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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0101500 |
| Transcript ID | LotjaGi4g1v0101500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT2G23320.1 WRKY DNA-binding protein 15; Swiss-Prot: sp|O22176|WRK15_ARATH Probable WRKY transcription factor 15; TrEMBL-Plants: tr|I3T1D3|I3T1D3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0101500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:13909261..13912426) extracted from Lotus japonicus Gifu genome v1.2.
TTGACGGTAAAAGCTAACAAAGTAGCGTGATGACAGAGCAGTGGACCAAACAAACCGAATCCTATGGTACCCATTTGACC AGGTTACCCTATTACCATTAATACCAAACCCTCTTTTTCTTCTTCTCCTTCTTTGTCAACACCCTTTTCTCTCTCTGTTT CTCCTTCTTCTTTCATGGTGTTTCTTCTGCAATAACTACTATTATGGCAGTGGAGCTCATGACGGGTGCTTACAGTTTCA CATCCAAATCCGAAGATAATGCTGTCCAGGAAGCCGCTTCTGGTTTGGAGAGCGTTGAGAAGCTCATCAGGTTGCTGTCT CAGACTCAGAAGCAGTTTCATCATCATCACTCTTCTCCTTCTTCTTCCTCTGCACCTCATAATCCCAACCTTACTTCCAT AGAAATCGAGAACGATTGCAGAGCTGTTGCGGATGTTGCAGTTTCCAAGTTCAAGAGGGTGATTTCTCTTCTGGGTCGAA CCAGAACTGGCCATGCTCGCTTCAGAAGAGCTCCTCTGCCTCTTGTTCCAATTAACCAAGTCCCAAAAACAGAGCACCTT CCTTCTGAGCCTAGAATCTTCAACGCCATCCCTTTGCAGCAGATCCCACCCTCCACCGCCACCCTCCACCACCACCACCA CAGAGAACCCCCCGAAATTGGAGCAGCAACCACCGCCACCCTCGAGAGGAAGGAATCTTCTAAGACCCTCAATTTCTCAT CCTACACCTCTGCTCCAAGCTCCTTCATCTCCTCCCTCACTGGCGACACCGACACCAAGCACCACCCGTCGTCGTCGTCT CCGCCGCCATCAGGGTCTTTTCAGATCACGGCAGGGAAGCCTCCTCTGTCATCATCCTCCTTAAAGAGGAAGTGCAGCTC TGAAACCTTGGGTTCTGGAAAGTGTGGCAGTTCATCTGGACGCTGTCATTGTTCCAAAAAAAGGTAGTTGAAGTTGATTG CTTAATTAAGATTTGGGTCTTGCTTAGAAATCGTTCCTTTATCATTTCAGGAAAAATAGTTCAAATTTTTTTTTCAAATT TTAGTAAATGCCCTGTTCTCAACTTCTCAATTTGTGCATACAGCAGGAAAATGAGGTTGAAAAGGGTTGTGAGGGTACCA GCAATAAGCTTGAAGATGGCTGATATTCCACCAGATGATTATTCCTGGAGAAAATATGGTCAGAAACCTATTAAAGGATC CCCTCATCCAAGGTACATCATCAATTATACCAATATAATTTGAATTTAATCTTCTTCCCCTGTTTATGACTCTGTTTATG CTTATTGGTATGTGTTTGTGTTGAGATATAGCTTAAACTTGCTTAAATTGATCAAATGTTTGTGATTGATTATTGATTAG TGATTAGTTTTCTTCTTATGGTGTTTTTTTGAGATCTATATTGAATCTGGGTGTGTGATTTGTTAGTGTTATTACTGAGT TGTTGTTTTCTCTTGAACAAAAACAGGGGATATTACAAGTGCAGTAGTGTGAGAGGTTGCCCAGCAAGAAAACATGTAGA ACGAGCCCTGGATGATGCTGCTATGCTGGTAGTGACCTATGAAGGAGAGCACAATCACGCTCTCTCTGCAGCAGATGCTA CTAATCTCATTTTAGAATCATCTTAAGTTCATGTTAATCAATGTGACAAGCAATTTCAAAGGTAATTGATGTTGATGAAT GATGATCATTAGATTTTAGCTAAAGGCTGTTTGGTTTGTGTTACAATATTGGATTGGATTCCTTTATCTTTTTCGTTGTC TTCGAGGCTGAAACAAACAAACAAACACTGTGAAGAATCCATTACCATTATAGTACTAGTAAATTGTTTTTTTTTTTTTG GTTGGAAAGAAAAGAAAGTCAAGGTGATGGTGGATTTGGTAACGGGTTTGAATCTGAAAGTGGGGAAAAAAGTAAAGTAA AGCAAGTGGGTTGATTTGTTCTATTCTTTTTTTGTTTTCCACTGTTTGGGGTTACTTTATCTTTGGTGCTTTGTGTGTCT TGGATTCTCATTAACTTTGGGTTGCGTTTAAATGTGCATAGTGAAGGGGTTGTTTTTGTTTGAAAAAACAATAATAATAA TAATAATGAATGAAAGGGACTTGGTCAAAGAATTGGACAGAAGAGGACGGACATGTCGTGTATAGGACGGTTGACTGAGT GAAAGAGTGGGGTTGAAGGATTTGGATATTCTACAGTTTGTGGGAAACTGTTCTCAGTCTCATTCTCATTCATTCAAACT TCAAAGGAGTATTTAATTTATTATTAAAATAAGCAAATCCAATAAATGTTTTTCAGAGTAGTATTATCTAAATTTCAAGA ATAGTAAATACCTTTATTTTCAGTAATTAATGAATTTATTATGTTATAATAATTAATTTTTATTTTTTTATGTTTTCTAG TTACTACATTATTTAAGTAATGTTTGAAAATTCTTCTACGTTTTGATCCTAATTAATTTTGAGATTTTTATTTTTCTGGA AGTAGCTTCCAAGTCTTAAGAATTGAATATGGGAAAATGTAAGTAGATCCAAAGTCTAAATATGTTATAAAAGGAGCTTA ATATATTTGAGTTTAAACTAATTGATTATGTGAAAGTATAAGTAGATCATACCATGTTGTAAAATAACCCTTAACAATAG TCCAATATATTCAAACTATACAAGTATAAACGTTAGGGGGTGCAGTTTTTGTTTTCTACTTGAGTTTAACTCTTTAAAGT AAGAATGAAGCCATTGAATAAAATAGCTACCCTAATTACTTTTGAAATTAATAATTGAATTTTAAATAATTTTATAAATT GCATAGTCACAATTTCCATTGTTTAAATCAATGCTTAAATGATATTTAACATGAGGCATATTAGGCAAGAGAAATGCTTA TTATAAGAGATGAGATAATTAAATTATGGTCGTACAACCATAAAAAAATGGTTGAGATTAAACGGGTTTAGTAATCATAT GATTTTTTTTTTATAAAAGTCACGTAAGTGTATGTTTTAATATAAACAATCCATTGTTAGTTCAATGGTCGGCTAAGATT TAACTCTCTCATTTCTCATTATAAACGTTCTCCTTACTCTATATATCTACTAGTTGAATGCAATGTAAACAAACTTTCAT CTTAAATTATGATAGAAGTTTAGTTCATTTTTATCTCTAACTAAGC
CDS sequence (LotjaGi4g1v0101500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGTGGAGCTCATGACGGGTGCTTACAGTTTCACATCCAAATCCGAAGATAATGCTGTCCAGGAAGCCGCTTCTGG TTTGGAGAGCGTTGAGAAGCTCATCAGGTTGCTGTCTCAGACTCAGAAGCAGTTTCATCATCATCACTCTTCTCCTTCTT CTTCCTCTGCACCTCATAATCCCAACCTTACTTCCATAGAAATCGAGAACGATTGCAGAGCTGTTGCGGATGTTGCAGTT TCCAAGTTCAAGAGGGTGATTTCTCTTCTGGGTCGAACCAGAACTGGCCATGCTCGCTTCAGAAGAGCTCCTCTGCCTCT TGTTCCAATTAACCAAGTCCCAAAAACAGAGCACCTTCCTTCTGAGCCTAGAATCTTCAACGCCATCCCTTTGCAGCAGA TCCCACCCTCCACCGCCACCCTCCACCACCACCACCACAGAGAACCCCCCGAAATTGGAGCAGCAACCACCGCCACCCTC GAGAGGAAGGAATCTTCTAAGACCCTCAATTTCTCATCCTACACCTCTGCTCCAAGCTCCTTCATCTCCTCCCTCACTGG CGACACCGACACCAAGCACCACCCGTCGTCGTCGTCTCCGCCGCCATCAGGGTCTTTTCAGATCACGGCAGGGAAGCCTC CTCTGTCATCATCCTCCTTAAAGAGGAAGTGCAGCTCTGAAACCTTGGGTTCTGGAAAGTGTGGCAGTTCATCTGGACGC TGTCATTGTTCCAAAAAAAGCAGGAAAATGAGGTTGAAAAGGGTTGTGAGGGTACCAGCAATAAGCTTGAAGATGGCTGA TATTCCACCAGATGATTATTCCTGGAGAAAATATGGTCAGAAACCTATTAAAGGATCCCCTCATCCAAGGGGATATTACA AGTGCAGTAGTGTGAGAGGTTGCCCAGCAAGAAAACATGTAGAACGAGCCCTGGATGATGCTGCTATGCTGGTAGTGACC TATGAAGGAGAGCACAATCACGCTCTCTCTGCAGCAGATGCTACTAATCTCATTTTAGAATCATCTTAA
Protein sequence (LotjaGi4g1v0101500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVELMTGAYSFTSKSEDNAVQEAASGLESVEKLIRLLSQTQKQFHHHHSSPSSSSAPHNPNLTSIEIENDCRAVADVAV SKFKRVISLLGRTRTGHARFRRAPLPLVPINQVPKTEHLPSEPRIFNAIPLQQIPPSTATLHHHHHREPPEIGAATTATL ERKESSKTLNFSSYTSAPSSFISSLTGDTDTKHHPSSSSPPPSGSFQITAGKPPLSSSSLKRKCSSETLGSGKCGSSSGR CHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDAAMLVVT YEGEHNHALSAADATNLILESS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 342 | 330 | 9.3E-127 | – | |
| PANTHER | 13 | 342 | 330 | 9.3E-127 | – | |
| MobiDBLite | 41 | 64 | 24 | - | – | |
| MobiDBLite | 184 | 243 | 60 | - | – | |
| MobiDBLite | 184 | 241 | 58 | - | – | |
| Pfam | 221 | 267 | 47 | 1.8E-17 | ||
| Gene3D | 257 | 331 | 75 | 3.0E-29 | ||
| ProSiteProfiles | 264 | 330 | 67 | 30.435 | ||
| SUPERFAMILY | 266 | 328 | 63 | 3.01E-26 | ||
| SMART | 269 | 329 | 61 | 2.3E-37 | ||
| Pfam | 271 | 327 | 57 | 4.7E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi4g1v0101500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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