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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0110500 |
| Transcript ID | LotjaGi4g1v0110500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dof zinc finger protein; TAIR: AT3G50410.1 OBF binding protein 1; Swiss-Prot: sp|Q39088|DOF34_ARATH Dof zinc finger protein DOF3.4; TrEMBL-Plants: tr|K7K6R9|K7K6R9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0110500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:15775384..15777319) extracted from Lotus japonicus Gifu genome v1.2.
CCGTGCCCAACTGGCCAACTGTCCATACGGATAAGACAGGACAAACGCATATAATATTGGAACCTGGTCAGGTTAACTTG ATCAATGGGATCAGATAAGCTAAATTGGCTAATTTATGAACTGTTAGGATAACAATCATGTTAATTTATTTTACTTGTAG GGTACTAGTTTCATGGTTCAAGACTAACTAATTATCTCAAAGGCAACTGCATGCATCGATCTAATCTAGCCTAATCAAGC ACTATAATACTCCTACCAAATGAGATGTTGTTCCTTACAATGTCCCCAAATCCAATCCAATCCCTGAACCAAATAAAAAG AAGAGAGAATCACACTTTGATTGAGAGAGAGAGAGAGTGGGAGAGTGTGAATCAATCAGAAGTTGGTGGTGGTGTGTGTG TAGAGCAGAGGCGCAGCCCTATTAGCCGACCCAAGCAGTGTGAGGAGCCGACCGAAATGTCGTGCTTAACAGAACAGTAC TGTAATAAAGCTGATCCCACTCTGCTTCATATAAGCCTCAGAAAATGTCTCTGTTTCCACCACAGATATTCTCTCTGACT CTTTGCTTTCTCGTCTTAATCACTCTCTTTCTCTCTCTCTCTTCCTTGTTCCCCATAAAACCACCCCTTCCCATTCCATT TCCATTTACCCCACCACACGCACACTCACTCATCACACTTCTCCAACAACAAACCACTCCACAACATTACACTCATTTCA TTTCCCATTTTCATTTTCCCTTCACACTCAAAACAAACCAAACCAAGTTTTTCACTCTTCACTCTTTCAAGTTTCATAAC CACCCCAATGCCGTCGTCAGACTCCGGCGAGACTCGCCGCTCAACCAAGCCCCAAGTCCGCGCGGCCGCACTCCCCCCGC CGGAGCAGGAGAATCTCTCCTGCCCACGCTGCGACTCCACAAACACCAAGTTCTGCTACTACAACAACTACAACTACTCT CAGCCTCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACCCTCCGCGACATCCCCGTTGGCGGCGG AAGCCGCAAGAACGCCAAGCGCACCCGCACCCACCACTCCACCTCCACCGCCACTTCCGCAGTCACCTCACCCTCCGACA ACCCCTTCCCGGCGATGGTCCCTGTCACCGGATGCCCCGTCGCGTTCAGCGGCGGCGTCGACGGCGAAATCAAACAAACC GTCAACGTTTGCGGCGGCAGCTTCACCTCGTTGCTGAGCAACACTCAAGCCCCGGGGTTTCTGGCTCTGGGTGGGTTCGG GCTTGGGCTTGGACATGGGTTTGAAGACATGGGCTTCGGGATCGGGCGAGCGGGTTGGGCTTATCCCGGAATGGTGGACG GAGCACACATCGGCGGCGGCGGTGTTGTTTCGGCACCCGGCATCGGGAACTCGTGGCAGTTGGAAGGTGGCGGCGATGGT GGGTTTGTCGGTGGAGACTGCTTCTCTTGGCCGGGACTTGCTATTTCAACACCGGGAAATGGTCTCAAATGAAAACTTTT TCTCTTTTGATTTGAGAGGGTGTGTTTATGGTGGTTCAATATTAGGGTTTATGGTATGGTTTTCTGGGTATAATCATCTT TATGGTCATCAATTTAGTTTTAGTACTACACCTATGACTTTTTTTTGGGTTTAATTTTCTACCTTTTGGAACTCTTTTGT CATCATGTGTATGCTTACTGGTGTGAAATGAATGACTAAGCTTGTGTTTGATTCTATTTGTGGCTGACACGATTTTGTGG TTTGATTTGCTTATTTAATCATGCCAAAAAGCTGGATTTGATTCTCAGTGAAGATAATGAAGTCATGGCTAGACGTATAG CTAGTGTTTGTTCTATGTTGTTTGAGGAGGAATGAATGAGATAATGATATAATCAATATTTTAACTTCATTAAGTGCTTT GTCAGTGATGTTGTCT
CDS sequence (LotjaGi4g1v0110500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGTCGTCAGACTCCGGCGAGACTCGCCGCTCAACCAAGCCCCAAGTCCGCGCGGCCGCACTCCCCCCGCCGGAGCA GGAGAATCTCTCCTGCCCACGCTGCGACTCCACAAACACCAAGTTCTGCTACTACAACAACTACAACTACTCTCAGCCTC GCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACCCTCCGCGACATCCCCGTTGGCGGCGGAAGCCGC AAGAACGCCAAGCGCACCCGCACCCACCACTCCACCTCCACCGCCACTTCCGCAGTCACCTCACCCTCCGACAACCCCTT CCCGGCGATGGTCCCTGTCACCGGATGCCCCGTCGCGTTCAGCGGCGGCGTCGACGGCGAAATCAAACAAACCGTCAACG TTTGCGGCGGCAGCTTCACCTCGTTGCTGAGCAACACTCAAGCCCCGGGGTTTCTGGCTCTGGGTGGGTTCGGGCTTGGG CTTGGACATGGGTTTGAAGACATGGGCTTCGGGATCGGGCGAGCGGGTTGGGCTTATCCCGGAATGGTGGACGGAGCACA CATCGGCGGCGGCGGTGTTGTTTCGGCACCCGGCATCGGGAACTCGTGGCAGTTGGAAGGTGGCGGCGATGGTGGGTTTG TCGGTGGAGACTGCTTCTCTTGGCCGGGACTTGCTATTTCAACACCGGGAAATGGTCTCAAATGA
Protein sequence (LotjaGi4g1v0110500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPSSDSGETRRSTKPQVRAAALPPPEQENLSCPRCDSTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSR KNAKRTRTHHSTSTATSAVTSPSDNPFPAMVPVTGCPVAFSGGVDGEIKQTVNVCGGSFTSLLSNTQAPGFLALGGFGLG LGHGFEDMGFGIGRAGWAYPGMVDGAHIGGGGVVSAPGIGNSWQLEGGGDGGFVGGDCFSWPGLAISTPGNGLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 7 | 230 | 224 | 7.9E-92 | – | |
| PANTHER | 7 | 230 | 224 | 7.9E-92 | – | |
| Pfam | 28 | 84 | 57 | 6.7E-33 | ||
| ProSiteProfiles | 30 | 84 | 55 | 28.984 | ||
| ProSitePatterns | 32 | 68 | 37 | - | ||
| MobiDBLite | 75 | 106 | 32 | - | – | |
| MobiDBLite | 89 | 104 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0110500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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