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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0126300 |
| Transcript ID | LotjaGi4g1v0126300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Disease resistance protein (TIR-NBS-LRR class); TAIR: AT4G16990.1 disease resistance protein (TIR-NBS class); Swiss-Prot: sp|Q40392|TMVRN_NICGU TMV resistance protein N; TrEMBL-Plants: tr|A0A0B2Q2N8|A0A0B2Q2N8_GLYSO TMV resistance protein N; Found in the gene: LotjaGi4g1v0126300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18457996..18464037) extracted from Lotus japonicus Gifu genome v1.2.
CTTTTATATGGCGTGTTTGGATAGTTTTTTTTTTTTTTTTTTTAAATAGTGTTTGGATAGTTATTTATTCTTTACAATAG AAAAAAAGGTTTAAATGTTTTTAATTGGGCTATAACCGTCCCTGAACTTTGAGTGAGATTTGAAAACCGCCTCTCGTCGG AAAATTATCTGAAAACCATCTCAAACTTTCAAAAACAAATTGGACCCGTCCCTCCGACCACCATAGCTCCGGCAATTCCC TTATGTGGTATTCCACGTCATTCATTTAATGAGATGACGTGTATTTTTTTTTAAATTAATATTTCCTAATTTTTATTCCT AAATCCCTAACCCCTTCTCTTAACCTAAATCCCTAAATTTGATCCCCTTTTTCCCCAATTCATAAGGTTAGGGTTCAACA TTCATCTTCTTCCTCTTCTTCTCAGTTCTTCTTCTTCTTCTCCCATCGTTTTCTTCTTCCTCTTCTTCTCCGTTCTTCCT GCAGCATTGGGAACGAAGACAGCAAGGACCCAACAGGCAAAACCAGAACGGCTAATCAGTCTTAAGCTCAGCTTCTTCCA TCTCACTTTTTCTTTCTCTCACAAACGCTCTCTTGCTCTCCAACTCCTGCAAATCCACCGGTTAACTCTTTCCCCAATTC ACCAAACCCTAAATCGCCATAATAGATCTACGCAAAGCTAGAACGTGGAAGCACACCCACGATCCAACCATAACCAATAC CTTCCTGTTTAATTTGACGGAGCATGCAGATCTGGTTTATTGTTGTGAATATCTTCCTGTTTGCTGGTGCGCAGATCTAG TTTCCTATTGATTGTTTCTTTTTTGGATTTTGTACAAATTGGGGTTCTTTTTTTCCATTGTGTTTAGTTCATATGTAAAT TTCTTGTTCCCTTGATAATGAATTAGTCCCCTCAGTTCTTGTTTACCTTGGACGTTTTTATTCTTGTTCTCAATTTTAGA TTATTTATTTCCCAACTAATAATTGTTATTTTGGTTTTTATTCCCTGGGATTTTAGATGAAGAAGATATCAAGAAGATGA ATATGCACAATCTTCTCAATTTTGTTTTTATTTTTTTATTAATTAATAAAGACTTAAATTAATTTTTTTTATAAAAATAC ACGTCATCTCATTAAATGACGTGGAATGCCACATAATGGGATTGCCGGAGCTATGGTGGCCAGAGGGACGGGTCCAATTT GTTTTTGAAAGTTTGAGGATGGTTTTCAGATAATTTTTCGGTGAGGGACGGTTTTCAAATCTCGCTCAAAGTTCAGGGAC TGTTATAGTTTTTAACCCTTTTTAATTTGATACTTACACTGACAATTGAAAAAAAAATCATTGTTTTATTTATGTTTAAT TTCAATTGTTATATTTTTTAAATAATCATATTTCAGTTAGTGAGAGCATCAATATCAAAATAAAAAGGCAATTTTGAGTA CTGATATTTATTAAAAAAATAAGGGTTGAAATTGTCTTTATTTGATATTGACACTGTAAGAGATTGAAACATGTTCAGTT AAAAAATGCATAGACTTAAGTGAAAAAGAGTAACTAGAAGTAATAATTTTTTCACTAATGCAAGTATAAACACAAATTTA AGCTATAAAACAATTTACAGAACAATTTTTATATATTGAGTTAAAAATACAATAGTGTTTGGTACATTAAAATGGTTCAG ATTTGAATTTAGCAAGTATATATGACATATGATAAGGAAGACCCGGATAAAGACAAAAAAAGATTTTGTGGATGTCGATA TTGTTTTGTGGTTACTCTCATTTGTTCTCACAAGGTGATTCTTTTCATTTCATTTTTGTTTATATACATCTATCTATTAA GGAACTTCCAAGTTCATCACCAGCTTCTTCATTTGTAATATCTAGCTACCACCCTGAATCACCCATGGCATCCATTGTTC CTCCTCCTCCATTGACCCCCGTGATCTCTCACCAAATCTATGACGTTTTCCTTAGCTTCAGGGGAGAGGACACTAGATAT TCCTTCACAAGCCATATATATGCTGCACTAACAAGGCTTCAAGTCAAGACTTACATTGACAACGAGCTTGAGAGAGGTAA TGAAATCTCACCCTCGCTCCTCAAAGCTATTGATGATGCAAAAGTGTCTGTGATCGTATTCTCAGAAAACTATGCTTCTT CTAAGTGGTGTTTGGAGGAACTCGTGAGAATTGTGGAGTGTAAGAAAAACAATGGGCAGATTGTGGTGCCTATTTTCTAC CATATTGATCCAACTCATGTGAGGAATCAGACTGCTAGCTATGCTCGTGCTTTTGAGGCGCATGAAAAGCGTTTTGTGAA TGACATGAGCAAGGTTCAATCATGGCGGATTGCTTTGGCTGAAGCAGCCAATATCTCTGGGTGGGATTGCTTGGGTACAA GGTAAATATTCACCTTCATTACATTTTTTGTTGACACCAGAGTATACACCACCAACAGTAGTGACCGCGGTCATCTCGCC AACATGGGCTAGCATTTTGCGGTAAACGACTAGCCACAAAATGTGTTTTATCTGCATTTAAATAAGTTGAACCAAATTGT CATTTTTCATTGAAATTTTAGTACAATACAACATGAAGAAGTTACCTAGAAGGCTAGAATTTGAGTGGCTTGTATGGTTA AGTACAACCCAAAGTTAACAAAAAATAAAAGAAGGTAGTAACATCGAGCAAAAAATGCAGTTCTTATAAGATTTTTTTCC CATATTGATCTGCTTATTCAGCCATTTGTTCAAAGTTTCTGTCTTTCCTTTCCTTTCTCAAGTAGCTTTTGTTCCAATTC CTTCTTCTTATCCATCTGAGTCAATGACAAGCTGTTGATAAAGAATAAATTCCTTCCCTTCTTATTCACATGCAGTGGCG GATCCAGGACCCTAGGGTCAGGGCGGTCAAATTTTTCAAATGAACACATCAATAAAAATATAATTAAAAACAATTGTAAT ATGTTTATACGAAATTATACATATCATAGTTGTCCTTTACGTTTTTTTTTTTTGATAAGCCATATTGATAAATTAAAAAG GCACAAGGGGTGCCACCCAAGGTACACAGAAAGAAAAGAGAAAGGAGAAACTACAAACAAAAGTCAAAAATAGAAGAGTA TTACAAAAACAGAGGAAACAGGGGAAAACTAAATGGGATCAGCTTTAAAACTAAAGCCCCCAAAAGCATCCCTTCAAATT AGATACTTGCTATCAAGTTGTCCTGCCTTTGCTCTAGAATTTCCAGCACCGAATGTCCCCAATCATAATCAGGCCCTTGC ACATAAAGCCAATTCAATCCCAATATCACAACAGTATAAGTATGTGTATGTATCAAACCGATTGGAGGCATAGGATAGGT TGTGATTGCCATTCATACATTGAAAAGTGGAAGTCCTTTCCCTTTGCAGATAACCATTGCCAAACCTTAAGCTGTGCTTT ATCAAAGATTGAGTCCTCTTGCAGTGAAAACAATCCAATTTCTATGTTCCCACAAAGCCCAAGCCATTGCTATAATCAAC ATATAAAGCTTTCCTATGCTCAAAGCAAACAGACAAAATAACATAATTTTCCTACACTTGAAGACCAAATTAATATTTAC CATAACAGATCAATCATCAATTATTTACCCAATTCCTCACTCTTTGTCTCTGGTTTCTTTTTTAGTAATTTTGTGCAGTA ATTGTTTTTTCTTTCTTTCAAGTTCCACACATTGAAAGTGTATGCTTTGTAAATTTTAAATACATCTAAATCTAATGTAT GTGGGACTTAGTAATAGTAGCCCAACCTCCTGCAGTCCCACAAACCGCCCCAAAAGCCTCCTCAACTTGCTTGATCTGCA CTATTTCTTTGTTTGATAAAGTAACCCCACCACACAACCAGAAGTTATGGTCAAAAAACGCACTAACAGCACCATACGCA CACACACGGTACCACAGTAAAAAAAATACATAAAACTAGAGAGAAAAAACAGATTGTGCAGACTGCAGTGCATAGGAGAA GATTAGAAGCTTTAGAAATTAGGGAAAACAGATTTGCCATTTAGGGTTAGGGAAAAATCAGCCATACCTTTAGAAATTAG AACCCCAGAGCCAGACCAGAGGGCAGAGGCACAGTGAGGCACGGCTGGACAGTGGTGCCGTGGTGGTGGTGCGCCGTGCG TGTTGATGACCCAGACGGCCAGACCTAGGTGAGACCGTGAGAGTGCTTGAGAAATCAAAGCGTAACTCGTGAGAGGTGAG AGAGATCTGACTATGTGAGTGTGTGTGAGAGAGAAGTTGGGGTCTAGGGGTGCAAATGTAAAATCTCAGGGGGTTCAAAA AAGATATATTATAGGGGGGTAAGTAGAATTTTTTTGTTTTTCAGGGGGTTCAACTGAACCCCTGGGCTCTATGTGGGTCC GCCCCTGTTCACATGTCCTGCTTGGGCCAATCTTAAGGTATAAAAAGATAATTGAAAAGCTGTCACTTAGGCACAACTTT TCAACATATATAAAGTTCACAGCTAGAAATGATCAACAAATATGAACTATCAATTATTTTGTAGAAATAACATATAGAAA TGGTAAAATGAACATTGATCCATAAATGGCGGCAATTCTATCTTCATTAGAGATCAAAGCAAAGGTAAGTAAATATCATA TTTTTCTTTTCCTAGCAAAGGGAATTCTTCAGCAGGAGACTCTTGCAAGTTGCAAGTTGCAAGTTGCAAGGGAACTCAGT GTTTTTCTTTCTTGTTTCTCTTGTTGGATGACAGCAAGAGAAACATACCAAGTTTAACTAAAACTCAGCAACTGTGCTGC TACACATAAAACACCTCACAGCATTAATGTTTCATCCTAGATCAAGTTGTAACATATCATTTTGGCAGTTATTTTACAAC CTTTTGCCACCATAAAGAACACATTTTCAAAAAAAATTACTCTGTTCAAAAATTACTCATGACCAATAATTTTTTCTATT TCCTAATTATGATATTGCACTCATTACGAGTCCTCTAAAATTTTTAGTGACAGTACCTAATTCTTCAAAAATCCAAAAGA AATTCATAACTACTAACTAGTCTTCAAAAAGCATTAGCTTTGAAGTGGATTTCAAACAGACATCACTGAGGTAAAATTTA ACATCAGATAGTTACCAATTAGTTAAAGATTTGATATTGAATTGTTTTCATCTCTGTTTCCTTACAATCTTGATATCATT CATGAGATGTTATATATCTTTTTTTTTCTTTTCCTCTTATATATGTTCAATAAATGAACAGGATGGAGTCTGAACTAGTT GATCAAATTGCTTTGGATATATTGCAAAAGTTGGACTCTATAACAAGCGGGGGCCTAGAAAGACGCATCGATACGTACCG GCAAATCGCGCGACAAAAGCTAGAGAAGTCATTGAGGACAGGTACTCTTAAGGACATGGATGAATTGATCTCAGCATTGC ACCAACTTGCAGAGATCAAATTGGAGAAAGCTATGAGATCAGATGAATTAAGTGCTTGGGAGGACCTTATGGCCACATAT CAAAGACTCTTGCAGGTTAAAGTTGACAAGTATTTTCGTACTACTAATCAGAAAGATTTGGAAGATATACAGGTTACAGA GCAGCATATTCACTATATTCAGAGGGAGCAATCCAATCGTATGGAGGGGTTCCTCGGTATATAGACACCGAGACATGAAG AAGAATAATCCATTTCTGTTTGACCTTAATCATGTATACTATTTCGTTGCAGTGTGACATGATGAACCTTATAAATGCTC TTTTCATCAACAAACACCCTTTTTGATGATTTACAATCTTGAACTAGCAAAATATTATCTTAACATTTTTGTTGGTACCA AAGTTTAAGAAATCATAGGAGAGGAAGTTTGCTGATTTTGGAAAAGCTAGCACAACGTAACTGGTGCATTATGATTTATG GTTCATATCCAAATAGTCGATGGTGATCTAGCTTAAGAAGCAAGCTGATCAGGAAGAGATTTTCAGGATTGCTTTTTAGG ATTAGGGCATACATATAACTTAGGATTAAAAATTTAAAATGC
CDS sequence (LotjaGi4g1v0126300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATATTGTTTTGTGGTTACTCTCATTTGTTCTCACAAGGTGATTCTTTTCATTTCATTTTTGTTTATATACATCT ATCTATTAAGGAACTTCCAAGTTCATCACCAGCTTCTTCATTTGTAATATCTAGCTACCACCCTGAATCACCCATGGCAT CCATTGTTCCTCCTCCTCCATTGACCCCCGTGATCTCTCACCAAATCTATGACGTTTTCCTTAGCTTCAGGGGAGAGGAC ACTAGATATTCCTTCACAAGCCATATATATGCTGCACTAACAAGGCTTCAAGTCAAGACTTACATTGACAACGAGCTTGA GAGAGGTAATGAAATCTCACCCTCGCTCCTCAAAGCTATTGATGATGCAAAAGTGTCTGTGATCGTATTCTCAGAAAACT ATGCTTCTTCTAAGTGGTGTTTGGAGGAACTCGTGAGAATTGTGGAGTGTAAGAAAAACAATGGGCAGATTGTGGTGCCT ATTTTCTACCATATTGATCCAACTCATGTGAGGAATCAGACTGCTAGCTATGCTCGTGCTTTTGAGGCGCATGAAAAGCG TTTTGTGAATGACATGAGCAAGGTTCAATCATGGCGGATTGCTTTGGCTGAAGCAGCCAATATCTCTGGGTGGGATTGCT TGGGTACAAGGATGGAGTCTGAACTAGTTGATCAAATTGCTTTGGATATATTGCAAAAGTTGGACTCTATAACAAGCGGG GGCCTAGAAAGACGCATCGATACGTACCGGCAAATCGCGCGACAAAAGCTAGAGAAGTCATTGAGGACAGGTACTCTTAA GGACATGGATGAATTGATCTCAGCATTGCACCAACTTGCAGAGATCAAATTGGAGAAAGCTATGAGATCAGATGAATTAA GTGCTTGGGAGGACCTTATGGCCACATATCAAAGACTCTTGCAGGTTAAAGTTGACAAGTATTTTCGTACTACTAATCAG AAAGATTTGGAAGATATACAGGTTACAGAGCAGCATATTCACTATATTCAGAGGGAGCAATCCAATCGTATGGAGGGGTT CCTCGGTATATAG
Protein sequence (LotjaGi4g1v0126300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSILFCGYSHLFSQGDSFHFIFVYIHLSIKELPSSSPASSFVISSYHPESPMASIVPPPPLTPVISHQIYDVFLSFRGED TRYSFTSHIYAALTRLQVKTYIDNELERGNEISPSLLKAIDDAKVSVIVFSENYASSKWCLEELVRIVECKKNNGQIVVP IFYHIDPTHVRNQTASYARAFEAHEKRFVNDMSKVQSWRIALAEAANISGWDCLGTRMESELVDQIALDILQKLDSITSG GLERRIDTYRQIARQKLEKSLRTGTLKDMDELISALHQLAEIKLEKAMRSDELSAWEDLMATYQRLLQVKVDKYFRTTNQ KDLEDIQVTEQHIHYIQREQSNRMEGFLGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 65 | 239 | 175 | 3.4E-67 | ||
| PANTHER | 66 | 293 | 228 | 6.0E-94 | – | |
| PANTHER | 66 | 293 | 228 | 6.0E-94 | – | |
| SUPERFAMILY | 66 | 211 | 146 | 3.01E-40 | ||
| ProSiteProfiles | 68 | 208 | 141 | 29.772 | ||
| SMART | 69 | 208 | 140 | 1.0E-43 | ||
| Pfam | 70 | 239 | 170 | 5.4E-46 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Signal transduction | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. |
Expression pattern of LotjaGi4g1v0126300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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