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LotjaGi4g1v0114200.1

Overview

Field Value
Gene ID LotjaGi4g1v0114200
Transcript ID LotjaGi4g1v0114200.1
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description V-type proton ATPase subunit H; TAIR: AT3G42050.1 vacuolar ATP synthase subunit H family protein; Swiss-Prot: sp|Q9LX65|VATH_ARATH V-type proton ATPase subunit H; TrEMBL-Plants: tr|B7FJS8|B7FJS8_MEDTR Uncharacterized protein; Found in the gene: LotjaGi4g1v0114200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:16513403..16520117) extracted from Lotus japonicus Gifu genome v1.2.

AAAATTCGTAAAAGAAAACTACAACGTTTTAAAATAAAATGAAAATTTATTTTGTAAAACTAAATTCAAATTAATTGCCT AATAATCATTGAAGATATACGTCCCTTTCTTGCATAGAAATCTGTAAAATAGAATAAAAATAAAGAAAAATAGATAGGCA CCCACGTGTCATATGGATGAACATGATTGTAAAATGGTCGTACGAGACACACTGATTTCATCTGCTTCCAAAACTGATCT ATACCCAGTTTCCTATCACTTCTCTCTTTTTCTCTGCGCCAGAAATTCAAAACCCACCAAATCGCGAGCGAGCAAGGTAA AACAAACAAACCTCTCTTTCATCCTCCTCTCAATTCTCAATTCCTTTCGTTCATTTCAATTTTGCTTCATCGTCTGCTAC TGTTAATTTCACTTGATTACGCTTCTTCTTCTTCAATCTTCATCATTGCAGTGTTCAAGCGAACTTCCCAAGTTCTAGGG TTCCCCAACCACCATGGACCAGGCCGAATTAACCGTCGATCAGGTTCTTCCCGATCCGTTCCCTCCCTCATTCTTCGATC TGATTCTCAAATCGCCGCTCGATTCCGTTTCAGATTTTCACTTCTTCTCGATTGCAATGTCGAATTTTACTGATTATCTC TATTCACATTGTGTTCTTGTGTTTTCTCCTTAGGTTCTCAGTAGGGATATCCCATGGGAGACTTACATGTCCACCAAGCT CATCTCAGGAACTAGCCTTCAGCTCTTACGGCGTTACGATCACCGATCAGAAAGCCACAGAGCACAGTTGCTTGATGATG TAAATTTTTATTATCAATCAATTTGCCAAACAAATCGAATTAATTATTGCTGTCCTTTTCGCGATTTTTAAGTGAGATTA ATTTCTATGCACTGACAACAGTGTAAATAATTGCAAATTTCATTTGAATTTTGAAGTAGGTTTGATTTCTGATTCTTCTG TTTGCTGTTTAGTGGTGTTGAGAATTCAACTTTGTTGTGTGGCAGGATGGTCCTGCTTATGTTCGCGTCTTTATTCATGT TTTGCGCGATATTTTCAAAGAAGATACAGTGGAGTATGTTTTGGCACTGATAGATGAAATGCTTACTGGTAATTGTTGGA ATTGGCCATGTTTTTCTTACTTTGTCTGTTGTCAGTAGTGGCATAGCCTTTAAATTGTCATCCTTCTTCGCAGCAAACCC GAAGAGAGCAAGACTTTTTCATGACAGCGCTCTTGCAGATGAAGATACTTATGAGCCTTTCCTAAGTTAAGTACTTACAG AGATGTGTTTTTGTTCTGCATATTGGTTATGGATTTTCTCCGTTTTGGAGTTGATGGAAGCTGAAACACATTGTATTAGT TATCTATTATGCTTCATGATGTTATTTTTTTCCGATTTAATTTCTTATTATTTTAAATTTTTACCATTTGTTTTGAATAG AATATAGTTGTTGTGATGGCTATCACTACAGCCAAACTTTTACAAAAGATTTCTTTTGCCGCGGGTTGACATCTTGGTTC AACCATTGATGACCATATATCTGCTTTGGATGGAACATACCTTTCTCTTTACTTGGAACAGAGACTGAGAGTCTCATAAT TGTTTCTTCCACATTTGTATTTTTATTTTCAGTTTATTTTTACCACTTAGATGAGAAAAAGCTGTATATTCTTGTCATCT AGATGATGTATCTGATTTTTTTTTTTACTTTGACTATTTTATTTGGATGTTTAAGATCCTTGATTATGGAAATACAAAAA GTAAAAACTAACAATATTGTCGGTCTTTCAGATTGCTTCGGAAAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATC CTTGCCTTAATAGCTAGGTAATACAAAAATGAGGTGTTCTCACATTCTAATTCAAAAACATCTGACTTAAATGAATTAGC GTCGTGTTGTATAAGTTACTTTTCAGTTATTGCGAAATTTCACCCTTTTCTGATTATAGTGCCAGGCCAAAAAATCAGAA AGAGATTGCTTCGAATAGAGAAGCATCAAACGAAAAGAAACCATTTACCTCTATTGATGATGTTTTAATAGGATTGGTGA AATGGCTTTGTGAGCAGGTATTTGATACTGAAACTGTTCCCTTTTTCTCATCCATAAACTTTTCATTAGCTGATAGTCTT GGGTTTGTGAACGGTGTTATCAATTTGAGATATATAAGGTCATTGCTAGATAAAGATGTTTACTTCTGAAAGAGAAAGCT AAACATTTTGAGCTTACTATTTAAATATATGCTAGCATTTTATATCATTATATGAAGATCAATTGTACATTGGAAGAGTC ATTTGTGATGTGTGTTTGTGTATAGAAAAATGTCCAAATTTACACTTATGTGACATGATGATGGCTTTTTCTCTTTCTAA ATTTAAGAAGTGTATGAATAGATGTTAAGAACTGTAATTACATTAGATGGGTGAAAGAGATGGGCCTCCAGTTAATTTTA AATTACAGTTTTTAGTTTTCCTTTGGTTTCAAGTACTAAAATAAACCAAACTCTGGGTTTTCTTTTCTTTTTTCTTTTTT TTGGGGGGGGGGGGGGGGGGTTTAAGATGCCAAATGAGAGAATTTTCTGAAGTTGCCTAACGGACATGAGAAGCTGTTAG CCCTTACTCCAATCCTGTACAGATTTGAGCAAGATAAGCTTTAGCATGCTCTATAGAAGCATAGTATCGCTCTCAGTAGA TGAAACCAGGGTCGTTAATGGCAGATAGCGTAGTGTAGCGGCAAGCCCAAAAAACGCTATTTCGAGCGCTATTGCGGCGC TATAGCAGCAAATAGCGGTGAATAGTGGAGTAGCGGTGAACCCCCAGGGCGCTACGCTATAGGCTATTGCGCCGCTATAG CGCGCTATTAACAAGCCTGGATGAAACACTTACAAAAGTTCACGAACATGTCACGTTTTCTGAAGTTGAAAACTTAGGCT ATACATTGGACTACAGGAGCACTTAAACCAGATGTGCTCATTCATAGACTCAAATCAACAAGAAGTTTACAAGATGTTTC ACATGAAAATAAAAAATGCATGTTAAAATTCAAAGATTTTATGAGGCGCAATTCTATGATGACACGTATAACAAAATCGC ATGCTTGTCTGAGTAAGTGATTATTTTATCTGTAGCTGAAGAAACCTTCTCATCCCACCCGTGGAGTGCCAACTGCTATC AATTGCCTAGCAACACTACTTAAGGAACCTATCGTTAGGTCTTCCTTCGTCCAAGCAGATGGGGTCAAGTTGCTTGTTCC ATTGATTTCTCCAGCATCCACTCAACAGTCTATTCAGGTAAGTTTGCCAGATTCCCTAGCTCTGAGAATATGAAGTTCTG AATAAGTAGATTGTTCTTCAGTTGACCCATATGAATTCTGCTAATAGATGCTAGGGTAAGCTGTAAGAATGATGTATCTA GTTATCTTATGACTGTAATTCTTTCTGGAAATCAGAAGCCTTCACTGGATCTATTAATAGATGACTAAACTAAACTAAAC AATAACATGCTAAGTTCATCTGGTCAAATACTTACTTCTTTTTTATGAAGAAGAATGGCAGCTTGGTACCTGGGGATTCC AGATTTGTTGGCTTCTAAATTTACTTATCAACAAAATTATTACTTATACAGTTCACAGCATCATTGCACTTACGTGGGAA ATAAAGGGAAATTAATTGAGAATTTCCTTTGTAACAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTGTCCTATT TCGAGCCGGCAATTGAATATCTGGCTACTTCAAGGACCCTTCCGAGACTTATTGATGTTGTTAAGAGCACTACAAAAGAG AAGGTATAGCTGATTTATTGAGTTTATATTTGTCTCATTTTATCTTTTAAACAAATGTCGTTCACACGATTCTTTTTCTT AACTGGTAATATTATATTATTAGTTAATAGTTATATGATAGCTGGTAGCAGCATTTGTATTATCTTTTTGTTTTATGCTC ATCCATGCCGTTGGTAGCAACTAGCAAGTTGAGGTTTAAAAATTTTTCTGGCATAAAAGTCTAATGTTAGCACAATTGTT TTGCCTATTTTGGTAGGTTGTTAGAGTTGTTGTCTTGACTCTTAGAAACTTGCTTTCAAAAGGGACGTTGGGTGCTCAGA TGGTGGACCTTCAGCTTCCACAAGTTGTTCAGAGTTTAAAAGCACAAGCTTGGAGTGATGAGGTGAGAGAATAAAAGACC TACATAAACTTAACTCCTGAAACTTTGCTTGTGCAAATTGAATTAAAATATAATAGGTTGCAGAGTTTAACCACTGGAGG TGATTTTTTTATGTATTTTTTAGCATTGTTGAGGTACTTGCAGTCATAACTTTTTTTCCCTTTTTTAGTATTGTGAGTGC AATCGTGACATCTGATGTAGTTAGGACTTAGGATATTTGCAATGATATTTATCATTTACTGGATTTCTGTCATACTGTGC ATGTGGTACTGATTTGTTAAATACAATTGTCTTTTTACATGTCACATCACGTTATGCATTTCAATAGAAAAGGAAAAATC TGATGGACTTCTCATAACTCATTGTAATGATAGGATCCTCTCACCCAATAATTTATTGCCAGTCAAAACTCAAAAGTTTA CATATGACTTAACAATGTGGTAGATGAAATTGGATTGCTTAATAATGGTAAAGCTTTGACACATAGTATCCATCAACTCT CTTGCATTTCTTCCATGACAACAACAACTTATCCTTCTCTTGTTTCAATATGCATTTCCTGCTCAAGCATACATGAACAT TCATGCATTTACCAACTTGAATGCACATTGATGGAAGTTGACCAAATACCCTTTCTATCAGCTCTTCTGCATGAATTGGC GTTAGTTATGGTTGATCATTATATATTTCTACTTTGTTCTTGTAATATTGGTATTTTACATGTCTTGATGTTTCTCACTT TATGTTAAATTGCAAATGCAAAATAGTGGGATGTTATTTTAAACTTCAATTGTCACATTTTCTTTCGAAGATTCTATCTC TCGTTGCTTTCCCAACACTTCTATTGATTAAGCAAGTTTATCATAGGACTTGCTTGAGGCGCTGAATTCCCTGGAAGAAG GGCTTAAGGATAACATCAAGAAACTAAGTTCTTTTGATAAGTACAAGCAAGAAGTTCTTCTTGGCAATCTGGATTGGTCT CCCATGCACAAGGATCTCATATTTTGGCGAGAAAATGTCACCAATTTTGAAGAGAATGATTTCCAGGTAACTGCTTTATC TCTTCCTTTTTTAATTCGATGCAATTTTTATTTAAATACCCCTAATATTTTAGACTTCAAAAAAGAAAAACAAAAAACTA AAGGATTTCAGCTAGTGGAGCCTTGTTGTGATAGTATAAACAAGGATAGTGTCTTTCAAGGAAAAGATCGTGTAATTCGA TTTTGATTACGGTGATATGACTTTTCAAGTGATAGTTTTTAACATCATTAGGATGCAATGTAATGTCATGAAAATAAACA GTAAATGGACAAATTTATTCTTTATGGAGCCTTATATGTTCACAGCTTGCAGAATCTCCATTTTCTCATTGACTTAACCC TATTGGCGAAGAGATTAAATCTGTTTTATTGATTTATTTTGTAAATGTTTTGTGGGGATGAGTCTGAAGAGAAGGTATAA CAGGTCAAAGATGTCAGGTGGTCCAAAATATAAACAAAAATCTTTAAGGTACTTTTGGAGAACATCCGGAGACATGGAAA GGATCAATTGATTCTGTCTGGGGTCTTGTTGTTTCGATAATATGTTACAAGATTTGTTCTTCTACAAGAAATGAAGACAA CATTTGGTTTTTAGTGTCATCTAAAAGAAGCAAAATATGTTGCACTACATTGATTTTGATCAGAAACATTGTAAATGGAT TTTAAAATATTATGTTCCTGTGAGGGTAGAAACCTTCGTAGATGCTGTTCCTTCTTGCCATTTAGCAATGAAATAAGAAA CACAGAAAAAACACTAGTTCTAGTGCAATTCTTAATTCTTTATCTTCTCTCAAACATTCATATATTAGTTATTGATAGTA TCTTCATCTTTTGCAGATCGTAAGGGTCCTAATAACAATTTTGGACTCGTCCAATGATCCAAGGACTCTGGCTGTTGCAT GCTTTGACCTTTCACAGTTTGTCCAGTACCATCCATCTGGGCGGATTATTGTGGCCGACCTCAAAGCCAAGGAACGGGTG ATGAAACTTATGAATCATGAGAGTGCTGAGGTTACTAAGAATGCACTGCTCTGCATCCAACGGCTTTTCTTAGGGGCTAA GTATGCAAGCTTCTTGCAGGCTTAGATCTATTGCTCAATTGCCGGCAACGTTTCATCTGCCTCACAAATGGGATCGACTT TCCCGTGTACAAGGTTTATTCATTGTTTTAGCGAGTAATTTATTGTTTATGGCCATTAAGTGTCCAGTTCGAGCAGTAGA AGAAATTTGATGCCAGAAATAAGCATTCTCTGCTATTGAATAAATCAAGTTTTGTAACTTTATACTCAAAGTTGTGCTAC AAGCCTGTAGGTATGTTAAACTTTTTATAAATAAAATTTCTCGTTGATATGGATTTGTAATTTCTTGAAAAATGAGCTAC TTGCATATGAGCTCACGGCCATTATGCAGTGCACTTGTCTTAAAAAAGGCAATTATATAAAACATAAAAATAAAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0114200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACCAGGCCGAATTAACCGTCGATCAGGTTCTCAGTAGGGATATCCCATGGGAGACTTACATGTCCACCAAGCTCAT CTCAGGAACTAGCCTTCAGCTCTTACGGCGTTACGATCACCGATCAGAAAGCCACAGAGCACAGTTGCTTGATGATGATG GTCCTGCTTATGTTCGCGTCTTTATTCATGTTTTGCGCGATATTTTCAAAGAAGATACAGTGGAGTATGTTTTGGCACTG ATAGATGAAATGCTTACTGCAAACCCGAAGAGAGCAAGACTTTTTCATGACAGCGCTCTTGCAGATGAAGATACTTATGA GCCTTTCCTAAGATTGCTTCGGAAAGGAAATTGGTTCATACAAGAGAAAAGTTGTAAGATCCTTGCCTTAATAGCTAGTG CCAGGCCAAAAAATCAGAAAGAGATTGCTTCGAATAGAGAAGCATCAAACGAAAAGAAACCATTTACCTCTATTGATGAT GTTTTAATAGGATTGGTGAAATGGCTTTGTGAGCAGCTGAAGAAACCTTCTCATCCCACCCGTGGAGTGCCAACTGCTAT CAATTGCCTAGCAACACTACTTAAGGAACCTATCGTTAGGTCTTCCTTCGTCCAAGCAGATGGGGTCAAGTTGCTTGTTC CATTGATTTCTCCAGCATCCACTCAACAGTCTATTCAGCTTCTTTATGAAACATGTCTCTGCATATGGCTCTTGTCCTAT TTCGAGCCGGCAATTGAATATCTGGCTACTTCAAGGACCCTTCCGAGACTTATTGATGTTGTTAAGAGCACTACAAAAGA GAAGGTTGTTAGAGTTGTTGTCTTGACTCTTAGAAACTTGCTTTCAAAAGGGACGTTGGGTGCTCAGATGGTGGACCTTC AGCTTCCACAAGTTGTTCAGAGTTTAAAAGCACAAGCTTGGAGTGATGAGGACTTGCTTGAGGCGCTGAATTCCCTGGAA GAAGGGCTTAAGGATAACATCAAGAAACTAAGTTCTTTTGATAAGTACAAGCAAGAAGTTCTTCTTGGCAATCTGGATTG GTCTCCCATGCACAAGGATCTCATATTTTGGCGAGAAAATGTCACCAATTTTGAAGAGAATGATTTCCAGATCGTAAGGG TCCTAATAACAATTTTGGACTCGTCCAATGATCCAAGGACTCTGGCTGTTGCATGCTTTGACCTTTCACAGTTTGTCCAG TACCATCCATCTGGGCGGATTATTGTGGCCGACCTCAAAGCCAAGGAACGGGTGATGAAACTTATGAATCATGAGAGTGC TGAGGTTACTAAGAATGCACTGCTCTGCATCCAACGGCTTTTCTTAGGGGCTAAGTATGCAAGCTTCTTGCAGGCTTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0114200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDQAELTVDQVLSRDIPWETYMSTKLISGTSLQLLRRYDHRSESHRAQLLDDDGPAYVRVFIHVLRDIFKEDTVEYVLAL IDEMLTANPKRARLFHDSALADEDTYEPFLRLLRKGNWFIQEKSCKILALIASARPKNQKEIASNREASNEKKPFTSIDD VLIGLVKWLCEQLKKPSHPTRGVPTAINCLATLLKEPIVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSY FEPAIEYLATSRTLPRLIDVVKSTTKEKVVRVVVLTLRNLLSKGTLGAQMVDLQLPQVVQSLKAQAWSDEDLLEALNSLE EGLKDNIKKLSSFDKYKQEVLLGNLDWSPMHKDLIFWRENVTNFEENDFQIVRVLITILDSSNDPRTLAVACFDLSQFVQ YHPSGRIIVADLKAKERVMKLMNHESAEVTKNALLCIQRLFLGAKYASFLQA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10698:SF2
2 452 451 1.7E-263 –
PANTHER
PTHR10698
2 452 451 1.7E-263
IPR004908
PIRSF
PIRSF032184
2 451 450 3.6E-124
IPR004908
Gene3D
G3DSA:1.25.10.10
5 331 327 9.4E-36
IPR011989
Pfam
PF03224
7 323 317 2.9E-83
IPR004908
SUPERFAMILY
SSF48371
8 442 435 4.4E-122
IPR016024
SMART
SM00185
195 240 46 8.8
IPR000225
SMART
SM00185
241 282 42 1.2
IPR000225
Pfam
PF11698
329 441 113 1.2E-38
IPR011987
Gene3D
G3DSA:1.25.40.150
343 443 101 6.2E-31
IPR038497
SMART
SM00185
402 442 41 65.0
IPR000225

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000221
Cellular component Vacuolar proton-transporting V-type ATPase, V1 domain The V1 domain of a proton-transporting V-type ATPase found in the vacuolar membrane.
Subterm of
Part of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0046961
Molecular function Proton-transporting ATPase activity, rotational mechanism Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
Subterm of
GO:1902600
Biological process Proton transmembrane transport The directed movement of a proton across a membrane.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0114200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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