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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0126600 |
| Transcript ID | LotjaGi4g1v0126600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidyl-prolyl cis-trans isomerase; TAIR: AT2G18040.1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1; Swiss-Prot: sp|Q94G00|PIN1_MALDO Peptidyl-prolyl cis-trans isomerase Pin1; TrEMBL-Plants: tr|A7DX09|A7DX09_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi4g1v0126600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18491773..18494010) extracted from Lotus japonicus Gifu genome v1.2.
AAGAAGAAATCGAAGATGTCGTCGTCGTCTTCCAGCGGTGAGGTTAGGGCTTCACACATACTGATAAAGCACCAAGGTTC TAGAAGGAAAGCCTCATGGAAGGATCCAGAAGGCCGTGTCATCAAGAACACCACCAGAGAAAGCGCCGTCGCTCAGCTCA GTACCCTCCGTGAGGACATCCTTTCCGGCAAGGCTAACTTCGAAGATGTCGCCTCTCGCATCTCCGATTGCAGCTCTGCC AAGCGCGGCGGCGATCTTGGTCTGTACTCATGAAACTCTTGATTTTTTAGTTTATTGCATTTTTCTTCGTAATATTTGAT GTTTATATTTGAAATTTTTCATTCATTTCATGAATTGTTTTGTAGTTAACACTTCTTAGAGTTCGATTGTAGTGTTGTTG AACTGGATTTTGTAACAATAGTTTGAACCATGGGGAAATCCAGTGAGTTAGTTAGTAGTTATTGAATTATTGTTGTTGAT TGTGAGTATTTATGAGAATCTAAGCTAATTAGGTGATTTTGGTGACCAAAATCATGATAAGGACTCTTGCTGTAGGCAGG ATCTGCTTAGTGTAACTAAACAGAACAAGAACTATGGACCCTGATTATTACTGTGCCTTTGCATTCACTAGCTCTAGTTT AAATAGTGTTAGAAGAATATGTCCATCATTGAGATTGTATAAGAATATTAATTTAGCTGCAGATGTAACGCTTGTTTATG GTTTAACAGTGCATCAAATTTAACACTATAACTTTCAATGATATTCTCCTCGTTAATGTTTTAACTGTGGTGGCTTCATA GGAACTCCCTATATTACATGATTAAAGCTCACTTTTTAATTTTTATTCACATCTTCACTGAGACATTATGTTTGTGTTTC TTTCGTTTTTTATATGAAATCCCTCCATATCACTCCTAATGTATTGAATACATATCACCTATATTAGATCTCTCTTCTGA ATGGGGATGAAGTCAATGTGACTTTTACCAGTTTGTCATGGTAGATTGGTTTGATTATTATCTTCAAAAACGGGTGAGAG GAAGTGTGTTAACTCGAGTATCCCTTGAGCTTTTGTTAATAATTTTCTAACGTAATTAAAATTCGGGTCAAATATTTTTT TTTATCCTGGAAATAATAGTATTTTTGTCATTTTAATCCTTATTCAAATTTTATTCATTGGCAGTCCCTGCTTTTAACAA ATACATTGTTGTTTTGTTATTACATGGGGCCTAGACCCAAAGTAAAAACAGCAAACTCAAGGAGTAAGTGGCAGAATGGC TATGCCCTCATGCAGGGTGTGAAAGAAAGAACCAGGGGGAAGGGACCAGAACAATTATAAGAATCCATCTTGATCATGGT CTAGGTTTACCATTGTGCTTTTAGTTCGTTACCAAAAACTAAAAAATATATCATTTTTGCAGTTTTAAGCATTAAACAGA AAAAAACTAGATAAGGATTAAAATCAAAATTTGTTAATTTCATAAGGACAAAACCCATGTTGAGCCCTTAAAATTTAAAT TTTGCATTTCCTATCATTCTTCCTGTTTCACTCTTGAATAAAAAGGTTATCTGAATAACACATATTTTATGTCAATGTAT CGTTTGGAAGAGTTCATTTGAGCTTATCATATAGTATTAGTGCTTATACAAATGTATGAGAGAGCTTATGTAAGTAACTT ATGATTAATTATTTATGCGTTAAGCGCATATATCAGCGGTTAATTATGCTGATTACCCAAACTCACCTTTATTATAATTG GAAGAACTGAAGGATGCTATTCATACAAGAAGCTTTCTTTCAAGTTTGTATAAATGGGTTTCGATCTGATGTAGTGATGG TGTATTTGTTTGGCTTCTTGATATTTACTGTGGTCTCATGGTAGTTAGCTTTAGCTAGCGGCAGGTGAATAAAATATTGC TAAAATGTGTTTTAAACTGCTTTGTCACATGTGCCAATCAATAGAACTGATGTTTCAATCTGCTTAATGATGCTTATCTT GTTATGATGGTAGAAGTGTATGCATATCTGAAGTGAATTATATCCCTAAATTCCGCTCCTGTAAGTTAAACATAATTTAC CAGTTACACTGAAAGTGTGTTTCTTGGGTGTAGGTCCTTTTGGTCGTGGCCAGATGCAGAAGCCTTTTGAAGAAGCAACT TTTGCTCTTAAAGTTGGAGATATTAGTGAAATTGTGGATACTGACAGTGGCGTCCACATTATTAAGAGAACCAAATAA
CDS sequence (LotjaGi4g1v0126600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGTCGTCGTCTTCCAGCGGTGAGGTTAGGGCTTCACACATACTGATAAAGCACCAAGGTTCTAGAAGGAAAGCCTC ATGGAAGGATCCAGAAGGCCGTGTCATCAAGAACACCACCAGAGAAAGCGCCGTCGCTCAGCTCAGTACCCTCCGTGAGG ACATCCTTTCCGGCAAGGCTAACTTCGAAGATGTCGCCTCTCGCATCTCCGATTGCAGCTCTGCCAAGCGCGGCGGCGAT CTTGGTCCTTTTGGTCGTGGCCAGATGCAGAAGCCTTTTGAAGAAGCAACTTTTGCTCTTAAAGTTGGAGATATTAGTGA AATTGTGGATACTGACAGTGGCGTCCACATTATTAAGAGAACCAAATAA
Protein sequence (LotjaGi4g1v0126600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSSSSSGEVRASHILIKHQGSRRKASWKDPEGRVIKNTTRESAVAQLSTLREDILSGKANFEDVASRISDCSSAKRGGD LGPFGRGQMQKPFEEATFALKVGDISEIVDTDSGVHIIKRTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 2 | 122 | 121 | 7.0E-71 | – | |
| PANTHER | 2 | 122 | 121 | 7.0E-71 | – | |
| Gene3D | 4 | 122 | 119 | 1.2E-49 | – | |
| ProSiteProfiles | 7 | 122 | 116 | 28.714 | ||
| SUPERFAMILY | 8 | 121 | 114 | 2.75E-34 | – | |
| Pfam | 14 | 121 | 108 | 5.0E-25 | ||
| ProSitePatterns | 62 | 82 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). |
Expression pattern of LotjaGi4g1v0126600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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