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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0094600 |
| Transcript ID | LotjaGi4g1v0094600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | GRAS family transcription factor; TAIR: AT4G37650.1 GRAS family transcription factor; Swiss-Prot: sp|Q9SZF7|SHR_ARATH Protein SHORT-ROOT; TrEMBL-Plants: tr|K7KPG8|K7KPG8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0094600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:12687050..12688955) extracted from Lotus japonicus Gifu genome v1.2.
CTCTCATTGTAATTAAGGTAAATAGAATCTATCCAAATATTTTGAAAAACTTCATCTGTAATCATTTCTCAAACAGTACC CCAAATTCCCACAGTTAAAAACACGTTACAACCATTCCCATTACTTGTGCGGAGAAGCAACTAACAAACAGCTGGTGGGG TTAAATGGATACCTTGTTTAGGCTAGTCAATTTTCAATACCAACACCAACCTGATCCATCTCTCAACTCCACCACCAGCA TAACATCCAGCAGCTCCAGATCCTCCAGACAAAACTACCCCTATTACCAGCAACATCAAGACCAAGAAGAAGAAGAAGAA TGCTTCAACTTTTACATGGATGAAGAAGACCTATCCTCCTCTTCTTCCAAACACTTCTACCCTAACTACCATCATGTATC CACTACTCCTAATTACACAACCACCCTCACCCCCACCCCCGCCACCACCACCGACTACTCCTACCAACCAGCCACCACTG ACTACAACCTCGACTTCTCCAGCACGTGGGCGCCCAACCTCCTCCTTGAAACGGCACGCGCCATCGCCGACAAGAACAGC AGCAACCGCGTCCAACACCTCATGTGGATGCTGAACGAGCTGAGCTCCCCTTATGGCGACACCGATCAGAAGCTCGCTGC ATACTTCCTCCAAGCCTTGTTCAGCCGCATCACCGAAGCAGGAAGCCGAACCTACCGGACCTTAGCCTCAACCTCAGAGA AGACATGCTCCTTCGAGTCCACGAGAAAGATGTTGCTCAAGTTCCAAGAGGTCAGCCCTTGGACGACGTTCGGCCACGTG GCGTCCAACGGTGCCATCTTGGAAGCCTTGGAAGGCAACTCCAAGCTCCACATAGTGGACATCAGCAACACGTACTGCAC CCAGTGGCCAACGCTTTTAGAAGCATTGGCCACTCGCAGCGATGACACCCCGCACCTGAGGTTAACCACCGTTGTCAACG GCGGTGGTGGCTCAGTTCATCGGGTGATGAAGGAAATAGGGACAAGAATGGAGAGGTTCGCTAGGCTCATGGGTGTTCCC TTCAAGTTCCACATCATTCACCATGATGGTGATCTTTCAAACCTCAACTTCTCTCAACTTGACATCAAAGAAGACGAGGC TTTGGCTATTAACTGCGTTAACTCCTTGCATTCCATAACTCCCACCGGAAGCCACCGCGACGGGGTGATATCTTTGCTCC GAGGGCTGCAGCCGAGGGTGTTGACGGTGGTGGAGGAGGAAGCTGATTTCAACGCGGGTTTGGATTTCGTGGAGGGGTTT GCGGAGTGTGTGCGGTGGTTTAGGGTTTACTTTGAAGCCCTAGATGAGAGCTTTGCGAGGACAAGCGGTGAGAGGCTGAT GCTGGAGCGTGCGGCGGGGAGGGCGATCATGGAGCTGGTGGCTTGCGATGCGGCCGGGTCGGTGGAGCGGAGGGAGACGG CGGCACGGTGGGCGGGGAGGATGCGTGGGGCGGGGTTTGGCGAGGCGGCGTTTAGCGAGGAGGTTTGCGACGATGTGAGG GCGTTGTTGAGGAGGTACAAGGAAGGGTGGTCGATGGGGCAGTGCTCCGGCGACGGCGGGATGTTCTTGTCGTGGAAGGA GCAGCCGGTGGTGTGGGCCAGTGCATGGAGGCCATGACGTAGAGCATAAGAGCCTCTACTTTGGCTTTGACGTGATGAGT GACTCGCACGTGTTCTTGGTTTTTTTGGCACGTGCGTATGGATTGGATGTTTATCTTTTTTTTGTTTTTTGTTCCTCTAA TTGAAATATATAAGTTTGGATAAACAAGGGATTAAAGGGCATTTGCTTGTATTGAAAAGGAATGAAGTAATTAATTATTT TTTGTTGACATTTTATGATTTTTTAATGAGTTGTTTAAATGACTCATAATAAAGTTTGGGTTAAAT
CDS sequence (LotjaGi4g1v0094600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATACCTTGTTTAGGCTAGTCAATTTTCAATACCAACACCAACCTGATCCATCTCTCAACTCCACCACCAGCATAAC ATCCAGCAGCTCCAGATCCTCCAGACAAAACTACCCCTATTACCAGCAACATCAAGACCAAGAAGAAGAAGAAGAATGCT TCAACTTTTACATGGATGAAGAAGACCTATCCTCCTCTTCTTCCAAACACTTCTACCCTAACTACCATCATGTATCCACT ACTCCTAATTACACAACCACCCTCACCCCCACCCCCGCCACCACCACCGACTACTCCTACCAACCAGCCACCACTGACTA CAACCTCGACTTCTCCAGCACGTGGGCGCCCAACCTCCTCCTTGAAACGGCACGCGCCATCGCCGACAAGAACAGCAGCA ACCGCGTCCAACACCTCATGTGGATGCTGAACGAGCTGAGCTCCCCTTATGGCGACACCGATCAGAAGCTCGCTGCATAC TTCCTCCAAGCCTTGTTCAGCCGCATCACCGAAGCAGGAAGCCGAACCTACCGGACCTTAGCCTCAACCTCAGAGAAGAC ATGCTCCTTCGAGTCCACGAGAAAGATGTTGCTCAAGTTCCAAGAGGTCAGCCCTTGGACGACGTTCGGCCACGTGGCGT CCAACGGTGCCATCTTGGAAGCCTTGGAAGGCAACTCCAAGCTCCACATAGTGGACATCAGCAACACGTACTGCACCCAG TGGCCAACGCTTTTAGAAGCATTGGCCACTCGCAGCGATGACACCCCGCACCTGAGGTTAACCACCGTTGTCAACGGCGG TGGTGGCTCAGTTCATCGGGTGATGAAGGAAATAGGGACAAGAATGGAGAGGTTCGCTAGGCTCATGGGTGTTCCCTTCA AGTTCCACATCATTCACCATGATGGTGATCTTTCAAACCTCAACTTCTCTCAACTTGACATCAAAGAAGACGAGGCTTTG GCTATTAACTGCGTTAACTCCTTGCATTCCATAACTCCCACCGGAAGCCACCGCGACGGGGTGATATCTTTGCTCCGAGG GCTGCAGCCGAGGGTGTTGACGGTGGTGGAGGAGGAAGCTGATTTCAACGCGGGTTTGGATTTCGTGGAGGGGTTTGCGG AGTGTGTGCGGTGGTTTAGGGTTTACTTTGAAGCCCTAGATGAGAGCTTTGCGAGGACAAGCGGTGAGAGGCTGATGCTG GAGCGTGCGGCGGGGAGGGCGATCATGGAGCTGGTGGCTTGCGATGCGGCCGGGTCGGTGGAGCGGAGGGAGACGGCGGC ACGGTGGGCGGGGAGGATGCGTGGGGCGGGGTTTGGCGAGGCGGCGTTTAGCGAGGAGGTTTGCGACGATGTGAGGGCGT TGTTGAGGAGGTACAAGGAAGGGTGGTCGATGGGGCAGTGCTCCGGCGACGGCGGGATGTTCTTGTCGTGGAAGGAGCAG CCGGTGGTGTGGGCCAGTGCATGGAGGCCATGA
Protein sequence (LotjaGi4g1v0094600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDTLFRLVNFQYQHQPDPSLNSTTSITSSSSRSSRQNYPYYQQHQDQEEEEECFNFYMDEEDLSSSSSKHFYPNYHHVST TPNYTTTLTPTPATTTDYSYQPATTDYNLDFSSTWAPNLLLETARAIADKNSSNRVQHLMWMLNELSSPYGDTDQKLAAY FLQALFSRITEAGSRTYRTLASTSEKTCSFESTRKMLLKFQEVSPWTTFGHVASNGAILEALEGNSKLHIVDISNTYCTQ WPTLLEALATRSDDTPHLRLTTVVNGGGGSVHRVMKEIGTRMERFARLMGVPFKFHIIHHDGDLSNLNFSQLDIKEDEAL AINCVNSLHSITPTGSHRDGVISLLRGLQPRVLTVVEEEADFNAGLDFVEGFAECVRWFRVYFEALDESFARTSGERLML ERAAGRAIMELVACDAAGSVERRETAARWAGRMRGAGFGEAAFSEEVCDDVRALLRRYKEGWSMGQCSGDGGMFLSWKEQ PVVWASAWRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 16 | 46 | 31 | - | – | |
| MobiDBLite | 16 | 43 | 28 | - | – | |
| PANTHER | 24 | 489 | 466 | 4.4E-206 | – | |
| PANTHER | 24 | 489 | 466 | 4.4E-206 | ||
| ProSiteProfiles | 107 | 489 | 383 | 75.668 | ||
| Pfam | 118 | 489 | 372 | 3.7E-107 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Asymmetric cell division | The asymmetric division of cells to produce two daughter cells with different developmental potentials. It is of fundamental significance for the generation of cell diversity. | ||
| Biological process | Radial pattern formation | The regionalization process that results in defined areas around a point in which specific types of cell differentiation will occur. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. | ||
| Biological process | Leaf development | The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure. |
Expression pattern of LotjaGi4g1v0094600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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