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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0111600 |
| Transcript ID | LotjaGi4g1v0111600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein family; TAIR: AT5G66560.1 Phototropic-responsive NPH3 family protein; Swiss-Prot: sp|Q94A73|Y5656_ARATH BTB/POZ domain-containing protein At5g66560; TrEMBL-Plants: tr|A0A151R6R9|A0A151R6R9_CAJCA BTB/POZ domain-containing protein family; Found in the gene: LotjaGi4g1v0111600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:15948401..15950786) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCCTCATCAGAAAAGCACAGCTCAAAAGGGCAAGCATGGTAAGATGAATAGCTTCCTCTCTTTGTACTTCATGCTTT TCATTTCTCCATTTTCTCAACCCAATTTCCACATTGCAGGTTCTGTACAACTGGATTGCCTAGTGACATTGTTGTTGAAG TGGATGACATGACCTTCCATCTCCACAAGGTAAATTAAACCTCAAACAAAACAAAACAACACAACACAACATAGTAGTAC CAATTTTCAACACACACAAGTGACACAAGCACATACCCAAAAACCCAAACATGGGTCTCTATTTCCAATTCTAGTACTGC CACCATTTTCACATACCCATTTCATTTCAGTTTCCTCTGATGTCAAAAAGTAGAAAGCTTCATGACCTGATAACACAGCA AGAAGAAGCAACACGTTCCACTCTCCCACAGCAGCAACAAGAAGAAGACGAAGATGAAGACGAAATCGTCGAAGAACAGC TTCAGGTGACATTCACCGACTTCCCCGGCGGCTCTGACGCCTTTGAAATGGCGGCGAAATTTTGTTACGGCGTCAAGACA GAGCTCTCCCCCTGCAATGTAGCTTCCCTTCGCTGCGCCGGCGAGTTTCTGGAGATGACGGAAGATTTCTCCGAAGACAA TCTCATCTCTAAGACGGAGCGGTTTCTCTCCCAGCACGTGCTCAGAAGCCTCGGCGACTCCATCAAAACACTGAAATCGT GTGAGCGGTTGATGCCTACGGCGGAAGATTTGGGAATCACGGAGAGGTGCATCGATTCCGCCGTGTCCAGAGCTTCATCG GCGGATCCTGCTTTATTTGGCTGGCCAGTCAGCGACGCCGCCGCTTCCGCTTCAAAACAGGTTCTCTGGAACGGAATCGA CGCCGCCGGAGAAACCTGGTTCGAAGATCTGGCGCTTCTGAGTTTGCCTCTGTTCAAGCGGTTGATTCTTGCGATGAGAC GCGCGGAGCATAGCGCTGAGATAATCGAGACTTGCGTGATGTATTACGCTAGGAAGTACATTCCCGGCGTTTCCAGATCG AGCCGGAAGCCGTTACCGAAGTCTTCATCGTCCTCCGTCGCGTCGGAGGCGGAGCAGAAGGAGATTCTGGAGACCGTGAT TTCGAATCTTCCACCGGTGAAGACTTCGAAATCCTCCACGGCGACGAGGTTTCTCTTCGGCTTGCTGCGAACAGCGAACA TACTGAACGCTTCTGAATCCTGCAGAGACGCGTTGGAGAAGAAGATAGGGTTGCAGCTCGATGAAGCCACGCTCGACGAT CTTCTCGTGCCGAGCTATTCGTATCTGAACGAAACGCTGTACGATGTGGATTGCGTGGCGAGGATTTTGAGCCACTTTCT GGAAGGTTTAGAAGCGGGAAACACCGTGGAAGGAGGCGACGCTGCGGCGAGGTCGCCGTCGTTGATGCTCGTCGGAAAAC TCATCGACGGTTACCTCTCCGAGATAGCCTCCGATGCGAATCTCAAGCCGGAGAGATTCTACACTTTCGCCATCTCGCTT CCCGATCAGGCTAGGCTCTTCGACGACGGTCTCTACCGCGCCGTCGATGTGTATCTCAAGGTATCAATTCCATTTCGAAT TTCAATTTTCTCAGATTCAATAAATTTGATGAGGTAACGACTGATTTTTCGATTTGCAGGCGCATCCATGGGTTTCGGAA TCGGAGAGGGAGAAGATTTGCGGATTGCTGGATTGTCAGAAGCTCACGCTAGAGGCGTGCACGCACGCGGCGCAGAACGA GAGGCTTCCGCTGCGTGCGGTGGTTCAGGTGCTGTTCTTCGAGCAGCTTCAACTGCGGCACGCAATTGCTGAGACGCTGG TTGCGGCGGAGACGGCGGCGGAGCCAGGGCGTCACTCGGCGGTGCTGGAACGGGAAGAGGAAGAGGAAGAGGGAAGAGAA GTGTTGCAGTTACGGTTAGGGACGGAGCACGTGCAGGAGGGGAACGGCACGTGGCGTGGGACGGTGAGGGAGAATCAGGT GCTGCGGTTGGATATGGATAGCATGAGGACGCGGGTGCATCAGTTGGAACGTGAGTGCTCGTCGATGAAGCGAGTGATTG CGAAGATTGATAACTCCGCCGTGGATGGCGGTGGTTGGAGGGCGTCGCTGGGGCGGAAGTTTAGTTGCAAGTTTAAGACT CAGGTTTGTGATTCGCAGCAGTCGACGGTTGTGGATAAACGCAAGGGACGCCATCACCACCGCGCGCCGCCGAAGAAGCA GCAGCATCCGCATCGTGATTAAGCACCATGCTAAAATTGCTCCTGTTGAAGTGAAGTCGATATCCACATGTAATTGTTCA CTTTTTTTCTTTATTTTTTCATCAATTTAATCTTTATTGACTGATACAATAATTTTGCTTAGTTAA
CDS sequence (LotjaGi4g1v0111600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCTCATCAGAAAAGCACAGCTCAAAAGGGCAAGCATGGTTCTGTACAACTGGATTGCCTAGTGACATTGTTGTTGA AGTGGATGACATGACCTTCCATCTCCACAAGTTTCCTCTGATGTCAAAAAGTAGAAAGCTTCATGACCTGATAACACAGC AAGAAGAAGCAACACGTTCCACTCTCCCACAGCAGCAACAAGAAGAAGACGAAGATGAAGACGAAATCGTCGAAGAACAG CTTCAGGTGACATTCACCGACTTCCCCGGCGGCTCTGACGCCTTTGAAATGGCGGCGAAATTTTGTTACGGCGTCAAGAC AGAGCTCTCCCCCTGCAATGTAGCTTCCCTTCGCTGCGCCGGCGAGTTTCTGGAGATGACGGAAGATTTCTCCGAAGACA ATCTCATCTCTAAGACGGAGCGGTTTCTCTCCCAGCACGTGCTCAGAAGCCTCGGCGACTCCATCAAAACACTGAAATCG TGTGAGCGGTTGATGCCTACGGCGGAAGATTTGGGAATCACGGAGAGGTGCATCGATTCCGCCGTGTCCAGAGCTTCATC GGCGGATCCTGCTTTATTTGGCTGGCCAGTCAGCGACGCCGCCGCTTCCGCTTCAAAACAGGTTCTCTGGAACGGAATCG ACGCCGCCGGAGAAACCTGGTTCGAAGATCTGGCGCTTCTGAGTTTGCCTCTGTTCAAGCGGTTGATTCTTGCGATGAGA CGCGCGGAGCATAGCGCTGAGATAATCGAGACTTGCGTGATGTATTACGCTAGGAAGTACATTCCCGGCGTTTCCAGATC GAGCCGGAAGCCGTTACCGAAGTCTTCATCGTCCTCCGTCGCGTCGGAGGCGGAGCAGAAGGAGATTCTGGAGACCGTGA TTTCGAATCTTCCACCGGTGAAGACTTCGAAATCCTCCACGGCGACGAGGTTTCTCTTCGGCTTGCTGCGAACAGCGAAC ATACTGAACGCTTCTGAATCCTGCAGAGACGCGTTGGAGAAGAAGATAGGGTTGCAGCTCGATGAAGCCACGCTCGACGA TCTTCTCGTGCCGAGCTATTCGTATCTGAACGAAACGCTGTACGATGTGGATTGCGTGGCGAGGATTTTGAGCCACTTTC TGGAAGGTTTAGAAGCGGGAAACACCGTGGAAGGAGGCGACGCTGCGGCGAGGTCGCCGTCGTTGATGCTCGTCGGAAAA CTCATCGACGGTTACCTCTCCGAGATAGCCTCCGATGCGAATCTCAAGCCGGAGAGATTCTACACTTTCGCCATCTCGCT TCCCGATCAGGCTAGGCTCTTCGACGACGGTCTCTACCGCGCCGTCGATGTGTATCTCAAGGCGCATCCATGGGTTTCGG AATCGGAGAGGGAGAAGATTTGCGGATTGCTGGATTGTCAGAAGCTCACGCTAGAGGCGTGCACGCACGCGGCGCAGAAC GAGAGGCTTCCGCTGCGTGCGGTGGTTCAGGTGCTGTTCTTCGAGCAGCTTCAACTGCGGCACGCAATTGCTGAGACGCT GGTTGCGGCGGAGACGGCGGCGGAGCCAGGGCGTCACTCGGCGGTGCTGGAACGGGAAGAGGAAGAGGAAGAGGGAAGAG AAGTGTTGCAGTTACGGTTAGGGACGGAGCACGTGCAGGAGGGGAACGGCACGTGGCGTGGGACGGTGAGGGAGAATCAG GTGCTGCGGTTGGATATGGATAGCATGAGGACGCGGGTGCATCAGTTGGAACGTGAGTGCTCGTCGATGAAGCGAGTGAT TGCGAAGATTGATAACTCCGCCGTGGATGGCGGTGGTTGGAGGGCGTCGCTGGGGCGGAAGTTTAGTTGCAAGTTTAAGA CTCAGGTTTGTGATTCGCAGCAGTCGACGGTTGTGGATAAACGCAAGGGACGCCATCACCACCGCGCGCCGCCGAAGAAG CATTAA
Protein sequence (LotjaGi4g1v0111600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSEKHSSKGQAWFCTTGLPSDIVVEVDDMTFHLHKFPLMSKSRKLHDLITQQEEATRSTLPQQQQEEDEDEDEIVEEQ LQVTFTDFPGGSDAFEMAAKFCYGVKTELSPCNVASLRCAGEFLEMTEDFSEDNLISKTERFLSQHVLRSLGDSIKTLKS CERLMPTAEDLGITERCIDSAVSRASSADPALFGWPVSDAAASASKQVLWNGIDAAGETWFEDLALLSLPLFKRLILAMR RAEHSAEIIETCVMYYARKYIPGVSRSSRKPLPKSSSSSVASEAEQKEILETVISNLPPVKTSKSSTATRFLFGLLRTAN ILNASESCRDALEKKIGLQLDEATLDDLLVPSYSYLNETLYDVDCVARILSHFLEGLEAGNTVEGGDAAARSPSLMLVGK LIDGYLSEIASDANLKPERFYTFAISLPDQARLFDDGLYRAVDVYLKAHPWVSESEREKICGLLDCQKLTLEACTHAAQN ERLPLRAVVQVLFFEQLQLRHAIAETLVAAETAAEPGRHSAVLEREEEEEEGREVLQLRLGTEHVQEGNGTWRGTVRENQ VLRLDMDSMRTRVHQLERECSSMKRVIAKIDNSAVDGGGWRASLGRKFSCKFKTQVCDSQQSTVVDKRKGRHHHRAPPKK H
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 180 | 180 | 2.0E-8 | – | |
| PANTHER | 7 | 631 | 625 | 2.4E-287 | ||
| PANTHER | 7 | 631 | 625 | 2.4E-287 | – | |
| SUPERFAMILY | 8 | 143 | 136 | 2.83E-13 | ||
| CDD | 13 | 138 | 126 | 5.05496E-41 | – | |
| Pfam | 21 | 145 | 125 | 2.6E-4 | ||
| SMART | 22 | 147 | 126 | 3.7E-5 | ||
| ProSiteProfiles | 22 | 111 | 90 | 9.537 | ||
| MobiDBLite | 55 | 75 | 21 | - | – | |
| ProSiteProfiles | 218 | 498 | 281 | 93.273 | ||
| Pfam | 219 | 474 | 256 | 3.8E-88 | ||
| Coils | 559 | 586 | 28 | - | – | |
| MobiDBLite | 621 | 641 | 21 | - | – | |
| MobiDBLite | 627 | 641 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0111600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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