Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0123100 |
| Transcript ID | LotjaGi4g1v0123100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein SHI RELATED SEQUENCE 1; TAIR: AT5G66350.1 Lateral root primordium (LRP) protein-like protein; Swiss-Prot: sp|Q9XGX0|SHI_ARATH Protein SHORT INTERNODES; TrEMBL-Plants: tr|V7CD60|V7CD60_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0123100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:17759428..17764813) extracted from Lotus japonicus Gifu genome v1.2.
GTGTGTAGTGGTTTTTTGTCACGGTGTGAAGTTAATCACACAGGCTTCAGACACAAAAGGAGAAACTGGTCAGAAGTAGA AAAAGAGCTCATAAACTCTGCTGAAAAAATCAGAAAGAGAAAGAGAAAGAGAAAGAGAGTAAGACTTTTATTTATTAAAT TGAAGGAAGCTAGCTGCCTGCATCAGAGCGTGTTACAGAGAGAGGGGCATGGCGGCGTTTGCAGGGATGGATAGCTGTAA AAAACAACAAACTACAACAACAACAACACTGTGGTACTGTTGGTCCTGTGTTATTAATTATTAATGCATCATAAAATTAT ATTATATTTTTTATTTCTACTACTACACACTATTACTACTACAACATACAAATGCAGAAGCCGGAGAAGCAGAATTGAAA CTTGAAACCGCGATTAACGCTACCTAGCTGCACGACACTGTTCAACGTTGTCTTCTGTCCTAACCAACGAACCTTCAATT ACCCTTTCCCCAGCTCCAACGAAACACAAACTAAAACACAACCCTTAACCAGAGACAAAAAAAAAAATGTGTCTGTCTCT CTCTGTTCTCGACACACACAAACACACGCCCAACAGTTATAAACTACTGTAACCTAGCTAGCTCCTCTCCCTCGATCTTC ATCGTCTCTCTCTCACTCATCACAAATCCCAATTCTCAACCACTTGCTTCATTAATTCAACCAATAGTTACGAGATTTGG GTTTTTTCTTCTTTTCTTCTTTTTCAAAGGAGATAATTATTTGGTTTTTCACTTTTTCTTACATGCTTGTTGTTGCTTGC TTCTTCTCAAAACCCTATTCCTTCATCTTCAAACCTAACAACGGATCAGGTTTTCTGATATGGATTTCGAGTTAAAATTG AAGGCTGGGTCAGGTTTAACAAAATGGCTGGGTTGTTCTCATTAGGAGGAGGAGGAGGAAGAGGGAACCAGGAGGGGGAA CATCACGGCGGTGAGATTCCCCCACCGGAAACCCTATTCTGGTACAAACCAAACGACGATGTTTCGTCGTATCGCGGCTT CGAGCTATGGAACCAGCACCAGCAGCAACAGCACCAGCAACAACAGGAAGTAGTTGGAGGAGCAGGGTTAAGGCCTCTCT ACTCGGCGGTTGGGGTGGGATCCAGCAGCAGGGTGGTGGTGGGGTCAGATGATCAGAGATCATCGGCGGCGGCGGTGGGG TTTGTGAGGGCGTCGTCGTCGGGGGAGGGAGGAGGGATAAGCTGCCAGGACTGCGGGAACCAAGCGAAGAAGGATTGTCC TCACATGCGGTGCAGGACGTGTTGCAAGAGCCGAGGGTTCGATTGCCAGACGCACGTGAAGAGCACGTGGGTCCCCGCCG CCAAACGCCGTGAACGCCAGCAACAGCTCAACCCTGGTTTCCACAGAACAGACATTTCCAAACGCCCCAGAGATATCATC ACTTCTCGTAATAACCAGCAGCTGCACTCTTCTTCAGGTAATATAACAACACTCACTCACTTACTTTCACATATGATTAT GCTCTTCTTCTTCTTCTCTTCTCTCATGTATTCTTCTATTTTCTTCTGTTTTGTTGTTTTTTTGTGTCTGTGTTGTTTTG TCTTTGTTTTGGTCTGCTATAGAATCAGAAGCACTCGCAGTTTCCGTGATTGACTCTTTGGAGTGTAGAGTGTGGGTGAA ATAATAAAGGACGGGAATATTAATAATTTAAAACAAAAAACATGAGAATCTTTTGGGTGAATGAGTGAGTGAGTGAGGGG AATGAATTATATTCATCACTGAAAAGAAAGATGAGAAAGTTTTGGAAGTATATCTGCAAACAAGGGAACCGTATCTATTG CGTGTGAATCAAAATCCAACCATCTTCGTATATTACCAGCTTTTCTTTTTTCTTTTTTCTTTTCCTTTACCAAATACACT GTTATTTAGTAGCCCTGACGAATGGATTCACAGGGAAGAAACTGTGTGTTGTGTGTGTCTCTAGATGCACTCATCGATCT CCTCTTTCTTAGCACATTCTCTTTCTCTTTCTCTTTCACATCCACACATTCACATTCACTAACTCCACTTTGGTTAAACA TTATTTAATTTTATTTAGTAGACATTATTCTTCTAGTATCAAATGATTAAATGTAGAAAATGTCTAATGGCTTTTGGTTT TCTCTTCTACTTGTTGACAAAAAAAGGGTTAGAGCATGGAAATTTTCCGGCATTGGTGAGTTCTCCGGCAGAGTTCAGGT GTGTGAGGGTTAGCTGCGTGGACGATGCTGATGACAGGTACGCATATCAAACGGCTGTCAACATAGGAGGGCATGTCTTC AAAGGAATCCTCTATGACTATGGTCCAGACAACAACAACAATAATACTAGTCATGATAACAACATGAATGTTCATAATTA CATGGCTGGGGATACCTCCCCCGCCGCTCTTGCCGGAGCTCAGCCGCTGAATCTCACCGCCGCTGTCACCGTTGTTTCGT CTTCTGGGGCACTTGTTGATCCTTCCTCCTTGTATCCATCTCCGGTTAACGCCTTCATGACAGGTAGTGGTACGCAATTC TTCCCTCGCACAAGATCTTGAAAAAAAGAAAAAAGAAAAGTTATGGAAATTGGCGTATATTTATTCGCCGCTACTTTTAT TTCATCATGAACTTGGTGTTTGGTTCATTTGATGAAATATTATTATTGTCATGGCCTAGTGGTAAATTTGACTTTGACAC CCATATTTTGTGTGAAGTATATGAGCTAAAGAGAAAGAAAAGAAAGGAAAGAACGAGAGAGAAAGAAAATATTTTTGTGC AAAATTTCAAATGCTTAGTTCAAGAATAGATCATTCTTCTTATCCTTCTTGAAAACTAGCTAAGCCTATATTTGTGACTT TGTATGTACGAAACAATGGGACATTATGGTTCTAATGTTGTAGCTTAGAGTGTAGAGTCTCAGCTTAACTGTTTCATTAA TTATTACTTTATCGAGATTCTAATCATTCTCTTCGAGTCCCTCATTGTTGAATCATGTCACACTTTAGTTCTTGTTGTTG GATTTTTAATTGCTTTTTTTCCCTGTTTACCGTGTGTGCTTGCTGGGTTGGAATTGAACTGGAAACACTAAAGTTTTGAT CCTTATTTGGATTGGGCTAACCCTCCAAGTGAACTTGATTCTTTCTTCCATATTTCGGAACATTGAAAGGTGAAAGATCC CTCTCTCTTCTTATTCTTCGCATGTGATGATACTGTAATTCCATTGCATCTAACTTTGCATAGATGTGACGTTGAATTAA AACGGGAAATATTGCTTATCAATGTGCTCATATTTAATGCACATGCAGGAAAAATATACGTATATAGGGAACACTGCATT TTATACCTAAGAGTATAACATATGGTATATATACAAGAAGAGAGTTAGTTGCTTGATGATCAAAGAAGACTAAAACAAGT AAAACCATAATAAAGGCTATCATTTCTGAACTTTCCTTAACTACGGTTTGTTCATGATATCTGTGCATACTGAGACATGT TTAATCACACATGGTGTCAATATGTACCTTTTTCTATACATTCTAGGACACAATTTACATAATTTATAGATACTACTATT ATACTTGCTCCAAAGTCAAAGCCTTTAAATATTGTCACCCACATATTGTTTGAGTATATGAATATTTCAATTTAAAAAGA ATCTTGCAGATTTTGAGTATCGACCTTGGGGACATAAGAGAGAATAATGAGTTTTGATTTATTCACACGCTAATTTTAGT CTACTTTCCATTTTCATGGCGTACTTTTTGTTTTCTATTTTTCTATGGTTTTCATATCACATACCTATTATATTTCTCAT TTTTCTTTAATTATTTTCTTCCTAGCAGTGAATGGAATTGAGTGTTAATGAAATATTGTAGGGGGAAAATAAGGTGAGAG ATAAAAATATCCAAATTATTTAGGATATGGAATATGTGTTTTTTTGGTAATAAGGTGTTTATTCCTATGTAGTTGTCTCT TCACTACATATGAAGGGTAAAGGCATGGTTATAAGTTAGGAGCCCAGCTGGCAAAAATAATTGTGTATACTTTTTACATT TGACTCCAGATCATGAGATGTTTCTGTTTGGAGTTGACTAGTTATGTATCATATATGACTAGTTATGCTTTGTCGATTTG ACACTTCATGTTTAGGTCTCATGAAGTTAATTAAAATTTGATAGTTACTTCTATGTATTCAATACATGAGTTCTTACTTA TTCTATCCATTAGTTTAATGTCTAAATTCATGCATAAAAATAAACTGGTAAAAATAATTACTCAAGTCTCCAAAGAGCCA AGGTTTGCCTTGATGATTTAATTAGTCCTAAATGATTTGAATAAATACTGAAGTCTCCAAAGAGCGCATGATGATGTCAG AACTTAAAATACTTATATAGGATAGTATATTGTAGAATGATTGCTTCCATGTCTGTATGCAGAAGGGTGATCTAACAATA GAATCTATCGGTTCGGACATTATCTGCATGGAGTATGATTAAACAAAAACATTTTTTTCACACCTGATTTATTTACATTC AATTATTTTATGAATATAAAGGGATAGAGAACCCCTTTTGATCCATATAAAAAAAAAGCTGTAGGGGTAGGAGTGTAAAG AAATGAACTGTGAAAAAAATGGAAGTTTATGATAAACTATGAGGAATATAGCCCTAATATATATATACTTCATTTGGATG TGAACATGTTGAGTATTTTTTTGTGTGTAGTCAATAGATAGATACAATAAGGCAATATTTGGTGGCCTTTGAGCATTTCA TCCGAGATCATGATATGCATTGAATTTAATAATTATTATGTTTGGAAAAATAATTGGCAGAATATTTCATGAAGATATAT TTGTTACCATACATGTTTGATCATGTCATTCATGATGTCCTATCCAATTTGAGTTATGTGATCCTGGGTCAACAATTTTT TTCATGAACCACTCAAAATGTCATCATTTATAAGTTGCTAAATTGTGCATCTGGCTTAAAGATGTAATGATAAAAATCTT ATATAATTGCCTGCTTGTTCATGTTCCAGTCTTGTTTCCAATTTCTGAAAATTAAATAAAATCTCCTTACTATAGTTATA GGTGCCTTAGGATAAATTTAGATAAATTTTTCTAGCTTGTTCTCTTTTTTTTCTTATTTACAAGATGCACCCAATTAAGT TGATTTTATTTTTTTTAATTAATATAATTACCCCAAAAAATTGTAGGCATTATTTGAATTCATTTTCAAATGAAAAGGCA TATAAATAAATGAATGGTCAATAAAATTTGGTTATTTATCTACTCTTACATGTTTTTAATACGGGGTTGTCTAAATGACC CATGATAAAGTTTGGGTTAAATAACC
CDS sequence (LotjaGi4g1v0123100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGGTTGTTCTCATTAGGAGGAGGAGGAGGAAGAGGGAACCAGGAGGGGGAACATCACGGCGGTGAGATTCCCCC ACCGGAAACCCTATTCTGGTACAAACCAAACGACGATGTTTCGTCGTATCGCGGCTTCGAGCTATGGAACCAGCACCAGC AGCAACAGCACCAGCAACAACAGGAAGTAGTTGGAGGAGCAGGGTTAAGGCCTCTCTACTCGGCGGTTGGGGTGGGATCC AGCAGCAGGGTGGTGGTGGGGTCAGATGATCAGAGATCATCGGCGGCGGCGGTGGGGTTTGTGAGGGCGTCGTCGTCGGG GGAGGGAGGAGGGATAAGCTGCCAGGACTGCGGGAACCAAGCGAAGAAGGATTGTCCTCACATGCGGTGCAGGACGTGTT GCAAGAGCCGAGGGTTCGATTGCCAGACGCACGTGAAGAGCACGTGGGTCCCCGCCGCCAAACGCCGTGAACGCCAGCAA CAGCTCAACCCTGGTTTCCACAGAACAGACATTTCCAAACGCCCCAGAGATATCATCACTTCTCGTAATAACCAGCAGCT GCACTCTTCTTCAGGGTTAGAGCATGGAAATTTTCCGGCATTGGTGAGTTCTCCGGCAGAGTTCAGGTGTGTGAGGGTTA GCTGCGTGGACGATGCTGATGACAGGTACGCATATCAAACGGCTGTCAACATAGGAGGGCATGTCTTCAAAGGAATCCTC TATGACTATGGTCCAGACAACAACAACAATAATACTAGTCATGATAACAACATGAATGTTCATAATTACATGGCTGGGGA TACCTCCCCCGCCGCTCTTGCCGGAGCTCAGCCGCTGAATCTCACCGCCGCTGTCACCGTTGTTTCGTCTTCTGGGGCAC TTGTTGATCCTTCCTCCTTGTATCCATCTCCGGTTAACGCCTTCATGACAGGTAGTGGTACGCAATTCTTCCCTCGCACA AGATCTTGA
Protein sequence (LotjaGi4g1v0123100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGLFSLGGGGGRGNQEGEHHGGEIPPPETLFWYKPNDDVSSYRGFELWNQHQQQQHQQQQEVVGGAGLRPLYSAVGVGS SSRVVVGSDDQRSSAAAVGFVRASSSGEGGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQQ QLNPGFHRTDISKRPRDIITSRNNQQLHSSSGLEHGNFPALVSSPAEFRCVRVSCVDDADDRYAYQTAVNIGGHVFKGIL YDYGPDNNNNNTSHDNNMNVHNYMAGDTSPAALAGAQPLNLTAAVTVVSSSGALVDPSSLYPSPVNAFMTGSGTQFFPRT RS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 30 | 30 | - | – | |
| PANTHER | 1 | 322 | 322 | 9.4E-143 | – | |
| PANTHER | 1 | 322 | 322 | 9.4E-143 | ||
| Pfam | 111 | 246 | 136 | 1.3E-60 | – | |
| TIGRFAM | 113 | 155 | 43 | 8.3E-28 | ||
| TIGRFAM | 198 | 245 | 48 | 1.4E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0123100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…