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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0096600 |
| Transcript ID | LotjaGi4g1v0096600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcriptional adapter 1; TAIR: AT2G14850.1 transcriptional regulator of RNA polII, SAGA, subunit; Swiss-Prot: sp|Q6NWA8|TADA1_DANRE Transcriptional adapter 1; TrEMBL-Plants: tr|K7KPE5|K7KPE5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0096600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13007537..13011536) extracted from Lotus japonicus Gifu genome v1.2.
CCACCATTTCCTTTCCTATGATTGGCAGAAAGAGTCCTAGACGAAAGTTAACCATGTTAGAAATTGACAAAAAAAAAAAA ACATGTTAGAAAGCATTTCAAAAGCCACGTGCCTTTGACCAAAACGACTTCCAACTTCGAAGCTTCGGAAAGGTCAAGGT TCCATCGTATCAAACCCTAATCTTCCGCTTCAGAACCAAAGCTTCTACTCTAGTCTTCCAATTATTGCAATCGAATCAAC CGGATCAATCTCAATTTCCACTTTAAGGTTGTTCCTCATTCTCCTTTTACTCCATTTCTCTGTTTTTCCAGCTTCATACT GTGTTGTCAATTTTCGTGTTTTGATCAATTTTAGGTATTGAATTTTATTCAATTTGCGATTTGAGTTAGCTTAGCCACTG TTTTGATGTATAAATCGTAAATTATTGCTTGTTTTTACTTCCTGCTGTGAAAAACAGCGCATTTTGTAGTTCAATTTGTG ATCTGTGATTTTCAATTGTGAACATAAACAGTGATGATTTGACCATTAAGTTATTGGATTTTCAATTTTTTTTAGCTTTG AAAATATTGAAATCTGGGTTTTGGCTAATTTGCTGTTTTCAATTCAATAGCTGCTTGCCTGCTTGTATCGGTTGTATGAT TTGTTTTTATTAATATTTGGTCAAGTAGGATGCCGGCAGCGCGGTATTTTTCTCCCGTAGACACGTTAGAGCAGAAGTTG CAGATTGAAAGGAAGCTTGGAACTGTGAAAGCGTGCAAGTACTTCAATCTTCTCACGAGATTTCTCAGTGTCAAGATAAG CAAACATGAATTTGATAGACAGTGCAGGGCGACTATTGGTAGGGAAAATATCCATCTTCATAACCATTTCATAAGGTCAA TCTTGAAGAAGGCAAGTCTCTCCAAGAGAGGCAACATAATAGGAAGTTCTTTGAATGTGAAAATTCCAAATGGGTGTAAT GATCTTCAGTTTCTGTGCAAGGATTTTCTTCAATCTCCTCGAAAAGTCAGGACTCCGAGTTTGCGTGACCGTAGATTCAA GGATCGTCCCAGCCCTCTTGGTCCTAATGGGAAGAACGTGAACATTGGGTTTGAGGATTCAGTTCGTGAAATTCATGAGC AGCAAAGTAATAAGGAACTAGATTCTGCAGCTAGCAGGATTCCCCTCTGCGTGGAAGATGGGGAGGAGGTTGATCAAGAT TCTGAGAAGGTGAACATTTATATGAGGAGTCCTATTCAGCCACCTCTTGCAATTCCTACCTACAATAAAGGAACTCGTAC ACTGTTACATAATGGATTACCATCTGGCACTGATACCTGCCAAAGTATTGGCGAGCTACCTGATACGCCCTCTTTGACAA AAAGGTTGGAGCAGAAATTGGAAATGGAAGGATTTAAGATCTCTGCTGATGCAGCGGCCTTGATGAATAAAGCACTTGAC ACCTACCTCAAAAGATTGATAAAACCATGTTTAGATTTAGCCGCTTCAAAGGCTGTAAACAGATCTAATGGTCCAATACA ACCTGGCTTGAATGAGCAAATTGGATCTGTTTCTGTCTCTGACTTTAGAACAGCAACAGAGTTGAATCCTAACATACTAG GGAAAGATTGGTCCCTACATTTAGAGAAGGTTACAGGCTCAATATTGTATTGAACAAAGCTTTATGAGTTTTCCTCCAAG TAATAATTAATAATATTGGAATGGGTTAATTTACTCTGATATTGATTTTTAACTCTAAACATTGCTGACGTACAGTGGAA ATAAGTTTTGAATGTTTATTGAATTGGTGGGAATGTCTTTTTGGTGTCATAGCTCTTGATTTTATTAAGATTTTTTAATA AATCACATATTCAGGTTTTCTGGGCTTAACTTGTGTTCCTTGGCGTTCTGTATTTTAGGTATCATTGATGAGGTTGTGTG AGAAATTGTAGTTTCTTTCAATTACATGGTTTTTATATGTAAACACTATACTTCTGTTTCTCCTCTATGTTTAGTTTATG TATTTTTTAGAGGTCTGAAATCTGAATAACATAATAAAAGAAAAAAGAGGACCTTAAATAAACAATAGTTTCTCAATAAT GCATATTTAAACAGTAACAACAAGTTTTCTGATTTTAGCTGTGCTAGTTAGGTCTCTACAGATGTGAATGTAATAGTGTT CTAATTTAAGTTTTTATCACAAGAGATATTTAAGTAATATAACTATTGTAGGGGAGACATGTTTCCTTTTCACCTGTAGA ATTTCCTCTTACAAAATTGCATTTTTTGCTGTTGGTATAGAAGACATGAATGATTACATACTTTGACTTAGAATACAAGC TCTTGGTTTCTGGTCTTCTGCACTCTTTATTTGCATTGGATATGGTATCAGCATGTTTATTTTAATTTTTTTTCCTTAAA CTGTCTATTTTTTATTTATGAATGTTCAAGTTTACCTCAGGTTGAAATTAAATCTAACATTATAGTCTAATAGATTCTAA CCTAAAGCTCCACTCATCTATTGAGTTTTATTTTAGTGGTTGGGACATGATTATCATTTTGAGATGCCTATGTGATTGCA ATCTTATATAATTAAGAATCTTGAAGGTTAACTAAACGTTGGCACTATGCTTGAAAAACACATTAATTTTAGATATTGTT ACCTTTTCTATCATATATCACTTATGTCTACTTGAATGTAAATTCTTTATTGGATTCTGATTATTAGTGTATGAATTAGT TGTTTGATTATTTTTCTTCCTTTTTATATGTGATGTTTTATGAGTATATAATTGCTTCCTGCATGCTTTTGTGCTTGTCT AGTCTTTGTAATTGCCCTACATATCACATTGAAAGGTCTGCCTTGTGATGTAGAATTTGGCCTTTAAGTCAGAAGAATAG GGTATCCTAGCCTTTCTCAATGAATTTATGAACTTGATTTGTGGAGAATTGATTAGAGGTAGTGATTTTATCTTTTTAAG GGTTATTTACCAAGTAAATGATATGTCTCTTCCCTAGTTGCAGAGTGTGCCCTTCAACAAATTTAGAGCATTCCTTGCAG ATTGTTTATGTTAAGTGATGATGTTTATTTTTGTTATGGGTATGTCATTTCAACATTGTCTTTTGAGTGTGTTGATTCTT GGTCACGCCAGGCATCAGCCTAACTGTGGCTTCTTAAATTATTTTGTTGAAGAGTCTTAACTCACAATGAAGTTGCATAG GGAGCATGGTAATTGAGAAGGTAAGCTTGTTGAAGAGTCTAGACTTCTTTCTCTTCAACCTGAGTTGGCTCAACTAATTG AAGGGATATATAAACAGATCATCTTATGTTTATTTTACCTGAACTTTTCATGCGGAAATTGTGGATATCTTCCTGTGCTG TTCACAAAATTATGATGAGGTGCCACTTATTTATTATCTATGAAGAAAATCCATTCTCTTGTACACCCTATGTGCATGAG ACAAAGCCCCATTGTACCACTATCACGTGTATGCAACTCTAATTCTGTAAGCACTGAAAACTTTGTATACTGATTTAGAA CTTAGCTTGTGTTTCTTCTTTCTTTCTGCTCCAGGGTTTCTTCTTTCTGCTCCAGTATTTGACAATAGGGATTGTACCAG TAAAGCTTCCTAGACCTTGCATTGGTTCAATGTATCTCTCCATGCTCATGCACTTCAATGATTTGAAGGAAATTTCAGGT GCTCTTTACCTGTTAAGAAGCTTACCGAATCTACAAGAACTAGAAACTTTGATGAGTACTCATTACAAGTTCTGTTTAAC TTGACTCTGCTTACTGATTTGCAGTTTGAAACATTCTAATCTTGTTATTATTGAGTTATTAAGCCCTAAAAATTTCCATG TGGTTTTGTTTTGAGAATTTGTCGACTGGTTTTCAAGTTCTGGATCTAGTGTTTTGAGTTTTTCTAAGGCTTTCACACTA TTACATTATGATTGCTTGTAGGCTCGACTGAAAAGCAAAAAACTCTCAATAAAATGAGTTGAAAAATAATTCCACTTGCT
CDS sequence (LotjaGi4g1v0096600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGGCAGCGCGGTATTTTTCTCCCGTAGACACGTTAGAGCAGAAGTTGCAGATTGAAAGGAAGCTTGGAACTGTGAA AGCGTGCAAGTACTTCAATCTTCTCACGAGATTTCTCAGTGTCAAGATAAGCAAACATGAATTTGATAGACAGTGCAGGG CGACTATTGGTAGGGAAAATATCCATCTTCATAACCATTTCATAAGGTCAATCTTGAAGAAGGCAAGTCTCTCCAAGAGA GGCAACATAATAGGAAGTTCTTTGAATGTGAAAATTCCAAATGGGTGTAATGATCTTCAGTTTCTGTGCAAGGATTTTCT TCAATCTCCTCGAAAAGTCAGGACTCCGAGTTTGCGTGACCGTAGATTCAAGGATCGTCCCAGCCCTCTTGGTCCTAATG GGAAGAACGTGAACATTGGGTTTGAGGATTCAGTTCGTGAAATTCATGAGCAGCAAAGTAATAAGGAACTAGATTCTGCA GCTAGCAGGATTCCCCTCTGCGTGGAAGATGGGGAGGAGGTTGATCAAGATTCTGAGAAGGTGAACATTTATATGAGGAG TCCTATTCAGCCACCTCTTGCAATTCCTACCTACAATAAAGGAACTCGTACACTGTTACATAATGGATTACCATCTGGCA CTGATACCTGCCAAAGTATTGGCGAGCTACCTGATACGCCCTCTTTGACAAAAAGGTTGGAGCAGAAATTGGAAATGGAA GGATTTAAGATCTCTGCTGATGCAGCGGCCTTGATGAATAAAGCACTTGACACCTACCTCAAAAGATTGATAAAACCATG TTTAGATTTAGCCGCTTCAAAGGCTGTAAACAGATCTAATGGTCCAATACAACCTGGCTTGAATGAGCAAATTGGATCTG TTTCTGTCTCTGACTTTAGAACAGCAACAGAGTTGAATCCTAACATACTAGGGAAAGATTGGTCCCTACATTTAGAGAAG GTTACAGGCTCAATATTGTATTGA
Protein sequence (LotjaGi4g1v0096600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPAARYFSPVDTLEQKLQIERKLGTVKACKYFNLLTRFLSVKISKHEFDRQCRATIGRENIHLHNHFIRSILKKASLSKR GNIIGSSLNVKIPNGCNDLQFLCKDFLQSPRKVRTPSLRDRRFKDRPSPLGPNGKNVNIGFEDSVREIHEQQSNKELDSA ASRIPLCVEDGEEVDQDSEKVNIYMRSPIQPPLAIPTYNKGTRTLLHNGLPSGTDTCQSIGELPDTPSLTKRLEQKLEME GFKISADAAALMNKALDTYLKRLIKPCLDLAASKAVNRSNGPIQPGLNEQIGSVSVSDFRTATELNPNILGKDWSLHLEK VTGSILY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 322 | 322 | 6.4E-133 | – | |
| PANTHER | 1 | 322 | 322 | 6.4E-133 | ||
| Pfam | 10 | 270 | 261 | 6.0E-50 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | SAGA-type complex | A histone acetyltransferase complex that acetylates nucleosomal H3 and H2B and is required for the expression of a subset of Pol II-transcribed genes. The budding yeast complex includes the acetyltransferase Gcn5p, several proteins of the Spt and Ada families, and several TBP-associate proteins (TAFs); analogous complexes in other species have analogous compositions, and usually contain homologs of the yeast proteins. |
Expression pattern of LotjaGi4g1v0096600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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