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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0111800 |
| Transcript ID | LotjaGi4g1v0111800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cold acclimation protein; TAIR: AT3G50830.1 cold-regulated 413-plasma membrane 2; Swiss-Prot: sp|Q9SVL6|CRPM2_ARATH Cold-regulated 413 plasma membrane protein 2; TrEMBL-Plants: tr|I1MNK1|I1MNK1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0111800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16020799..16024936) extracted from Lotus japonicus Gifu genome v1.2.
AAAATGGCATTTTGATGTATGGGTGTAGTACCACCCCACCAGACCAATAAACATGGGGAGCTCACAAAATCAGTCAAAGC CCAAGAAAATAGGTGGAAATTGGCAAGAGATCCAAAAATTCGCACCAGTTTACACCCATGACCATTGCTTGAAACTTTTA ATCAGAGCCTCTCACATGGTTCTTCTAACTTTCTAGTTCTATAAATGACAACCTCAACACTAGTCACATCGATTCTCTAG AACTAGAGCCTTCTTTGTTTTCAAATTTTCATCTCTACGTCTAATCCCATTTGACAGTGTTTGTGAATTGTGAGCACGAT GGGTAGAATACTAATGCAGTATCTGGCTACCAAAACGGACCCCGTTATCGCTAGTTTAATCGATTCTGATTTGGATGAGC TCAAGCTTGCAGCACAGAAGCTCTTCCATGATGCAAGTATGCTAGGAGGCAGAGGGTTTGGCACTTCTTTCCTTAAATGG ATGGCTTCCTTTGCTGCCATGTAAGGTCAATTTTTTGCATGATTAGTTGATAACCAATACATATTTGCTTGTTTAGGAAG GAAGAATCAGTTATGAATCAATGGGCCCGTTTGAAGAGTGATTTGTTGGTTTAGAGAATTTCACAAAACCAAAGGGTTCT CGGTTCAAGACCCGCACAAAACCGAAAAAAGCTATGAATCAATGGGGTTGGTTTTTTGTTGTTGTCTGTATTGTTTCGGT AATGACAAAAATTAAAAAAATTAAATCCCTAAAAAAGTTGTGTTAAATTTCAACGAAAAAAGAAGATACAGCTTACAGGT AGCAGCATTGATACGTGAACCGCTAAAATACGTTAGGATACACATTTTATTATATGGGTGTCCGTAGTTATTTACATTGT AGTATGGTTCATGGATATTTTTGTATAGGTTGGCCTAGGAGAGTTTTTGAGCTTTAGAGGATGTAGTATAGTCCAAAACT TTAGGCTTAAATGCATTTGGTGCCCCTGATGTATTTCAAAAGTGCAAATGATAACCCTACTCTTTTTTTGTAAACGTTTG TACCCCCTTTGTTTTGAGAAAGTACACCGAATGCCCCTCCGTCAGGTTGACGTTAAAATCCTAACGGAGGAGCTGACGTG GATATTATTTTTACTTTTTCCTTTATTTTCTCTAATGCCACGTGGATTTTATCAACTAAAAACAAAAAAAAAGAAAAATG ACAAAGGCTTCAAGAAATTGGTCTTCTTTCTCAGAACAAAGCTCGCCAGAGAAACGCCGGTGGCGGTGGTGGCGGTCGCC GGAGTGACGGTGGCCGATCGTCAAATTGATTGAGGGGTTTTGAAGCGGATGATGAGGGGAGTTTAGCCATGGTGTTGGTT TCTCCAAAAGGAGAGCGGTTCGCCGGAGATTGGAGGTTGAAGGTGGCGGCTAGGGTTTGGTTTCTCCTCTATTTCTCTGT TGTTTCTCATCATGTTGGTGATGATGGTGCTCGCGGTGGTGCTGGACGTTGGTGGTGTGCTCGTATCTGAACCAGAGGTA AGGAAAAGAGGAAGATGATGGCTTGATGGTGTTGGTTCGTGAGGGAGAAGGTGGTGGTGCTCTGGCTCGCGTGAGGAGGG CGCGGTGGTGGCGGCTGGCACGCGGTGGTGCTGGACGTTGGTGGTGTGCTCGTATCTGAACCAGAGGTAAGGAAAAGAGG AAGATGATGGCTTGATGGTGCTGGTTCGTGAGGGAGAAGGTGGTGGTGCTCTGGCTCGCGTGAGGAGGGCGCGGTGGTGG CGGCTGGCACGCGGTGGTTGCTGGCGTGAGAGGAAGGAGGGAAACATGGTGAGGGTGATGATTCTTGCTGCTGTATCAGA AGAAGAGGAAAATGGGTTTGGAGAAGAAGAGAGAAAGAGAGATGTCGAGTGAGTGAGAAGAGAGAGAGCGTGAATGAGGG TAATATCCACGTCAGCTCCTCCGTTAGGATTTTAACGTCAACCTGACAGAGGGGCATTCGGTGTACTTTCTCAAAACAAT GGGGGCACAAACGTTTACAAAAAAAGAGTAGGGTTATCATTTGCACTTTTGAAATACATCAGGGGCACCAAATGCATTTA AGCCAAAACTTTAAGGGCAATTGGACTATAACATTCCCATATAAACCATTGTTAGTACATTGACAAGTTACTTTGTGACC AGCTTAATGAGGAAAATTTTATTTAAATTGACTTTACAAGAAAATGTTCATCATTTCAGATATCTACTGATACTGGATCG CACAAATTGGAGGACAAATATGCTGACTTCATTGTTAGTGCCTTACATATTCTTCAGTTTTCCCGGGTCTCTGTTCCACT TTCTCAGGTAATAACAGCAACATTTGGAAGATTCTTCTTCCCTTCTCTTTTGCTTTCCCAATCCCATTTCCTCTCTTCTT TACAATTACTAGCTTCATGTTGAAGTTGACTAAAAATTCCATTTCTATTATTCAGAGGAGAAGTTGGAAAATGGATCGCT TTCATTGCAGTGGTGCTGAGGCTTTTCTTTCATAGAAATTTTCCCGGTATGTTACTATACTTCTAGTACTAAAACAACAT ATTGGTGAATTTTACCAAAAGATTCTTCAGTTTGCACATTTCATATGTGTTAATGTTAATTTGATACAATGTCATGGTCG ATCAATCATCCTATACATTTACTCGGTTGGACAAAGACACATGAACAATTTCACATCATATTTCTAACATATTATCGCAC ACAAGCCTAACATCAATATGTTGGTAAGAGATCATGCAAGTTTTGTTAAACCACCAATTGTGTGTGTGACTTCTCTCAAC AATGCTTGAAAGCACTTTCAACGAAAACTTATGTGTTCCTGAAATATAGCTCAAGTGATAAGAGTCTAGGACATATGGGT TAGGGAGGGAACGGTCCAAAGATCAATTCCTGAAGGGAAAATTTGGCCGATAAAAATATAAAAATTTATGTGTGACAATA GATTAGAATGAAACTACTATTGCGTGAATGTAATGGGAATTCAAAAGCAATGCTTATACCATATTATGGGCCAAATATCT CATTAACTAAAAAAATTGGGTTATTTGTTTAGGGCAAGTCTCTATGGTGGATTATGTTAAAAATCGGTCTACTCATGAAC TATTAGTAAATGGATCCTCGCTAGCCAGCCTAGCTATCCTGCAAAATGTTGTATGTGGATTGTTATATTGAATAATTGAG ATTGATCAATTTGAAATTGAACTATAAAAACTTATGTGACTACACGGCTGGAGAGAATCAAAATTCATGTTTTACTATTA ACTATCAAGTTATTTACTATATGCTCTCTATGGGCTAAGATTAATTTACATAAAAGTTTTTTATAACTTGGGAACCAGAT TTTTCTTGTTGCATGTCATATTTTTTATTTACACTTTTGGAATTCTATATTTGGAGACATGGGCACCCCTTTGTGTTAAA CTTAACTAATTGTAAAATTGGCTGGAAATCCTTTCAGATTTGCTGGAAATACCTGGATCAATGATCCTTCTTTTAACAGT GGCCCCAGACTTGTTTGCTCAGAGGTTCAGGAACAACTGGGTTGGAGTAGCAATTGATCTTTTCATTGGTTGTTACCTTC TACAAGAACATATCAGAGCTACAGGGGGATTCAGAAATTCCTTCACCCAGAAACATGGAATTTCAAATACTCTTGGCATC CTCCTCCTCATAGTCTATCCAGTATGGTCATTGGTTATCCATTAATTAAGTATATGAAGCATTATAGGATATATAATAGT CAGTGATGATGTTAGGAAAATAAATTTATACATGGTGGAGTCTGGTATATGCAGAGAATGGTGCATGCATGAGAACTCCA GTGATTTAATTTTAGATGACAATTTTTGCTGTGTACGACAATATATTTAGATAATTTAAAATTATACTGATTTTTTTAGA CAGTGTGTTTGCCCCAACCAATGCGGAGTTTAGTGTAAATTGTCCTCAAAATATACTAGCAAACGTAATTTGACTTATCT TTTGTGCTCTCATGCGGAATTTCTACTCATTACCAGTTTTGGATGTTAAAAAGGTTTGGTTTGAATCCTCCAATTCTGTG AAGCAAACAATGGACCGATAGTACACTCTCTTAATAATGAAAGAGAGGGGAATGTGGG
CDS sequence (LotjaGi4g1v0111800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGAATACTAATGCAGTATCTGGCTACCAAAACGGACCCCGTTATCGCTAGTTTAATCGATTCTGATTTGGATGA GCTCAAGCTTGCAGCACAGAAGCTCTTCCATGATGCAAGTATGCTAGGAGGCAGAGGGTTTGGCACTTCTTTCCTTAAAT GGATGGCTTCCTTTGCTGCCATATATCTACTGATACTGGATCGCACAAATTGGAGGACAAATATGCTGACTTCATTGTTA GTGCCTTACATATTCTTCAGTTTTCCCGGGTCTCTGTTCCACTTTCTCAGAGGAGAAGTTGGAAAATGGATCGCTTTCAT TGCAGTGGTGCTGAGGCTTTTCTTTCATAGAAATTTTCCCGATTTGCTGGAAATACCTGGATCAATGATCCTTCTTTTAA CAGTGGCCCCAGACTTGTTTGCTCAGAGGTTCAGGAACAACTGGGTTGGAGTAGCAATTGATCTTTTCATTGGTTGTTAC CTTCTACAAGAACATATCAGAGCTACAGGGGGATTCAGAAATTCCTTCACCCAGAAACATGGAATTTCAAATACTCTTGG CATCCTCCTCCTCATAGTCTATCCAGTATGGTCATTGGTTATCCATTAA
Protein sequence (LotjaGi4g1v0111800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRILMQYLATKTDPVIASLIDSDLDELKLAAQKLFHDASMLGGRGFGTSFLKWMASFAAIYLLILDRTNWRTNMLTSLL VPYIFFSFPGSLFHFLRGEVGKWIAFIAVVLRLFFHRNFPDLLEIPGSMILLLTVAPDLFAQRFRNNWVGVAIDLFIGCY LLQEHIRATGGFRNSFTQKHGISNTLGILLLIVYPVWSLVIH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 45 | 45 | - | – | |
| PANTHER | 5 | 202 | 198 | 3.3E-103 | ||
| PANTHER | 5 | 202 | 198 | 3.3E-103 | – | |
| Pfam | 12 | 191 | 180 | 4.0E-84 | ||
| TMHMM | 44 | 66 | 23 | - | – | |
| Phobius | 46 | 64 | 19 | - | – | |
| Phobius | 65 | 75 | 11 | - | – | |
| Phobius | 76 | 94 | 19 | - | – | |
| TMHMM | 79 | 96 | 18 | - | – | |
| Phobius | 95 | 99 | 5 | - | – | |
| Phobius | 100 | 115 | 16 | - | – | |
| Phobius | 116 | 121 | 6 | - | – | |
| TMHMM | 122 | 141 | 20 | - | – | |
| Phobius | 122 | 140 | 19 | - | – | |
| Phobius | 141 | 145 | 5 | - | – | |
| Phobius | 146 | 162 | 17 | - | – | |
| TMHMM | 148 | 167 | 20 | - | – | |
| Phobius | 163 | 181 | 19 | - | – | |
| TMHMM | 182 | 201 | 20 | - | – | |
| Phobius | 182 | 201 | 20 | - | – | |
| Phobius | 202 | 202 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0111800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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