAAAGTGGTTGGCGCGTCATCCGAAATTTATTGATAATCCAGTCTACATTGCTGGTGACTCATATTCTGGCTTAAC ACTTCCAATTGTTGTCAAATATGTTATAGATGAAAACGAAGCTGGAGAAAAACCAAAGATAAATATAAAGGGATATGTAC TTGGGAACCCAGTCACAGATCTAACATCAGATTGGAATTCAAGGATTCCATTTGCTCATCACATGGCTCTTATTTCTGAT GAACTCTACAAGTCGGCAAAACTTTCATGCAGAGGGAAGTATGTGAAGGTGAAGAAAAGCAATGTACCATGTCAGAAGGT TCTCCAATCTATCTCAGAGAGAATCAGTAAAATAAATTTGCAACATATCTTAGAGCCTCTTTGTCCAGGTGACTTCAAAT TTCAAGAACAAGTAGATGATCGGAGGGTTCTTCAAGAAAAATCCAGGGAGTTGTTGCTTTCTCCACTGCCAATCTTCAAA TTTGGATGTAGGGGTTATGAGAATCTCTTGTTGCATGTATGGGCCAATGATGTTCATGTTCAAAAGGCCCTTCAAGTCCG CAAGGACACTGTGAAAGCTTGGAAAAGATGTAACGACAGCATAATTTACACAAATGATGTCCAAAGTTCTGTTGCCTATC ACCAGTATCTCAGAATCAAACATTTCCGGGCTCTTATATACAGCGGTGACCATGACATGGTGGTTCCATACTTGGGAACT CTTGGGTGGATCAATTCTCTGAACTCTACCATTGTGGAAGATTGGAGACCTTGGGAAGTCAACGATCAAGTTGCAGGGTA TATACAAGAGTACTCCAACTATATCAGTTTTGCTACCGTGAAGGGCGCTGGTCACGTAGCGCCAGAGTACAAGAGAAAAG AATGTTTTGAAATGTTCAAGAGGTGGATCTCTCATGAGCCTTTGTGA
Protein sequence (LotjaGi4g1v0093600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSFYSKSFMRLCLLICIVLILSKPAVSSNIIKSLPGFPGTLPFKFETGYIGVGKHEVAQLFYYFVESERNPTEDPLLLWM TGGNGCSGLCGLWFEIGPLKFNMVKYNGTMPSFSLNPHSWTKVSSIIFIDAPVGAGFSYSKTLQGSKTTDKIHAQHCHSF MRKWLARHPKFIDNPVYIAGDSYSGLTLPIVVKYVIDENEAGEKPKINIKGYVLGNPVTDLTSDWNSRIPFAHHMALISD ELYKSAKLSCRGKYVKVKKSNVPCQKVLQSISERISKINLQHILEPLCPGDFKFQEQVDDRRVLQEKSRELLLSPLPIFK FGCRGYENLLLHVWANDVHVQKALQVRKDTVKAWKRCNDSIIYTNDVQSSVAYHQYLRIKHFRALIYSGDHDMVVPYLGT LGWINSLNSTIVEDWRPWEVNDQVAGYIQEYSNYISFATVKGAGHVAPEYKRKECFEMFKRWISHEPL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 10 | 10 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 11 | 22 | 12 | - | – | |
| PANTHER | 12 | 457 | 446 | 2.1E-184 | ||
| PANTHER | 12 | 457 | 446 | 2.1E-184 | – | |
| Phobius | 23 | 27 | 5 | - | – | |
| Gene3D | 25 | 298 | 274 | 7.2E-81 | ||
| Phobius | 28 | 468 | 441 | - | – | |
| SUPERFAMILY | 31 | 467 | 437 | 1.74E-111 | ||
| Pfam | 35 | 464 | 430 | 3.2E-118 | ||
| PRINTS | 116 | 128 | 13 | 1.2E-21 | ||
| PRINTS | 129 | 139 | 11 | 1.2E-21 | ||
| PRINTS | 164 | 189 | 26 | 1.2E-21 | ||
| Gene3D | 323 | 468 | 146 | 3.4E-42 | – | |
| PRINTS | 435 | 448 | 14 | 1.2E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type carboxypeptidase activity | Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi4g1v0093600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…