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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0118100 |
| Transcript ID | LotjaGi4g1v0118100.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Sugar transporter protein; TAIR: AT1G75220.1 Major facilitator superfamily protein; Swiss-Prot: sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6; TrEMBL-Plants: tr|I1MNF3|I1MNF3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0118100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:17085310..17086029) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGGGAGCTATAGCGAGTGGTCAGATAGCAGAATACGTCGGGCGAAAAGGGGTATGTTTTGTTTTGCATGATTTGTT TATCTGTTTTGAACTAACTCTATTGAAGGAATGACTCTGAATGTGATGATTGGTTTGATTTGAATGTTGTAGTCATTGAT GATTGCTGCAATTCCCAATATAATAGGGTGGCTCGCCATTTCTTTCGCGAAGGTAAGAGATCTTTGCTTTTAATTGTGTA ATCTATGATATGGACTTCTTTCTGGTTTTGTTTGTGTGATTTAAGTTTGTTGCCTAAAATGGGGGTGTTGTTGCTTCTAT AGGACTACTCGTTTTTGTATATGGGGAGGTTGTTGGAAGGATTTGGCGTTGGGATTATTTCTTATGTGGTAAGCTTGACT GCCCTATTTGATCTTTTCACTTGTTGGTTCTATTTGGAAACATTGCTGAGTAAGAGCTGTCTGTGAACTGGTTTTTCTTC TGTTTAGGTGCCTGTGTATATAGCCGAGATAGCACCTGAAAACTTGAGGGGTGGCCTTGGATCGGTGAACCAGGTTAAAA AATTGTTGTTGTGTCTGGATGCTGAGCTCATCTCTTATTTTTCTGTTCCTTCTTGTTTTAAATTTGTAATCTATTATTGA TTATTCATGTAATTTGTCTGCCTCAGCTCTCTGTTACAATTGGAATATTGCTTGCTTATCTGTTGGGCCTTTTTGTCAAC
CDS sequence (LotjaGi4g1v0118100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGGAGCTATAGCGAGTGGTCAGATAGCAGAATACGTCGGGCGAAAAGGGTCATTGATGATTGCTGCAATTCCCAA TATAATAGGGTGGCTCGCCATTTCTTTCGCGAAGGACTACTCGTTTTTGTATATGGGGAGGTTGTTGGAAGGATTTGGCG TTGGGATTATTTCTTATGTGGTGCCTGTGTATATAGCCGAGATAGCACCTGAAAACTTGAGGGGTGGCCTTGGATCGGTG AACCAGGTTAAAAAATTGTTGTTGTGTCTGGATGCTGAGCTCATCTCTTATTTTTCTGTTCCTTCTTGTTTTAAATTTGT AATCTATTATTGA
Protein sequence (LotjaGi4g1v0118100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGAIASGQIAEYVGRKGSLMIAAIPNIIGWLAISFAKDYSFLYMGRLLEGFGVGIISYVVPVYIAEIAPENLRGGLGSV NQVKKLLLCLDAELISYFSVPSCFKFVIYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 82 | 82 | 2.49E-15 | ||
| Pfam | 1 | 83 | 83 | 5.1E-22 | ||
| PANTHER | 1 | 99 | 99 | 1.0E-57 | – | |
| PANTHER | 1 | 99 | 99 | 1.0E-57 | – | |
| Gene3D | 1 | 100 | 100 | 9.6E-23 | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| ProSiteProfiles | 1 | 110 | 110 | 18.779 | ||
| CDD | 1 | 83 | 83 | 2.69114E-35 | – | |
| ProSitePatterns | 7 | 24 | 18 | - | ||
| TMHMM | 20 | 37 | 18 | - | – | |
| Phobius | 20 | 37 | 18 | - | – | |
| Phobius | 38 | 42 | 5 | - | – | |
| Phobius | 43 | 65 | 23 | - | – | |
| TMHMM | 44 | 66 | 23 | - | – | |
| ProSitePatterns | 49 | 74 | 26 | - | ||
| Phobius | 66 | 85 | 20 | - | – | |
| Phobius | 86 | 108 | 23 | - | – | |
| Phobius | 109 | 110 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0118100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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