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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0113900 |
| Transcript ID | LotjaGi4g1v0113900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | BTB/POZ domain-containing protein; TAIR: AT3G50780.1 BTB/POZ domain protein; Swiss-Prot: sp|Q9SVM0|Y3078_ARATH BTB/POZ domain-containing protein At3g50780; TrEMBL-Plants: tr|A0A072TUF3|A0A072TUF3_MEDTR BTB/POZ domain plant protein; Found in the gene: LotjaGi4g1v0113900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16428000..16430996) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCGGAAATTAGGCTTCCCAGGGTTGAGAAAGGCCAAAATAAGATTAGAAATGTTCCTATAGCTGTCACCCCAGAAGG GTTTTGGTGTTGCCCTTCTCCTGTTGTGTTTCAGAAGAGCCTTAATAAGGCTCAAAATCATCCTCTGAATAAATCTAAAC CCTCTTCGCCGCCGCAGAAAACTAGTGTTCCGAAAAGGCCAGTGCAAGTGAGTGAGAGAAGAGCTTCTGCACCTTCCCCA TCAAGATTACTGCTTTCTGATGATCATGCTGTTTCAGAAAGGCCTCCTCCAGCTAGCACATCTGAATCTGTAGAGAGACC TTCGAGGCCGAAAGTTGAATCTATGCCGAGGAAGGTGGCTATTGAGTTTGGTGAGCCTGGAACTTGTGATTTGAAGGTGG TTTTGTTAGGCAAGCAGGGGTTTTGTGTCAAGTTAAGTGTCCACAAGGATGTGCTCAAAGAGAAGAGTAGTTTCTTTTCT GATAAGCTTTCGGAACAGTCGGAGTTGGAGTTGTCGTGTCTCCAAATTGGTGATTGTGAGGATGTGGAGATATATGTTGA AGCTGTTGGTCTGATGTACTGCAAGGAAATGAAGCAGCGGCTTATGAAGCAAAATGTTTCTCGCATTCTTCGGATACTCA AGGTAATTTACTGTCTGTGTCATGCTTTGCTGTTTTTTGATCTACCTTGATTCAATTTTGTTCTGTAATGCATTTGTGTG GATGAATATGTGGTGTCCTTATTAATCTTTAGTAATTGTAGATGTTGTAATTTTGAGATTATCTCATTGCGTCTCTGTGT CTGTTTTTTTGTTCTTCTAAAATACAATGTTTGTTTGGAAGCTTGTTCATATCTCTGCTTAAGAGAATTAGTACTCCTAT TATTAAGTATGCTCCTTGTGTTGAGTTAATTCAGCCTTCACTTCGATAAATGCCACTGCTAACTGCATATTTATCTGTTA TGAAACAGATATAATTATGAATTTAAAAAATGTAAATTATTTTGCAGTATTTTGTGATTGTAAACGGGTATAGAAACATC ACCATCATTAATTGGAAGCTGCTAAAATAAAATGAAAACTGGTGCATTTCAATTGTTTCATGAATAAATTGCTCTGATAA AGGCTATTTATAGATGCACCTTTTTGGGAGGCCTTGATTGTTTTATTTACATGATCTCTCCTCAACTCTGGTCTTAAAGA ATGAAGTGCTTGTATCACAAGTAATTTCATGGATTGTGCCTTTTGTGACAGATAGTCAGATACCCATATACTGATATACT GACTACTGAAGGCAAAATTGGGAGTTGCACAAGAAGAAAACTTGTGCTATAGATGTCAATTGTAGTGAAGAAAATAAATA ATCCTTGTCGACTCGAATGGGGATTTGAATTTTTTTTTTTCTTTCTATGGTTAATGAAGAAAAAACTTAGGTGCTCTTCA AAAGTATATGCATAAATAGGTTGCAATACATACTTGCATGCAAATATATTGACACAGAAAGATCAGCAGTTGCATTGAAA AGTGCAGTGTTCCATGAAGGAAAATATACTAAGGGCATGATACAAGTAACCATGGTGTCATGGGGTTGGTATTTTCCCCA AAACAATTAGTAGTTTACTGAGGTGGTATATGAAGTATGAACTGCTACAAGTAGATGCATTCATGGGTTTTCAACTTTAT GGATGTGGTGTAACTGAGGTAAGTTTTAGTGTTCAAATTAACTGAAGCCCTACTTCAGTCTTTCTACATTTTGCAAATCG GTTCTGTTTGTATTTCCATGAAATGCCAAAAATTACTATGTAAATTTTGTTTAGCTGTAGGACTCCTTGATCGATTTGTA TACCGTATAGCATATAATATCCTGCTTTATACTAGGATTTGTGAAAGAACATGAAGTTATTTGAGAGAAGTTTTTATGAT CAGTCTGTATATATATGATTTAGTGTTTCATAGATTACTAGGTAATTTGGCAAAATTAGAAACATTGAAATGTTATTTTG AAAGCCTAAACTATAGTTTTTCCTTTAGGTTGCAGAATTCCTTGGCTTCAGCTCATGCATCCAATCATGTTTGGAGTACT TGGAGGCAGTTCCTTGGGTTGGAGAAGAAGAAGAAGAAAAGGTGGTCTCAACTGTACTCCAACTTCAAGGGGAAGGAATC GGGGTCAACCCTGTGCTGAAACGAGTTTCTTCTGATATTTCCAATGTCCAAAAAGACACTCTTTCCCACATTATTGAACT TGTTCTTAAAAGCAACGATGAAAGAGGTCGCCGAGAGATGAAATCCATAGTTCTAAAGCTCCTTAAGGAGAACAACAGTC TTCCAAGTTACACGCGTTCAGCGGACACCTGCAATGACATGATTTATACATCATGCAGAAGCTGCTTGGATTCATTATTG TCTTTGTTCAAGCAGGCTACAGAACCGCCCTCCCCTGACAAACCAAGTGCTGAAAAAGATGCCCTGGTAAAGCACATAAC TCTTCAAGCTGACAACCTGTCATGGTTGCTTGAGATTTTACTTGACATGCGAGCAGCCGACGAGTTTGCACTGATGTGGG CAAACCAGCAGGAATTGGCCGCCCTACATGCAAAACTGCCCATCGTATCGCGCTATCACGTGAGCTGCATTTCTGGAAGA CTATATGTCGGCATTGGAAAAGGTGAGTTGTTGCCGTCAAAGGACACACGGCAATTGTTGTTACAGACATGGCTGCAGCC TCTGATGAATGACTACAACTGGTTGCAGCATGGATGCAGGTCATTTGATAGGAAACTTGTGGAGGAAGGAATTGGGAGGA CAATTCTCACCTTGCCTTTGGAGGATCAGCAAAGCATCTTGCTTTCATGGATGGGGAGTTTCTTGAAAACTGGTGATAGC TGTCCCAATCTCAAGAGAGCTTTTGAGGTGTGGTGGCGGAGAACTTTCATTAGACCATATGTGGAAAATCAAGGGAATGC CATGCCAGAAATGTTGCTGTCAAAGGAGCATGAATAA
CDS sequence (LotjaGi4g1v0113900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAATTAGGCTTCCCAGGGTTGAGAAAGGCCAAAATAAGATTAGAAATGTTCCTATAGCTGTCACCCCAGAAGG GTTTTGGTGTTGCCCTTCTCCTGTTGTGTTTCAGAAGAGCCTTAATAAGGCTCAAAATCATCCTCTGAATAAATCTAAAC CCTCTTCGCCGCCGCAGAAAACTAGTGTTCCGAAAAGGCCAGTGCAAGTGAGTGAGAGAAGAGCTTCTGCACCTTCCCCA TCAAGATTACTGCTTTCTGATGATCATGCTGTTTCAGAAAGGCCTCCTCCAGCTAGCACATCTGAATCTGTAGAGAGACC TTCGAGGCCGAAAGTTGAATCTATGCCGAGGAAGGTGGCTATTGAGTTTGGTGAGCCTGGAACTTGTGATTTGAAGGTGG TTTTGTTAGGCAAGCAGGGGTTTTGTGTCAAGTTAAGTGTCCACAAGGATGTGCTCAAAGAGAAGAGTAGTTTCTTTTCT GATAAGCTTTCGGAACAGTCGGAGTTGGAGTTGTCGTGTCTCCAAATTGGTGATTGTGAGGATGTGGAGATATATGTTGA AGCTGTTGGTCTGATGTACTGCAAGGAAATGAAGCAGCGGCTTATGAAGCAAAATGTTTCTCGCATTCTTCGGATACTCA AGGTTGCAGAATTCCTTGGCTTCAGCTCATGCATCCAATCATGTTTGGAGTACTTGGAGGCAGTTCCTTGGGTTGGAGAA GAAGAAGAAGAAAAGGTGGTCTCAACTGTACTCCAACTTCAAGGGGAAGGAATCGGGGTCAACCCTGTGCTGAAACGAGT TTCTTCTGATATTTCCAATGTCCAAAAAGACACTCTTTCCCACATTATTGAACTTGTTCTTAAAAGCAACGATGAAAGAG GTCGCCGAGAGATGAAATCCATAGTTCTAAAGCTCCTTAAGGAGAACAACAGTCTTCCAAGTTACACGCGTTCAGCGGAC ACCTGCAATGACATGATTTATACATCATGCAGAAGCTGCTTGGATTCATTATTGTCTTTGTTCAAGCAGGCTACAGAACC GCCCTCCCCTGACAAACCAAGTGCTGAAAAAGATGCCCTGGTAAAGCACATAACTCTTCAAGCTGACAACCTGTCATGGT TGCTTGAGATTTTACTTGACATGCGAGCAGCCGACGAGTTTGCACTGATGTGGGCAAACCAGCAGGAATTGGCCGCCCTA CATGCAAAACTGCCCATCGTATCGCGCTATCACGTGAGCTGCATTTCTGGAAGACTATATGTCGGCATTGGAAAAGGTGA GTTGTTGCCGTCAAAGGACACACGGCAATTGTTGTTACAGACATGGCTGCAGCCTCTGATGAATGACTACAACTGGTTGC AGCATGGATGCAGGTCATTTGATAGGAAACTTGTGGAGGAAGGAATTGGGAGGACAATTCTCACCTTGCCTTTGGAGGAT CAGCAAAGCATCTTGCTTTCATGGATGGGGAGTTTCTTGAAAACTGGTGATAGCTGTCCCAATCTCAAGAGAGCTTTTGA GGTGTGGTGGCGGAGAACTTTCATTAGACCATATGTGGAAAATCAAGGGAATGCCATGCCAGAAATGTTGCTGTCAAAGG AGCATGAATAA
Protein sequence (LotjaGi4g1v0113900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEIRLPRVEKGQNKIRNVPIAVTPEGFWCCPSPVVFQKSLNKAQNHPLNKSKPSSPPQKTSVPKRPVQVSERRASAPSP SRLLLSDDHAVSERPPPASTSESVERPSRPKVESMPRKVAIEFGEPGTCDLKVVLLGKQGFCVKLSVHKDVLKEKSSFFS DKLSEQSELELSCLQIGDCEDVEIYVEAVGLMYCKEMKQRLMKQNVSRILRILKVAEFLGFSSCIQSCLEYLEAVPWVGE EEEEKVVSTVLQLQGEGIGVNPVLKRVSSDISNVQKDTLSHIIELVLKSNDERGRREMKSIVLKLLKENNSLPSYTRSAD TCNDMIYTSCRSCLDSLLSLFKQATEPPSPDKPSAEKDALVKHITLQADNLSWLLEILLDMRAADEFALMWANQQELAAL HAKLPIVSRYHVSCISGRLYVGIGKGELLPSKDTRQLLLQTWLQPLMNDYNWLQHGCRSFDRKLVEEGIGRTILTLPLED QQSILLSWMGSFLKTGDSCPNLKRAFEVWWRRTFIRPYVENQGNAMPEMLLSKEHE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 525 | 525 | 9.8E-258 | – | |
| PANTHER | 1 | 525 | 525 | 9.8E-258 | ||
| MobiDBLite | 45 | 66 | 22 | - | – | |
| MobiDBLite | 45 | 114 | 70 | - | – | |
| Gene3D | 123 | 234 | 112 | 2.7E-5 | – | |
| SUPERFAMILY | 128 | 232 | 105 | 3.92E-5 | ||
| CDD | 129 | 232 | 104 | 4.09322E-4 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0113900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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