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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0115000 |
| Transcript ID | LotjaGi4g1v0115000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | UPF0496 protein; TAIR: AT2G18630.1 transmembrane protein, putative (DUF677); Swiss-Prot: sp|Q56XQ0|U496I_ARATH UPF0496 protein At2g18630; TrEMBL-Plants: tr|I3S560|I3S560_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0115000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16630720..16633178) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCCAAACACTAGTAGCGACGACAAGTCTTCTTTCCACTTTGAAAACCCCCACCCAACCACACTATGCTTCACCCCAT TTCCACTCACCTTCCTCCTTCACTTTTCTTGACCTCGTCCTCGTTCCTGGTTTGCTACTTCGCAAGCCAGTGAACGAACC CACTTTGACTCTTAATCACAGACACAGTAGTTAATTTCTCTAAGGTGCTGTTCTTGTGGGAAGGAATCACAGAGTCAATG ACACCAACTTGAACTTCAGCTGAAACCCAGGTAACAAAAACTTATTATATCCTGGAGTAACCTCATATACATGCTTAAAA ATTACAATTTTGATTTGGGTGTTCATGATTTTGAGTAATTAGTTCTGGATCTAGCCAAAGTCAATACAATCTTGTTAAAT TTTTAATCTTTACTATTTTGGGTCGCACTTGCTGAGGTTTAGGACTATTTCTGTTTGATTATTTGTGAATTGTGATTGAT TTGAGGGAGAAGAAGGAAATTCTAAGCGAACCCTTTTTCGTTTTGGATTTCTTTTTAGAATCTGCATTTGAGCTATCAAG ATGGGAGGGCAATCCAGCAAGATGAGTAGTGTTGATGCCCCCACATCCATCAACATGGGTACCCATTCCCTGTATGCAGC TGATTTGAGCTCCTATGAAGCTGCATGTGTGAAAGATCCAAGCTTGCAATCTTTTGATGCCACCATTCAGGGGCACACCA ACAGGGTGATTAGTTCCCTTGCTCATGGGGTTGAGGTTCGATCGTTGTCTTTTGACTCGCTGAGAGAAGTGACTGATAGT TTGCTTGAGATGAACCAGGAAGTAGTCAAAGTTATTTTGGATTGCAAGAAAGATATATGGGGCAACAAGGAGTTGTTCGC CTTGGTGAATGACTATTTTGATAATAGCCTCCAGACGTTGGAGTTCTGCAATTCTCTTGAGAAATGTTTGAGACGGGCTC GCGAAAACCAGGTCATAGTCAAGTCGGTGATTACCTACTTTGACGAAGAGCTGCAGAATGGGGTTGAAGTGGGGGCGTAT GTGAAGACATTGCAGGAGCTCAAGAATTTTAAGGATGCTGGGGACCCCTTTACAGAGGACTTTTACTCGTTGTTTCAGTC AACTTATACGCAGCAGGCATTGATGCTGCAGAAGCTGCAAATCAGAAAGAGAAAGCTTGATAAGAAATTTAAATCACTGA AGACTTGGAAGAGGGTCTCAAATGCCATTTTCGTGGCTGCTTTCGTTTCTGTGTTGATTTTCTCAGTGGTAGCAGCTTCT GTTGCTGCGCCACCAGTAGTAACAGCTTTAGCTGCTGCCATGGCTGTTCCAATAGGGTCAGTAGGAAAGTGGTGTAACTC ACTTTTTAAGCGATACAAGAAAGCTCTAATGAAACAACGGGAGGTAATCAGCTCAATGCAGGTTGGTACTTACATTTCAT TGAAGGACTTGGACAACATTCGGGTTCTTACCAACAAATTGGAATTACAGCTTGAGTCATTATTGCAGAATGCTGATTTT GCTCTTAGAAACGAGGATGTTATTAAGATTGCAATAGACGAGATTAAGAAGAACATAGAAACTTTTTCAGAGACCATGGA TACTTTAAGCGCACATGCTGATAAATGTAGTAGACAGATAAGGAGAGCAAGGACTGTGGTTATTCAAAACATAGTTAAAA AACCTGATTAAGGTCCGTTTGGAATGTCGTATTGATTAGTCTCCTATTAAGAAGTACTGATCGAACACCATGATTATTCG TTCAATAACATTCCTTATATATTGTAATGAACATTTATAAACTCGCTATGTATATAGATATTTGGATTATACATACGTGC GAATATGTTTGCTGCTCCCTGCTTAGTTGTGTCTGATTTATGTTACTCTATTGCTAGAACAAATTGAACATCAACTAGAG ATGGTGAATTGTTAAGGGCAGCTTAACTTAAGGTTGGGATAAATCTGAAATGAGCAGCTTCATGATTGAGAGACGGGTAA GTATCAATTTTTAAAAAGGTTGAGTATGAGATCCCAAGAAAATGAAAAACTTTCCCCATGAACTGAATTGTCAACATTTA GTAATCTAGTTTTGATTCTTTGATATATGCATTCTCAAGTTACGTTATACATGTAAAATACTCGTGCGTTTGTATAAAGG TGCAAAAACATGAAAGCACATTCACTCAATTTATCTCTTTGGTTCTGTTGGCTTTTTAGTCTTGTAATTTGTGTGAATGT ACATTGGAGACGATCACAACGTAAAAACAAACGGAGCAAATTGTTTCTATTTCGGTATTTGGATGTGAAGTGTATATTGC TGGTTCTTTGTATGACATTTTTTCATTTGTAAACGCTTGCACTCAGAGGTTCTTGAAGAGAATGAGAAGTTTAATGTTAT TGCTGGATATTTGGCAGACCTAGGCCCCGTTTGGATAAACAGCTTAATTAACCATAAGC
CDS sequence (LotjaGi4g1v0115000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGGCAATCCAGCAAGATGAGTAGTGTTGATGCCCCCACATCCATCAACATGGGTACCCATTCCCTGTATGCAGC TGATTTGAGCTCCTATGAAGCTGCATGTGTGAAAGATCCAAGCTTGCAATCTTTTGATGCCACCATTCAGGGGCACACCA ACAGGGTGATTAGTTCCCTTGCTCATGGGGTTGAGGTTCGATCGTTGTCTTTTGACTCGCTGAGAGAAGTGACTGATAGT TTGCTTGAGATGAACCAGGAAGTAGTCAAAGTTATTTTGGATTGCAAGAAAGATATATGGGGCAACAAGGAGTTGTTCGC CTTGGTGAATGACTATTTTGATAATAGCCTCCAGACGTTGGAGTTCTGCAATTCTCTTGAGAAATGTTTGAGACGGGCTC GCGAAAACCAGGTCATAGTCAAGTCGGTGATTACCTACTTTGACGAAGAGCTGCAGAATGGGGTTGAAGTGGGGGCGTAT GTGAAGACATTGCAGGAGCTCAAGAATTTTAAGGATGCTGGGGACCCCTTTACAGAGGACTTTTACTCGTTGTTTCAGTC AACTTATACGCAGCAGGCATTGATGCTGCAGAAGCTGCAAATCAGAAAGAGAAAGCTTGATAAGAAATTTAAATCACTGA AGACTTGGAAGAGGGTCTCAAATGCCATTTTCGTGGCTGCTTTCGTTTCTGTGTTGATTTTCTCAGTGGTAGCAGCTTCT GTTGCTGCGCCACCAGTAGTAACAGCTTTAGCTGCTGCCATGGCTGTTCCAATAGGGTCAGTAGGAAAGTGGTGTAACTC ACTTTTTAAGCGATACAAGAAAGCTCTAATGAAACAACGGGAGGTAATCAGCTCAATGCAGGTTGGTACTTACATTTCAT TGAAGGACTTGGACAACATTCGGGTTCTTACCAACAAATTGGAATTACAGCTTGAGTCATTATTGCAGAATGCTGATTTT GCTCTTAGAAACGAGGATGTTATTAAGATTGCAATAGACGAGATTAAGAAGAACATAGAAACTTTTTCAGAGACCATGGA TACTTTAAGCGCACATGCTGATAAATGTAGTAGACAGATAAGGAGAGCAAGGACTGTGGTTATTCAAAACATAGTTAAAA AACCTGATTAA
Protein sequence (LotjaGi4g1v0115000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGQSSKMSSVDAPTSINMGTHSLYAADLSSYEAACVKDPSLQSFDATIQGHTNRVISSLAHGVEVRSLSFDSLREVTDS LLEMNQEVVKVILDCKKDIWGNKELFALVNDYFDNSLQTLEFCNSLEKCLRRARENQVIVKSVITYFDEELQNGVEVGAY VKTLQELKNFKDAGDPFTEDFYSLFQSTYTQQALMLQKLQIRKRKLDKKFKSLKTWKRVSNAIFVAAFVSVLIFSVVAAS VAAPPVVTALAAAMAVPIGSVGKWCNSLFKRYKKALMKQREVISSMQVGTYISLKDLDNIRVLTNKLELQLESLLQNADF ALRNEDVIKIAIDEIKKNIETFSETMDTLSAHADKCSRQIRRARTVVIQNIVKKPD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 374 | 374 | 2.2E-195 | ||
| Phobius | 1 | 218 | 218 | - | – | |
| PANTHER | 1 | 374 | 374 | 2.2E-195 | – | |
| Pfam | 42 | 371 | 330 | 8.0E-119 | ||
| Phobius | 219 | 243 | 25 | - | – | |
| TMHMM | 219 | 241 | 23 | - | – | |
| Phobius | 244 | 248 | 5 | - | – | |
| TMHMM | 246 | 268 | 23 | - | – | |
| Phobius | 249 | 269 | 21 | - | – | |
| Phobius | 270 | 376 | 107 | - | – | |
| Coils | 297 | 324 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0115000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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