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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0116000 |
| Transcript ID | LotjaGi4g1v0116000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT4G36670.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q8GXR2|PLT6_ARATH Probable polyol transporter 6; TrEMBL-Plants: tr|Q1XF10|Q1XF10_LOTJA Putative polyol transporter 1; Found in the gene: LotjaGi4g1v0116000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16811919..16814627) extracted from Lotus japonicus Gifu genome v1.2.
AGTTCTTATAACAAATGTTACAACTTACAATATAGATATGGACAAGTATAAGCAAGTTGACAGGATTCCACCTTAACCCA ACCCAGATTTTAATTTCATACGTTTAACCAACTATAGGTATATCTTTATCTTATTCTTATAACAAATTTAAGTCTAATTT TATCCTCTTCTATTTTCCCTTTTTTTTACCAGTTTCTATCTAGTATGCTTCGTCATCTTTTACCCTCATTTAGGCATATC ATATTCAGTATTGCAGCAACCATATCCAGCTATTATCTCTTTCTATTATGTATCATCAGGTCAATGATACCTTGTTCACC CTATAATTAGACCTCTACTCCTATATAAAAAGAATTGGAAACACGAAAAATGGAAAAATAACACATAGTTGATAAGTCTT CATTCTTATCAAGATTTTGCACGAAGATAATAAGAGAAAGCCTTTAATATATCATCACAATGGAGCAGGGTGGTAATGAA GACAAGGACACGACGATCAACAAATACGCCTTAGCTTGTGTCATAGTCGCTTCAATGGTATCCATCATATCTGGTTATGG TAATATTGCAATCTCTTGCATCCTTTTATCTTATTTTTTTAATTTCTCCTATATTTTCTAACCATGTCACCCTTTTTTGG CCCCTGTAACACCACGGGATACATAAGTTTTTTTCAGCCAAAACATGTTCCTTAGGAACCTCCTTAGATAAGTACAAAAC TTGTAAATATTGTTAACTAGATAATACACACGTTTGATTTCAGATACTGGTGTCATGAGTGGAGCTCTGCTATTCATAAA GGAAGATATCGGAATTAGCGACACCCAACAAGAAGTTCTAGCAGGAATCTTAAACATATGTGCTCTGGTGGGATGCTTAG CTGCTGGAAAAACCTCTGATTACATTGGTCGTCGCTACACAATCTTCTTGGCCTCTATCCTCTTCTTGGTTGGTGCAGTT TTCATGGGTTATGGCCCAAACTTTGCAATCTTAATGTTTGGAAGATGTGTGTGTGGTCTGGGTGTGGGATTTGCTCTCAC AACAGCACCAGTTTACTCTGCAGAGCTTTCCTCTGCATCAACTCGAGGTTTTCTAACTTCCTTACCTGAAGTTTGCATTG GTCTTGGGATATTTATCGGATATATCTCAAACTACTTCCTCGGGAAACTAGCTTTAACACTTGGATGGAGACTGATGCTT GGCCTTGCAGCAATTCCTTCACTTGGCTTGGCTTTGGGAATTCTAACAATGCCAGAGTCTCCAAGGTGGTTGGTGATGCA GGGTCGTCTAGGATGTGCCAAGAAGGTACTTTTGGAAGTTTCTAATACCACAGAAGAGGCTGAACTTCGCTTCAGAGATA TAATAGTTTCTGCTGGGTTTGATGAGAAGTGCAATGATGAGTTCGTGAAGCAGCCTCAAAAGTCCCACCATGGCGAAGGG GTTTGGAAAGAGTTGTTCCTGAGGCCCACACCACCTGTTCGTCGGATGTTGATTGCTGCAGTTGGAATTCACTTCTTTGA GCATGCAACTGGAATTGAAGCTGTGATGTTGTATGGTCCGAGAATATTTAAGAAAGCTGGTGTTACAACCAAGGACAGAC TCTTACTTGCAACAATTGGAACAGGCCTTACAAAGATCACTTTCTTGACAATATCCACATTTTTGCTTGACAGAGTTGGT AGAAGACGCCTCTTACAAATAAGCGTTGCAGGAATGATTTTCGGGCTTACAATTTTGGGCTTCAGCTTGACCATGGTGGA ATACTCTAGTGAAAAGCTTGTGTGGGCCTTGAGCCTTAGCATTGTGGCAACATACACTTATGTTGCTTTCTTTAATGTTG GGCTTGCACCTGTGACATGGGTGTATAGTTCAGAGATATTCCCTTTGAGGTTGAGAGCACAAGGGAATAGCATAGGAGTT GCGGTCAACAGAGGCATGAATGCTGCTATCTCCATGAGTTTTATTTCCATCTACAAAGCAATCACTATAGGTGGGGCCTT CTTCTTGTTTGCTGGCATGTCTGTGGTAGCTTGGGTGTTCTTTTACTTCTGCCTTCCTGAAACCAAAGGCAAGGCCTTAG AAGAGATGGAAATGGTCTTCTCCAAAAAATCCGATGATAAAACTGTAGCGACATGAGCGAATACAAGATGATTGTGTTTG GTAGAAACAACATTGGACAAGATGGCGTGTGCAATTTGGCTTAAGGCTATTAATATAATCAACATTTTCCATGTTAATCG GTCGGGGATACATGCAAATAATTCTTCATCATCCTTCTTTAGAAAATTGTACATCATAAAAAATTTCCCTTGTAAATATA TAAAAAAAAATTGCCCTTGTAATTTTTTGTAACATGGAAAAATCTTAAGAGTATTTTTATCTCATTTTCTACCAGTACCA AGGCAATATTTCAATCAAGAAAATTAGTGGTAAAAGAATACGTTCTCTTTCTATCACACATTTTGTCATCATTTTTTCTT TGTCTTCTATTTTTTTTTCTGAAGTGGAATTTCTCCTATTTTCATTCTTTTCTCTTTATATTTCCATCCTTATAAGTAGG AGAGATGCTAGAGCATCATTATTACATAAAAATAAAATGTAAAGTTCAAAATTACAATTTTAGGTTGTTCATTAAGAGTA TCTTTTATGGTCAACATGAACATCTAATCCCTTTAATCCAATACTTATGATATAGTTTCTTGATAAGCA
CDS sequence (LotjaGi4g1v0116000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCAGGGTGGTAATGAAGACAAGGACACGACGATCAACAAATACGCCTTAGCTTGTGTCATAGTCGCTTCAATGGT ATCCATCATATCTGGTTATGATACTGGTGTCATGAGTGGAGCTCTGCTATTCATAAAGGAAGATATCGGAATTAGCGACA CCCAACAAGAAGTTCTAGCAGGAATCTTAAACATATGTGCTCTGGTGGGATGCTTAGCTGCTGGAAAAACCTCTGATTAC ATTGGTCGTCGCTACACAATCTTCTTGGCCTCTATCCTCTTCTTGGTTGGTGCAGTTTTCATGGGTTATGGCCCAAACTT TGCAATCTTAATGTTTGGAAGATGTGTGTGTGGTCTGGGTGTGGGATTTGCTCTCACAACAGCACCAGTTTACTCTGCAG AGCTTTCCTCTGCATCAACTCGAGGTTTTCTAACTTCCTTACCTGAAGTTTGCATTGGTCTTGGGATATTTATCGGATAT ATCTCAAACTACTTCCTCGGGAAACTAGCTTTAACACTTGGATGGAGACTGATGCTTGGCCTTGCAGCAATTCCTTCACT TGGCTTGGCTTTGGGAATTCTAACAATGCCAGAGTCTCCAAGGTGGTTGGTGATGCAGGGTCGTCTAGGATGTGCCAAGA AGGTACTTTTGGAAGTTTCTAATACCACAGAAGAGGCTGAACTTCGCTTCAGAGATATAATAGTTTCTGCTGGGTTTGAT GAGAAGTGCAATGATGAGTTCGTGAAGCAGCCTCAAAAGTCCCACCATGGCGAAGGGGTTTGGAAAGAGTTGTTCCTGAG GCCCACACCACCTGTTCGTCGGATGTTGATTGCTGCAGTTGGAATTCACTTCTTTGAGCATGCAACTGGAATTGAAGCTG TGATGTTGTATGGTCCGAGAATATTTAAGAAAGCTGGTGTTACAACCAAGGACAGACTCTTACTTGCAACAATTGGAACA GGCCTTACAAAGATCACTTTCTTGACAATATCCACATTTTTGCTTGACAGAGTTGGTAGAAGACGCCTCTTACAAATAAG CGTTGCAGGAATGATTTTCGGGCTTACAATTTTGGGCTTCAGCTTGACCATGGTGGAATACTCTAGTGAAAAGCTTGTGT GGGCCTTGAGCCTTAGCATTGTGGCAACATACACTTATGTTGCTTTCTTTAATGTTGGGCTTGCACCTGTGACATGGGTG TATAGTTCAGAGATATTCCCTTTGAGGTTGAGAGCACAAGGGAATAGCATAGGAGTTGCGGTCAACAGAGGCATGAATGC TGCTATCTCCATGAGTTTTATTTCCATCTACAAAGCAATCACTATAGGTGGGGCCTTCTTCTTGTTTGCTGGCATGTCTG TGGTAGCTTGGGTGTTCTTTTACTTCTGCCTTCCTGAAACCAAAGGCAAGGCCTTAGAAGAGATGGAAATGGTCTTCTCC AAAAAATCCGATGATAAAACTGTAGCGACATGA
Protein sequence (LotjaGi4g1v0116000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEQGGNEDKDTTINKYALACVIVASMVSIISGYDTGVMSGALLFIKEDIGISDTQQEVLAGILNICALVGCLAAGKTSDY IGRRYTIFLASILFLVGAVFMGYGPNFAILMFGRCVCGLGVGFALTTAPVYSAELSSASTRGFLTSLPEVCIGLGIFIGY ISNYFLGKLALTLGWRLMLGLAAIPSLGLALGILTMPESPRWLVMQGRLGCAKKVLLEVSNTTEEAELRFRDIIVSAGFD EKCNDEFVKQPQKSHHGEGVWKELFLRPTPPVRRMLIAAVGIHFFEHATGIEAVMLYGPRIFKKAGVTTKDRLLLATIGT GLTKITFLTISTFLLDRVGRRRLLQISVAGMIFGLTILGFSLTMVEYSSEKLVWALSLSIVATYTYVAFFNVGLAPVTWV YSSEIFPLRLRAQGNSIGVAVNRGMNAAISMSFISIYKAITIGGAFFLFAGMSVVAWVFFYFCLPETKGKALEEMEMVFS KKSDDKTVAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| PANTHER | 9 | 486 | 478 | 1.9E-215 | – | |
| Gene3D | 9 | 484 | 476 | 4.7E-124 | – | |
| PANTHER | 9 | 486 | 478 | 1.9E-215 | – | |
| SUPERFAMILY | 10 | 476 | 467 | 4.71E-67 | ||
| TIGRFAM | 16 | 475 | 460 | 2.9E-98 | ||
| Phobius | 16 | 33 | 18 | - | – | |
| ProSiteProfiles | 20 | 468 | 449 | 48.767 | ||
| TMHMM | 21 | 43 | 23 | - | – | |
| Pfam | 21 | 479 | 459 | 1.6E-103 | ||
| CDD | 23 | 475 | 453 | 0.0 | – | |
| PRINTS | 28 | 38 | 11 | 2.5E-19 | ||
| Phobius | 34 | 57 | 24 | - | – | |
| Phobius | 58 | 75 | 18 | - | – | |
| TMHMM | 58 | 75 | 18 | - | – | |
| ProSitePatterns | 74 | 91 | 18 | - | ||
| Phobius | 76 | 86 | 11 | - | – | |
| Phobius | 87 | 103 | 17 | - | – | |
| TMHMM | 87 | 104 | 18 | - | – | |
| Phobius | 104 | 108 | 5 | - | – | |
| Phobius | 109 | 131 | 23 | - | – | |
| TMHMM | 109 | 131 | 23 | - | – | |
| PRINTS | 111 | 130 | 20 | 2.5E-19 | ||
| ProSitePatterns | 116 | 141 | 26 | - | ||
| Phobius | 132 | 142 | 11 | - | – | |
| Phobius | 143 | 161 | 19 | - | – | |
| TMHMM | 143 | 162 | 20 | - | – | |
| Phobius | 162 | 172 | 11 | - | – | |
| TMHMM | 172 | 194 | 23 | - | – | |
| Phobius | 173 | 196 | 24 | - | – | |
| Phobius | 197 | 312 | 116 | - | – | |
| TMHMM | 276 | 298 | 23 | - | – | |
| PRINTS | 286 | 296 | 11 | 2.5E-19 | ||
| TMHMM | 313 | 335 | 23 | - | – | |
| Phobius | 313 | 334 | 22 | - | – | |
| Phobius | 335 | 345 | 11 | - | – | |
| TMHMM | 342 | 364 | 23 | - | – | |
| Phobius | 346 | 365 | 20 | - | – | |
| Phobius | 366 | 371 | 6 | - | – | |
| Phobius | 372 | 401 | 30 | - | – | |
| TMHMM | 379 | 401 | 23 | - | – | |
| PRINTS | 380 | 401 | 22 | 2.5E-19 | ||
| Phobius | 402 | 439 | 38 | - | – | |
| PRINTS | 403 | 415 | 13 | 2.5E-19 | ||
| TMHMM | 439 | 461 | 23 | - | – | |
| Phobius | 440 | 464 | 25 | - | – | |
| Phobius | 465 | 490 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0116000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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