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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0115600 |
| Transcript ID | LotjaGi4g1v0115600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein; TAIR: AT5G66730.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q9LVQ7|IDD1_ARATH Protein indeterminate-domain 1; TrEMBL-Plants: tr|A0A0S3T4U7|A0A0S3T4U7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0115600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16753250..16756586) extracted from Lotus japonicus Gifu genome v1.2.
TTTATAATTAACTATCTGTTTAGTGCGAGCACTTTCACCGTAATATTATTTATTATTTATTGTAGGGCTAAATAAACAAG TAAACTTTGCAGGTTGACTGATGGATATAGACAGAGAGAGGGGGAAAGAAAGAGAGAAGATACTTATTAGTTATTACTCA TTAGAGTGGAAAATAGAAACCCTAGAAATCAGAAGAAAAAAAAAAACCAAAACTTTATCCCCAAACCCAAAAAAGTTGCT TTGGGAATCCAAGTGTAAATGCCCCTAAGATTTTCCCTCTTTGTCAATAGATTGTCCAGTAAGGAAGAACCATTGTTCAA GAGTTTCTAGGAAGAAGCGTTTTCCTCCATGCCTGTTGATTTTGACAATGTTTCCACACCTTCAGGGGAAGCACCTAGTG TTTCTTCCTCTGGTAATCAACCACCACAACCCACAACCAAGAAAAAACGAAACCTTCCTGGAATGCCAGGTACCCAAATG AAAAAACCATCCAAATCTTCATCAACAAGCTTCTGATTTCATTGATTTTGATTTTTCAAATTTGACATAATTTTCACTGT TTTTTTGATGTTTCAGATCCAGAAGCAGAGGTGATTGCTCTGTCACCGAAGACTCTAATGGCGACGAACAGATTCGTATG CGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCACCGGAGAGGTCACAATCTGCCATGGAAGCTGA GGCAGAGGACGAGCAAGGAGGTGAGGAAGAGGGTGTATGTCTGCCCGGAACCAACGTGTGTCCACCATGACCCTTCTCGA GCGTTGGGTGATCTCACCGGAATTAAAAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGAGAAATGCTC CAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGGTTTGCGGTACCAGAGAGTATAAATGTGACTGCGGCA CGGTGTTTTCGAGGTTCTTGTTCATCTTCTTGTGCTTTGTTTTGTTCACTCGTTGATTCTGTTTCTTTCTAGTGTGTGTT TCTGAAATGGGATTTGGTTTGGTTTTGATTTGAAGGAGGGATAGCTTCATTACTCATAGAGCTTTTTGCGATGCGTTGGC AGAGGAGAGTACAAGATCTCAGACTCAGAAGGCGAATTCGGAGTCTGAATCGAAGGTTTTAACGGCTGATTCTTCACCGC CGCCAGCTGCTGCCACTGCCGCCGCCGCTAATGCTTCTACTACTCAGTCAAATAGTGGCATTTCCTCTGCTTTGCAGACA CAGAACCTAGGTAGATCAAATCAAACAGAATCTGGAAAATGTGCAATGTTTTTTTTTTGTCTGGTGTGATGTGGTTAAAA GTAGACAATTACAAAATCAAAACTATGATGTTTTTTGTCTCTGATCTTGGAGCTTAGTAGTTTTTTGTCTGGTTTCGTTT TTTGGTATGATGGGTGTCATCAAGTGATCTGAGATTGTGGGAGCTAATTAAGTAATGAAAATAAACCACTTAAAAAGGTG TTTGTTCTTTGGGATTGTTGTGATGAGATCTAAATTATGCACATAGCTGACAAAGAAACTTCAAAAAGATTCAAAAGCTA AAAAGAGAAAAGATTTGTTTAAAGGGAGGAAAAAAACTATTATTTTGTTCATTACTTCCTGCTATGCACTTTAAGATAAA ACAAAGGCACTAACTTTCTTCAAGTCTAGGTGCATGTTTTAAGTGGCTGCTTTTGCTCTTTCTTTTGTTCTCCTACTAAT TGATGATAATTACTCATTACAATAGTGTTATTGTTGCTTTTGCATCATCTTATTCTCCTTTCTGATGTTTCAGAGTTGCC TGAAAATCCCCAACAAATCAGAGAGGAACCACAAGCTGTTGTTGCTACTGCTGCTTTAAATGGGAGCTGCAGCAGCAGCA GCTGCACCACCACAATCACTGCCACTACCAGCTCCACCTCAATTGCCAATGGTAGTGGTGCTACTAATAATAGCTGTAGT GTGTTTGCAAGCTTGTTTGCCTCCTCAACCGCATCTGGGAGCCTGCACTCTCAAGCACAGCCAGCATTCACGGACCTAAT TAGAGCCATGGGATGTCCCGACCGCCCTGCAGACCTCTCCCTCCCGGCTCCTTCGTCATCTGAGGCCATATCTCTCTGCC TCTCCACCAATCACGGACCATCCATTTTCGGAACTGGAGGGCAGCTGGAGTACCGCCAGTACATGCCATCGCCGCAGCCG CCAGCCATGTCCGCCACTGCATTGCTGCAGAAGGCTGCTCAGATGGATGCTGCCGCCACAAATGCCTCATTGCTTCGCGG GTTGGGCATTGTGTCATCGTCTTCAGCGGCTTCAACTTCATCCGGCCAGCAAGATAGCCTGCAATGGGGTCAGGTGAAAG TGGAGCGGGATAGTGATGGGTTTCCTTCCGGGCTTGGACTTGGGCTTCCTAGTGATGGCGGTTCAGGACTGAAGGAATTG ATGATGGGGACACCTACGGTGTTCGGTGATCCTAAGCAGACCACCCTTGATTTCCTAGGATTGGGGATGGCTGTGGGTGG CAGTTCTGGTGGAGGCATATCTGCACTCATGACATCTATTAGTGGCGGTTTCGATGTTACGACATCATTTGGTAATGGAG GAGAGTTCTCTGGCAAGGACATTGGGAGGAGCTCATGATTTTTTTTTGGAATGCGGGAGGAGCTCATGATAATTGCATGA ACAAATTCTATTAGTGCCCTTGGTTTTCACTCTTATGGACCCATTTCTTGTGCTGAAACCACTTTTAGCAAGATGAAGCT ATAATAGGTAGCTAGCTTTAGGGACAAACGTTCTGTAGTAAAGCATGAAGATTGAAGTGTAACCAAACACACCAAATTTA TCTGGGCCCAAATTTTTGGTTTTAGAGTTACATGTTAGATTTTTTGTGCAATCTGAAGTTGCAATGCTTTAGGGAAGGGT CTATAAATTATGGATATGATGTGAAGTTATGGAGCAATGCAACAACAAATACACAAATGTGAGTCTTTGGAATGTCTTAC CTTCCCTTTCTAATGCGAGGGAAAAGAAAGTTATGTTATGGAAAAAGGTTCATTTACTGGCACAAGTTACAATATGGTTG CTATAAAAACGACACTGTGGTGAGTTACTACAATATCTTGTTTTGGGTTCTTGAGTGTCTACAGTTTTGATGAATTTATG GATTCCGCCATTGAATGATTTGGTACGTAGATGTAGGCATAAATCAGGAAACTTTAATGTAGATTTGCTTTCTCCATCCG TTGAATTATTGACTCACGAGGTGGATTTCCACGTATGCCCCTTATTTGGCAATTAAT
CDS sequence (LotjaGi4g1v0115600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTGTTGATTTTGACAATGTTTCCACACCTTCAGGGGAAGCACCTAGTGTTTCTTCCTCTGGTAATCAACCACCACA ACCCACAACCAAGAAAAAACGAAACCTTCCTGGAATGCCAGATCCAGAAGCAGAGGTGATTGCTCTGTCACCGAAGACTC TAATGGCGACGAACAGATTCGTATGCGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCACCGGAGA GGTCACAATCTGCCATGGAAGCTGAGGCAGAGGACGAGCAAGGAGGTGAGGAAGAGGGTGTATGTCTGCCCGGAACCAAC GTGTGTCCACCATGACCCTTCTCGAGCGTTGGGTGATCTCACCGGAATTAAAAAGCACTTCTGCAGAAAGCACGGTGAGA AGAAGTGGAAATGCGAGAAATGCTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGGTTTGCGGTACC AGAGAGTATAAATGTGACTGCGGCACGGTGTTTTCGAGGAGGGATAGCTTCATTACTCATAGAGCTTTTTGCGATGCGTT GGCAGAGGAGAGTACAAGATCTCAGACTCAGAAGGCGAATTCGGAGTCTGAATCGAAGGTTTTAACGGCTGATTCTTCAC CGCCGCCAGCTGCTGCCACTGCCGCCGCCGCTAATGCTTCTACTACTCAGTCAAATAGTGGCATTTCCTCTGCTTTGCAG ACACAGAACCTAGAGTTGCCTGAAAATCCCCAACAAATCAGAGAGGAACCACAAGCTGTTGTTGCTACTGCTGCTTTAAA TGGGAGCTGCAGCAGCAGCAGCTGCACCACCACAATCACTGCCACTACCAGCTCCACCTCAATTGCCAATGGTAGTGGTG CTACTAATAATAGCTGTAGTGTGTTTGCAAGCTTGTTTGCCTCCTCAACCGCATCTGGGAGCCTGCACTCTCAAGCACAG CCAGCATTCACGGACCTAATTAGAGCCATGGGATGTCCCGACCGCCCTGCAGACCTCTCCCTCCCGGCTCCTTCGTCATC TGAGGCCATATCTCTCTGCCTCTCCACCAATCACGGACCATCCATTTTCGGAACTGGAGGGCAGCTGGAGTACCGCCAGT ACATGCCATCGCCGCAGCCGCCAGCCATGTCCGCCACTGCATTGCTGCAGAAGGCTGCTCAGATGGATGCTGCCGCCACA AATGCCTCATTGCTTCGCGGGTTGGGCATTGTGTCATCGTCTTCAGCGGCTTCAACTTCATCCGGCCAGCAAGATAGCCT GCAATGGGGTCAGGTGAAAGTGGAGCGGGATAGTGATGGGTTTCCTTCCGGGCTTGGACTTGGGCTTCCTAGTGATGGCG GTTCAGGACTGAAGGAATTGATGATGGGGACACCTACGGTGTTCGGTGATCCTAAGCAGACCACCCTTGATTTCCTAGGA TTGGGGATGGCTGTGGGTGGCAGTTCTGGTGGAGGCATATCTGCACTCATGACATCTATTAGTGGCGGTTTCGATGTTAC GACATCATTTGGTAATGGAGGAGAGTTCTCTGGCAAGGACATTGGGAGGAGCTCATGA
Protein sequence (LotjaGi4g1v0115600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPVDFDNVSTPSGEAPSVSSSGNQPPQPTTKKKRNLPGMPDPEAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRR GHNLPWKLRQRTSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKVCGT REYKCDCGTVFSRRDSFITHRAFCDALAEESTRSQTQKANSESESKVLTADSSPPPAAATAAAANASTTQSNSGISSALQ TQNLELPENPQQIREEPQAVVATAALNGSCSSSSCTTTITATTSSTSIANGSGATNNSCSVFASLFASSTASGSLHSQAQ PAFTDLIRAMGCPDRPADLSLPAPSSSEAISLCLSTNHGPSIFGTGGQLEYRQYMPSPQPPAMSATALLQKAAQMDAAAT NASLLRGLGIVSSSSAASTSSGQQDSLQWGQVKVERDSDGFPSGLGLGLPSDGGSGLKELMMGTPTVFGDPKQTTLDFLG LGMAVGGSSGGGISALMTSISGGFDVTTSFGNGGEFSGKDIGRSS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 43 | 43 | - | – | |
| MobiDBLite | 10 | 31 | 22 | - | – | |
| PANTHER | 10 | 508 | 499 | 5.6E-202 | – | |
| PANTHER | 10 | 508 | 499 | 5.6E-202 | – | |
| Gene3D | 56 | 83 | 28 | 1.4E-5 | – | |
| SUPERFAMILY | 59 | 156 | 98 | 1.54E-6 | ||
| SMART | 60 | 82 | 23 | 0.017 | ||
| Pfam | 60 | 82 | 23 | 0.0052 | ||
| ProSiteProfiles | 60 | 82 | 23 | 10.949 | ||
| ProSitePatterns | 62 | 82 | 21 | - | ||
| SMART | 101 | 131 | 31 | 190.0 | ||
| Gene3D | 114 | 195 | 82 | 3.6E-6 | – | |
| SMART | 136 | 156 | 21 | 140.0 | ||
| MobiDBLite | 193 | 210 | 18 | - | – | |
| MobiDBLite | 193 | 236 | 44 | - | – | |
| MobiDBLite | 222 | 236 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0115600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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