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LotjaGi4g1v0115600.3

Overview

Field Value
Gene ID LotjaGi4g1v0115600
Transcript ID LotjaGi4g1v0115600.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Zinc finger protein; TAIR: AT5G66730.1 C2H2-like zinc finger protein; Swiss-Prot: sp|Q9LVQ7|IDD1_ARATH Protein indeterminate-domain 1; TrEMBL-Plants: tr|A9T4T1|A9T4T1_PHYPA Predicted protein; Found in the gene: LotjaGi4g1v0115600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:16755503..16756014) extracted from Lotus japonicus Gifu genome v1.2.

TCAGATCCAGAAGCAGAGGTGATTGCTCTGTCACCGAAGACTCTAATGGCGACGAACAGATTCGTATGCGAAATTTGCAA CAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCACCGGAGAGGTCACAATCTGCCATGGAAGCTGAGGCAGAGGACGA GCAAGGAGGTGAGGAAGAGGGTGTATGTCTGCCCGGAACCAACGTGTGTCCACCATGACCCTTCTCGAGCGTTGGGTGAT CTCACCGGAATTAAAAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGCGAGAAATGCTCCAAGAAATATGC AGTTCAATCTGATTGGAAAGCTCACTCCAAGGTTTGCGGTACCAGAGAGTATAAATGTGACTGCGGCACGGTGTTTTCGA GGTTCTTGTTCATCTTCTTGTGCTTTGTTTTGTTCACTCGTTGATTCTGTTTCTTTCTAGTGTGTGTTTCTGAAATGGGA TTTGGTTTGGTTTTGATTTGAAGGAGGGATAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0115600.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGACGAACAGATTCGTATGCGAAATTTGCAACAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTTCACCGGAGAGG TCACAATCTGCCATGGAAGCTGAGGCAGAGGACGAGCAAGGAGGTGAGGAAGAGGGTGTATGTCTGCCCGGAACCAACGT GTGTCCACCATGACCCTTCTCGAGCGTTGGGTGATCTCACCGGAATTAAAAAGCACTTCTGCAGAAAGCACGGTGAGAAG AAGTGGAAATGCGAGAAATGCTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGGTTTGCGGTACCAG AGAGTATAAATGTGACTGCGGCACGGTGTTTTCGAGTGTGTGTTTCTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0115600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEK KWKCEKCSKKYAVQSDWKAHSKVCGTREYKCDCGTVFSSVCF
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10593:SF120
1 118 118 7.3E-105 –
PANTHER
PTHR10593
1 118 118 7.3E-105 –
Gene3D
G3DSA:3.30.160.60
2 29 28 1.9E-6 –
SUPERFAMILY
SSF57667
5 102 98 1.02E-7
IPR036236
Pfam
PF12171
6 28 23 2.1E-5
IPR022755
ProSiteProfiles
PS50157
6 28 23 10.949
IPR013087
SMART
SM00355
6 28 23 0.017
IPR013087
ProSitePatterns
PS00028
8 28 21 -
IPR013087
Gene3D
G3DSA:3.30.160.60
39 120 82 6.7E-5 –
SMART
SM00355
47 77 31 190.0
IPR013087
SMART
SM00355
82 102 21 140.0
IPR013087

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0115600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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