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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0116000 |
| Transcript ID | LotjaGi4g1v0116000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter, putative; TAIR: AT4G36670.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q8GXR2|PLT6_ARATH Probable polyol transporter 6; TrEMBL-Plants: tr|Q1XF10|Q1XF10_LOTJA Putative polyol transporter 1; Found in the gene: LotjaGi4g1v0116000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:16811919..16814627) extracted from Lotus japonicus Gifu genome v1.2.
AGTTCTTATAACAAATGTTACAACTTACAATATAGATATGGACAAGTATAAGCAAGTTGACAGGATTCCACCTTAACCCA ACCCAGATTTTAATTTCATACGTTTAACCAACTATAGGTATATCTTTATCTTATTCTTATAACAAATTTAAGTCTAATTT TATCCTCTTCTATTTTCCCTTTTTTTTACCAGTTTCTATCTAGTATGCTTCGTCATCTTTTACCCTCATTTAGGCATATC ATATTCAGTATTGCAGCAACCATATCCAGCTATTATCTCTTTCTATTATGTATCATCAGGTCAATGATACCTTGTTCACC CTATAATTAGACCTCTACTCCTATATAAAAAGAATTGGAAACACGAAAAATGGAAAAATAACACATAGTTGATAAGTCTT CATTCTTATCAAGATTTTGCACGAAGATAATAAGAGAAAGCCTTTAATATATCATCACAATGGAGCAGGGTGGTAATGAA GACAAGGACACGACGATCAACAAATACGCCTTAGCTTGTGTCATAGTCGCTTCAATGGTATCCATCATATCTGGTTATGG TAATATTGCAATCTCTTGCATCCTTTTATCTTATTTTTTTAATTTCTCCTATATTTTCTAACCATGTCACCCTTTTTTGG CCCCTGTAACACCACGGGATACATAAGTTTTTTTCAGCCAAAACATGTTCCTTAGGAACCTCCTTAGATAAGTACAAAAC TTGTAAATATTGTTAACTAGATAATACACACGTTTGATTTCAGATACTGGTGTCATGAGTGGAGCTCTGCTATTCATAAA GGAAGATATCGGAATTAGCGACACCCAACAAGAAGTTCTAGCAGGAATCTTAAACATATGTGCTCTGGTGGGATGCTTAG CTGCTGGAAAAACCTCTGATTACATTGGTCGTCGCTACACAATCTTCTTGGCCTCTATCCTCTTCTTGGTTGGTGCAGTT TTCATGGGTTATGGCCCAAACTTTGCAATCTTAATGTTTGGAAGATGTGTGTGTGGTCTGGGTGTGGGATTTGCTCTCAC AACAGCACCAGTTTACTCTGCAGAGCTTTCCTCTGCATCAACTCGAGGTTTTCTAACTTCCTTACCTGAAGTTTGCATTG GTCTTGGGATATTTATCGGATATATCTCAAACTACTTCCTCGGGAAACTAGCTTTAACACTTGGATGGAGACTGATGCTT GGCCTTGCAGCAATTCCTTCACTTGGCTTGGCTTTGGGAATTCTAACAATGCCAGAGTCTCCAAGGTGGTTGGTGATGCA GGGTCGTCTAGGATGTGCCAAGAAGGTACTTTTGGAAGTTTCTAATACCACAGAAGAGGCTGAACTTCGCTTCAGAGATA TAATAGTTTCTGCTGGGTTTGATGAGAAGTGCAATGATGAGTTCGTGAAGCAGCCTCAAAAGTCCCACCATGGCGAAGGG GTTTGGAAAGAGTTGTTCCTGAGGCCCACACCACCTGTTCGTCGGATGTTGATTGCTGCAGTTGGAATTCACTTCTTTGA GCATGCAACTGGAATTGAAGCTGTGATGTTGTATGGTCCGAGAATATTTAAGAAAGCTGGTGTTACAACCAAGGACAGAC TCTTACTTGCAACAATTGGAACAGGCCTTACAAAGATCACTTTCTTGACAATATCCACATTTTTGCTTGACAGAGTTGGT AGAAGACGCCTCTTACAAATAAGCGTTGCAGGAATGATTTTCGGGCTTACAATTTTGGGCTTCAGCTTGACCATGGTGGA ATACTCTAGTGAAAAGCTTGTGTGGGCCTTGAGCCTTAGCATTGTGGCAACATACACTTATGTTGCTTTCTTTAATGTTG GGCTTGCACCTGTGACATGGGTGTATAGTTCAGAGATATTCCCTTTGAGGTTGAGAGCACAAGGGAATAGCATAGGAGTT GCGGTCAACAGAGGCATGAATGCTGCTATCTCCATGAGTTTTATTTCCATCTACAAAGCAATCACTATAGGTGGGGCCTT CTTCTTGTTTGCTGGCATGTCTGTGGTAGCTTGGGTGTTCTTTTACTTCTGCCTTCCTGAAACCAAAGGCAAGGCCTTAG AAGAGATGGAAATGGTCTTCTCCAAAAAATCCGATGATAAAACTGTAGCGACATGAGCGAATACAAGATGATTGTGTTTG GTAGAAACAACATTGGACAAGATGGCGTGTGCAATTTGGCTTAAGGCTATTAATATAATCAACATTTTCCATGTTAATCG GTCGGGGATACATGCAAATAATTCTTCATCATCCTTCTTTAGAAAATTGTACATCATAAAAAATTTCCCTTGTAAATATA TAAAAAAAAATTGCCCTTGTAATTTTTTGTAACATGGAAAAATCTTAAGAGTATTTTTATCTCATTTTCTACCAGTACCA AGGCAATATTTCAATCAAGAAAATTAGTGGTAAAAGAATACGTTCTCTTTCTATCACACATTTTGTCATCATTTTTTCTT TGTCTTCTATTTTTTTTTCTGAAGTGGAATTTCTCCTATTTTCATTCTTTTCTCTTTATATTTCCATCCTTATAAGTAGG AGAGATGCTAGAGCATCATTATTACATAAAAATAAAATGTAAAGTTCAAAATTACAATTTTAGGTTGTTCATTAAGAGTA TCTTTTATGGTCAACATGAACATCTAATCCCTTTAATCCAATACTTATGATATAGTTTCTTGATAAGCA
CDS sequence (LotjaGi4g1v0116000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTATCCATCATATCTGGTTATGATACTGGTGTCATGAGTGGAGCTCTGCTATTCATAAAGGAAGATATCGGAATTAG CGACACCCAACAAGAAGTTCTAGCAGGAATCTTAAACATATGTGCTCTGGTGGGATGCTTAGCTGCTGGAAAAACCTCTG ATTACATTGGTCGTCGCTACACAATCTTCTTGGCCTCTATCCTCTTCTTGGTTGGTGCAGTTTTCATGGGTTATGGCCCA AACTTTGCAATCTTAATGTTTGGAAGATGTGTGTGTGGTCTGGGTGTGGGATTTGCTCTCACAACAGCACCAGTTTACTC TGCAGAGCTTTCCTCTGCATCAACTCGAGGTTTTCTAACTTCCTTACCTGAAGTTTGCATTGGTCTTGGGATATTTATCG GATATATCTCAAACTACTTCCTCGGGAAACTAGCTTTAACACTTGGATGGAGACTGATGCTTGGCCTTGCAGCAATTCCT TCACTTGGCTTGGCTTTGGGAATTCTAACAATGCCAGAGTCTCCAAGGTGGTTGGTGATGCAGGGTCGTCTAGGATGTGC CAAGAAGGTACTTTTGGAAGTTTCTAATACCACAGAAGAGGCTGAACTTCGCTTCAGAGATATAATAGTTTCTGCTGGGT TTGATGAGAAGTGCAATGATGAGTTCGTGAAGCAGCCTCAAAAGTCCCACCATGGCGAAGGGGTTTGGAAAGAGTTGTTC CTGAGGCCCACACCACCTGTTCGTCGGATGTTGATTGCTGCAGTTGGAATTCACTTCTTTGAGCATGCAACTGGAATTGA AGCTGTGATGTTGTATGGTCCGAGAATATTTAAGAAAGCTGGTGTTACAACCAAGGACAGACTCTTACTTGCAACAATTG GAACAGGCCTTACAAAGATCACTTTCTTGACAATATCCACATTTTTGCTTGACAGAGTTGGTAGAAGACGCCTCTTACAA ATAAGCGTTGCAGGAATGATTTTCGGGCTTACAATTTTGGGCTTCAGCTTGACCATGGTGGAATACTCTAGTGAAAAGCT TGTGTGGGCCTTGAGCCTTAGCATTGTGGCAACATACACTTATGTTGCTTTCTTTAATGTTGGGCTTGCACCTGTGACAT GGGTGTATAGTTCAGAGATATTCCCTTTGAGGTTGAGAGCACAAGGGAATAGCATAGGAGTTGCGGTCAACAGAGGCATG AATGCTGCTATCTCCATGAGTTTTATTTCCATCTACAAAGCAATCACTATAGGTGGGGCCTTCTTCTTGTTTGCTGGCAT GTCTGTGGTAGCTTGGGTGTTCTTTTACTTCTGCCTTCCTGAAACCAAAGGCAAGGCCTTAGAAGAGATGGAAATGGTCT TCTCCAAAAAATCCGATGATAAAACTGTAGCGACATGA
Protein sequence (LotjaGi4g1v0116000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSIISGYDTGVMSGALLFIKEDIGISDTQQEVLAGILNICALVGCLAAGKTSDYIGRRYTIFLASILFLVGAVFMGYGP NFAILMFGRCVCGLGVGFALTTAPVYSAELSSASTRGFLTSLPEVCIGLGIFIGYISNYFLGKLALTLGWRLMLGLAAIP SLGLALGILTMPESPRWLVMQGRLGCAKKVLLEVSNTTEEAELRFRDIIVSAGFDEKCNDEFVKQPQKSHHGEGVWKELF LRPTPPVRRMLIAAVGIHFFEHATGIEAVMLYGPRIFKKAGVTTKDRLLLATIGTGLTKITFLTISTFLLDRVGRRRLLQ ISVAGMIFGLTILGFSLTMVEYSSEKLVWALSLSIVATYTYVAFFNVGLAPVTWVYSSEIFPLRLRAQGNSIGVAVNRGM NAAISMSFISIYKAITIGGAFFLFAGMSVVAWVFFYFCLPETKGKALEEMEMVFSKKSDDKTVAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 461 | 461 | 8.6E-212 | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| PANTHER | 1 | 461 | 461 | 8.6E-212 | – | |
| CDD | 1 | 450 | 450 | 0.0 | – | |
| Gene3D | 1 | 459 | 459 | 1.4E-120 | – | |
| ProSiteProfiles | 1 | 443 | 443 | 48.363 | ||
| SUPERFAMILY | 3 | 451 | 449 | 8.37E-64 | ||
| Pfam | 3 | 454 | 452 | 3.3E-102 | ||
| PRINTS | 3 | 13 | 11 | 2.0E-19 | ||
| TIGRFAM | 3 | 450 | 448 | 5.0E-96 | ||
| TMHMM | 33 | 50 | 18 | - | – | |
| Phobius | 33 | 50 | 18 | - | – | |
| ProSitePatterns | 49 | 66 | 18 | - | ||
| Phobius | 51 | 61 | 11 | - | – | |
| Phobius | 62 | 78 | 17 | - | – | |
| TMHMM | 62 | 79 | 18 | - | – | |
| Phobius | 79 | 83 | 5 | - | – | |
| TMHMM | 84 | 106 | 23 | - | – | |
| Phobius | 84 | 106 | 23 | - | – | |
| PRINTS | 86 | 105 | 20 | 2.0E-19 | ||
| ProSitePatterns | 91 | 116 | 26 | - | ||
| Phobius | 107 | 117 | 11 | - | – | |
| Phobius | 118 | 136 | 19 | - | – | |
| TMHMM | 118 | 137 | 20 | - | – | |
| Phobius | 137 | 147 | 11 | - | – | |
| TMHMM | 147 | 169 | 23 | - | – | |
| Phobius | 148 | 171 | 24 | - | – | |
| Phobius | 172 | 287 | 116 | - | – | |
| TMHMM | 251 | 273 | 23 | - | – | |
| PRINTS | 261 | 271 | 11 | 2.0E-19 | ||
| TMHMM | 288 | 310 | 23 | - | – | |
| Phobius | 288 | 309 | 22 | - | – | |
| Phobius | 310 | 320 | 11 | - | – | |
| TMHMM | 317 | 339 | 23 | - | – | |
| Phobius | 321 | 340 | 20 | - | – | |
| Phobius | 341 | 346 | 6 | - | – | |
| Phobius | 347 | 376 | 30 | - | – | |
| TMHMM | 354 | 376 | 23 | - | – | |
| PRINTS | 355 | 376 | 22 | 2.0E-19 | ||
| Phobius | 377 | 414 | 38 | - | – | |
| PRINTS | 378 | 390 | 13 | 2.0E-19 | ||
| TMHMM | 414 | 436 | 23 | - | – | |
| Phobius | 415 | 439 | 25 | - | – | |
| Phobius | 440 | 465 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0116000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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