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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0109700 |
| Transcript ID | LotjaGi4g1v0109700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dof zinc finger protein; TAIR: AT5G65590.1 Dof-type zinc finger DNA-binding family protein; Swiss-Prot: sp|Q9LSL6|DOF57_ARATH Dof zinc finger protein DOF5.7; TrEMBL-Plants: tr|A0A0K8K5W4|A0A0K8K5W4_CAJCA Dof protein; Found in the gene: LotjaGi4g1v0109700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:15600763..15602677) extracted from Lotus japonicus Gifu genome v1.2.
TGGGGTGACCTAATTGGAATGTTGAAACTGAATGCTATCTTTCTCATACAGTGTGTAATAATAAAATAAAATATATGTAG TATATTGTAGGTAGCTAGCCCCCAATTCTATATATTCTTTTGGAACAACTAGGAGACTGCCAACGAAGCTGTCCTACTAG CAGCATAAAACAGCAAAATTGAATTCCCAAAGGCGAGTCTCATCATACAATTCTACTCTCTCTCTCTCTCACCCACTTTA CCTCTTTCGCTTTTCTCCACTAACACAACACAAAAAGACTCACCACCCCTTTTGCTTTTGGCGTTTTTGGATTGTTGTAG ATCCACAAAATTAAACAAGATGATCCAAGAACTGTTGGATGGTGGTGCAAGCCTCATAGCTGGAGAAAGAAAATCCTCCA ATAATCCAGTAGGAGGAGTTTTGCTACCATCACCACCATCTCAAACCCCTTCTTCCACAACAACCACTCACACCACCACA TCTACACCTACAACCACCACCGTCACCGCCACCACCACTGCATCAGAGAACCAAAACCTGCGGTGCCCTCGATGCGACTC CTCGAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGCCGCCGGTACT GGACCAAAGGCGGCGCTCTCCGGAATGTCCCCATCGGTGGCGGCTGCCGGAAAAACAAGACCATCGGAGTAGCAAACTCT GTGGCGGCCAAGACAACCACCAGCGCAACCAGGATGAAAACGGTTGCGTCGGAGCTCGGAAGATCACCGCCATCAGGGCT TGGCCATGGGTCATTCGAAGGCGAACATGTGCTGCCGCCTCCGACTCATGGCCAAATCCTGTGGGGCTCTCCCCAGAACT CTCATCTCTTGGCTTTGCTAAGAGCTAGCCAAGCCCAAAACCAAAATCAAAGCCCTAACCCTAACCCTATTGCAGTGAAG GAAGAAGGTAACAACAACTTCATGGGCCACTTGGTGACTGACCCTTTGGTTTCAAATGGTCTTCTGAATCATCAATACAG AAGCCTAGGCTATGATGCTCATGCTAGTGTTGCTGGCCATGCTCCTACACTTGGGTTATGCAGTTCATTTTTTAGGACCA ATATTCAAGACCAAGCTCAACAGCAACAACACAATGGAGGCTTTGTGCTTGGATTACATAACCACAACAGTGGAATCCAA GAGCTTTACCAGAAGCTGAGATCTTCAGCTTCAGCTAATAACTACTGCGGCGATGCCTCGCCGGTATTTCTCGGGAACGT GGCGGCTTCTAGTTATTCCTCTTCCATGTCCAACATTTTGGAGCCAAATTCAGTTGCAGGAGGAGGTGAATTGGGGTACT GGAATCCTCCAACGCTTTCGTGGTCTGATCTTCCAACCACAAATGGTGCATATCAGTGACATTAATGTTAAACTACTTTT CTCTCCAATTTCTTCTTTTTCTAATTTCCATTAGATAGTAGCATAGAGGTACTTAGTTTGCTTCCCTTGTTGTTGGTTTG TTTTTGGGTGGTATATGGATATGGATCTAGCACAAGCTGTTGTTTTTTCCCCCCTTCCTACTCTCTTCTTCTATAATTTT CTGTTTTCGGTGTAAGTTGGTTAATGGTGTGTTTGGCTATGTTATCCATGGTTAATTAGAGGACCAGAGATCGAGTTTAA AATTTCAGGAAAAATGCAGTGTATTTTGAATGTTCATATTAGATGGTCTCTTCATTTTATTAGTACTGTAGTTTTAATTT GCTTATTTTCAATTTTTCCCAGTCTAATTTCTAATTAAAATTTGAATAATGATACATGAACATCCAAATATTTTAGTCAT TCAATAACCATCTTATTTTTCTCTATCTCACTTTTCTTATATTAACACATCAATTTTTGTCTCTCTTCTCTTCAT
CDS sequence (LotjaGi4g1v0109700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCCAAGAACTGTTGGATGGTGGTGCAAGCCTCATAGCTGGAGAAAGAAAATCCTCCAATAATCCAGTAGGAGGAGT TTTGCTACCATCACCACCATCTCAAACCCCTTCTTCCACAACAACCACTCACACCACCACATCTACACCTACAACCACCA CCGTCACCGCCACCACCACTGCATCAGAGAACCAAAACCTGCGGTGCCCTCGATGCGACTCCTCGAACACCAAGTTCTGC TACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACATGCCGCCGGTACTGGACCAAAGGCGGCGCTCT CCGGAATGTCCCCATCGGTGGCGGCTGCCGGAAAAACAAGACCATCGGAGTAGCAAACTCTGTGGCGGCCAAGACAACCA CCAGCGCAACCAGGATGAAAACGGTTGCGTCGGAGCTCGGAAGATCACCGCCATCAGGGCTTGGCCATGGGTCATTCGAA GGCGAACATGTGCTGCCGCCTCCGACTCATGGCCAAATCCTGTGGGGCTCTCCCCAGAACTCTCATCTCTTGGCTTTGCT AAGAGCTAGCCAAGCCCAAAACCAAAATCAAAGCCCTAACCCTAACCCTATTGCAGTGAAGGAAGAAGGTAACAACAACT TCATGGGCCACTTGGTGACTGACCCTTTGGTTTCAAATGGTCTTCTGAATCATCAATACAGAAGCCTAGGCTATGATGCT CATGCTAGTGTTGCTGGCCATGCTCCTACACTTGGGTTATGCAGTTCATTTTTTAGGACCAATATTCAAGACCAAGCTCA ACAGCAACAACACAATGGAGGCTTTGTGCTTGGATTACATAACCACAACAGTGGAATCCAAGAGCTTTACCAGAAGCTGA GATCTTCAGCTTCAGCTAATAACTACTGCGGCGATGCCTCGCCGGTATTTCTCGGGAACGTGGCGGCTTCTAGTTATTCC TCTTCCATGTCCAACATTTTGGAGCCAAATTCAGTTGCAGGAGGAGGTGAATTGGGGTACTGGAATCCTCCAACGCTTTC GTGGTCTGATCTTCCAACCACAAATGGTGCATATCAGTGA
Protein sequence (LotjaGi4g1v0109700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIQELLDGGASLIAGERKSSNNPVGGVLLPSPPSQTPSSTTTTHTTTSTPTTTTVTATTTASENQNLRCPRCDSSNTKFC YYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKTIGVANSVAAKTTTSATRMKTVASELGRSPPSGLGHGSFE GEHVLPPPTHGQILWGSPQNSHLLALLRASQAQNQNQSPNPNPIAVKEEGNNNFMGHLVTDPLVSNGLLNHQYRSLGYDA HASVAGHAPTLGLCSSFFRTNIQDQAQQQQHNGGFVLGLHNHNSGIQELYQKLRSSASANNYCGDASPVFLGNVAASSYS SSMSNILEPNSVAGGGELGYWNPPTLSWSDLPTTNGAYQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 10 | 355 | 346 | 3.6E-77 | – | |
| PANTHER | 10 | 355 | 346 | 3.6E-77 | – | |
| MobiDBLite | 14 | 64 | 51 | - | – | |
| MobiDBLite | 24 | 64 | 41 | - | – | |
| Pfam | 65 | 121 | 57 | 1.6E-32 | ||
| ProSiteProfiles | 67 | 121 | 55 | 29.506 | ||
| ProSitePatterns | 69 | 105 | 37 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0109700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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