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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0127600 |
| Transcript ID | LotjaGi4g1v0127600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gibberellin-regulated protein 2; TAIR: AT1G75750.1 GAST1 protein homolog 1; Swiss-Prot: sp|Q93X17|SNAK2_SOLTU Snakin-2; TrEMBL-Plants: tr|G7LC52|G7LC52_MEDTR Gibberellin-regulated family protein; Found in the gene: LotjaGi4g1v0127600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18601107..18602862) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTGACATCCAATATTTATATAATCTATTTTTGAAAGCATATATCTCACTCTTTTTCTACCTATAAATACTTGTTATC TTCTTTCTCATTTCATTCAAAATATAGTAGTGGACATTGTATCCAAACTTTGTTTGTTCTATACACTTGTTCACCTCTAT CGAATCCTCTGCTCTGTTATGGCGTTCTCAAGAACTTTCACTGCCACATCACTTCTCCTCTCCCTTGTCCTTCTTCATAT GGCAGAAGCACACCAAACGGTAGAGTTTGCTTTCTCTGATCTGTCCTTCTAATTATAACTAATTAGTTACTGAACTTATA GCATATATTGATAGTTGTCTACACAATTAAAATAGGTGCTCTAAGGTAAATAAGCTTGTAACTTTATAGTAGTTTGTGAT TAAAAATTGTGTAACTTACCGTAAACTCTCTAATAAGTTTGTCGCTAGAAAACTTACCAATTAGTCAAATTAAAGTAGTG TATCGTACACTACATAGTTAACTTGTGTATTTGAGTGTCCGGTGCACAAAGCTACTACATGCTAGTAAGGCTTTCGATCA TTTAATTTAGTTTTTTGCATGCAGTCTCACCTTATTTTTTACAAGAGACTATTTCCACCTTTTTAGACTTGAACTAGTTT TTTTTTTATAAGCTTTAGACTATTTCCACTTTTTTAGTCTAATTTATTTTTTAGAGTTGAACTCGTGATTTATAAATTTG GAGCTCAGTTACTGGTGTATTCTGCATGTTTAGAAATTCCTCTACATTGATTATAAAGTCAAAATTAATGATGGGAAAAA GATACTGTGTGTAGTATTTATCTTCTGGCTCTGGGTGTTAGAATTAATTCTGATAAAAGAGAAAAAAATTGTGTAGCTAA GTAATAAAATGAATTCCAATGAAATAGAAGTGGGTCTAACATGCAATTAGAAAACTCTTTAGGATTTATTTTCCAATTGC ACCCACATTAACCATTTTCCTTCAATTTACAGATGAGCTATGGAGCAACAACGCCAACCCCTCTTCCCCAACCAATAGGT AATGTCACAAATATCTTTACCTCATAAAATTTTTCTGGGTTATCTTTGACTTGCAATAGCTATGTGTCTCTAATTAGTTA GTTTTTAAGCACATTTTTATGCACATGCATGTATGTAGATTGTGGAGTGGCTTGTGAAGGAAGGTGCAAGCTATCATCAA GACCACGTTTGTGCAAGAGGGCTTGTGGGAGTTGCTGTGCTGTGTGCAAGTGTGTCCCTCCTGGCACTGCTGGCAACCAT GACTCCTGTCCTTGCTATGCTAAACTCACCACCCACAATAATATTCCCAAATGCCCATAATTTAATCAAGGATTGTTTGA AGTCTTGGATTAAATGCTTCTGTATTGGAGGAAATAAATGTGCTAGCTTTGGCAAATTAATTCTGAATATTAAAGAATAT TCTGGTTGTCCTTTCATTTAGGTTGTCATCACTTGCTATTTAAATTCCCAAATGGTCTAGCTTATGTAAAATGAATTCCT GTGTTGGTGCTGGGAAACAAATGTACTTTGTTTGGCAGATTAACTCTTGAGTTTTATTGAATTTTTATTCTGATTGTCAC TTTTGTTTAGGCTATTAATTTGCAGAAATATATGGCTATTCATAGTGTCATGCTATTTTGAATTTGGTTAAGTGAACGAT TGGTGGTTCAAGTAATATATATGATATGTCTAATTTCTCTTAGGTGTTTGAGTTTTGTAAATAGAAAAAATCTTTA
CDS sequence (LotjaGi4g1v0127600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTTCTCAAGAACTTTCACTGCCACATCACTTCTCCTCTCCCTTGTCCTTCTTCATATGGCAGAAGCACACCAAAC GATGAGCTATGGAGCAACAACGCCAACCCCTCTTCCCCAACCAATAGATTGTGGAGTGGCTTGTGAAGGAAGGTGCAAGC TATCATCAAGACCACGTTTGTGCAAGAGGGCTTGTGGGAGTTGCTGTGCTGTGTGCAAGTGTGTCCCTCCTGGCACTGCT GGCAACCATGACTCCTGTCCTTGCTATGCTAAACTCACCACCCACAATAATATTCCCAAATGCCCATAA
Protein sequence (LotjaGi4g1v0127600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFSRTFTATSLLLSLVLLHMAEAHQTMSYGATTPTPLPQPIDCGVACEGRCKLSSRPRLCKRACGSCCAVCKCVPPGTA GNHDSCPCYAKLTTHNNIPKCP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| PANTHER | 3 | 102 | 100 | 2.6E-45 | – | |
| PANTHER | 3 | 102 | 100 | 2.6E-45 | – | |
| Phobius | 8 | 19 | 12 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 102 | 78 | - | – | |
| Pfam | 43 | 102 | 60 | 3.4E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0127600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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