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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0128400 |
| Transcript ID | LotjaGi4g1v0128400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Armadillo repeat only; TAIR: AT5G66200.1 armadillo repeat only 2; Swiss-Prot: sp|Q59MN0|VAC8_CANAL Vacuolar protein 8; TrEMBL-Plants: tr|B7FF19|B7FF19_LOTJA ARO1-like protein 1; Found in the gene: LotjaGi4g1v0128400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18716544..18719600) extracted from Lotus japonicus Gifu genome v1.2.
AAAATCTCAAACTCAATCAAAAGCGTCAAATTTTCACCCACACCCAACCTTTTATATAACATTAAACAAGACGTAAACCG CGTTTGGTCTTCGCAAACCCCGTCCACCATGAGATTCTTCTCCTTCACACCCACCCTCAGAATCTCAATTTTCCATTTCC ATATCATGCTCCCAACCCAACCACTCTCTCAAACCCTAAATCCACACACACCATCATCATTTCTTGCTTGAATTCATTTT TTTCATTCACATGTCATTGGACCCATTTCAACTCACACACTAACAACAACAACAACAACAAAGCCAGTTCACAAAACACC TCATTTTGCATATTCTTCTCTCCCTCGAACTCGATCTAACCCGAAATTGAATCCCCAAAACGACACCACAAACCAACACA AAACGCAGAATTGAAGCCCCTTTATATACTCACTCTTGAGTCTTAGATCGGTCAATTTTCTCGCAATGGCCGCGGAAATA GTAAAACAACTGCTCGCGAAACCGATCCAATTAGCGGACCAGGTCAGCAAAGCGGCGGAGGAAGGAAGCGCGTCGTTCAA GGTGGAGTGTTTAGAATTGAAATCCAAGACGGAGAAGCTCGCCGGACTTCTCCGTCAGGCGGCGCGTGCGAGCTCCGACC TCTACGAACGCCCCACACGGCGGATCATCGGAGATACTGAACAGGTTCTGGAAAGAGCGCTGACTTTAGTCCTCAAGTGC AAGGCCAACGGCCTCATGAAGCGCGTGTTCAGCATCGTCCCCGCCGCCGCGTTCCGCAAGATGTCGTCGCATCTCGAGAA TTCAATCGGCGATGTTTCCTGGCTCCTACGTGTCTCCGCTCCCGCGGAGGAGCGCGGCGGGGAGTATCTTGGACTTCCGC CCATCGCCGCCAACGAGCCTATTTTGGGACTCATCTGGGAGCAGGTTGCGACGCTTCATACTGGCTCCCTTGATGAACGC TCCGACGCGGCGGCGTCGCTGGTGTCGCTGGTTCGCGATAACGACCGCAACGCGAATCTGATCATAGAGGAAGGTGGGGT TGGACCGTTGCTGAAGCTTATCAAGGAAGGGAAGAAGGAAGGTCAGGAGAATGCTGCTAAAGCAATTGGGCTTCTCGGCC GGGACGCGGAGAGCGTGGAGCACATGGTTCATGCTGGTGTTTGCTCGGTTTTCGGGAAGATTCTCAAGGAGGGACCGTTG AAGGTGCAAGCTGAGGTTGCCTGGGCTGTTTCTGAGCTTGCTACTAAGTACCCCAAATGCCAAGATCTCTTTGCTCAGCA TCACATTGTTCGATTGCTTGTGAGCCATCTCGCGTTTGAAACGGTTCAGGAGCATAGTAAGTACTCCATTGTTACGAAAT CGATCCACGCGGTTGTGATCGCGAGTAGCAATAACAACAACGGTTCTAACAATGAGGTGAAGAAGGAGAAGAAGGAAGAA GAGGATGAGGATGAGAAGGAGGTGAAGAGTCGGATACAGCATCCCTTGGCTGATAAGTCCCAAAATCAGATGCTTAAAGT GGTCACAAGTACAATGGCAATGCATGCTAGTTCCAACAAGAACTCCAACCAAGGCAATGAGACGACTCAAACGAGTCAAA ACTCGTCACAAACACCGGCTAAGCATAGCTATTCCTATTCTGGGATTAACATGAAGGGAAGGGAGCTTGAAGACCCTGAG GTTAAGGCTAAGATGAAAGCAATGGCAGCAAGGGCCTTGTGGTGTTTAGCCAAGGGTAACTCTTCCATTTGTCGCAGCAT AACGGAATCGAGGGCTTTGTTGTGCTTTGCCATTCTCCTTGAGAAAGGGTCTAGAGATGTCAAGTACAATTCAGCCATGG CAGTGATGGAGATCACTGAAGTGGCTGAGAAAGATCCTGAGTTGAGAAGATCAGCATTCAAGCCCAACTCTCCTGCTTGC AAAGCAGTTGTTGATCAAGTGCTCAAGATCATCGACGAAGAAGACACGGACCTCCTAATCCCCTGCCTAAAAGCTATTGG GAGTTTAGCAAGGACATTCAGAGCTACAGAGACGAGGATCATCGGTCCCTTGGTTCGGCTTCTGGATGAAAGAGAGGCAG AGGTGACAAGAGAGGCTACAATCTCCCTCATGAAATTCGCCTGCACCGAGAACTACCTCCACATTGATCACTCCAAGGCG ATTATAACTGCAGGTGGTGCAAAACACCTGGTCCAGCTGGTGTATCTTGGAGAGCACACAGTTCAAGTTCCAGCATTGTT TCTTCTCTCGTACATTGCTCTGCATGTTGCTGACAGTGAGGAGCTTGCTCGGGCTGAGGTGCTCGCAGTGCTTGAATGGG CATCCAAGAGACCTAACATGACCCAAGATGAAACGCTTGAGGCATTGTTGCATGAGTCCAAGAGTAGGTTGGAGCTTTAC CAGTCTAGAGGTTCGAGAATGTTCCAAAAATGATATCAATAGGGAGAGAAGAGTAGATTGATTCACTCCATGTTGTCCTT GTGAGGTTTTTCATTCAATGATTCGGATCTAAGTCTATATTTTTCTTGACTGTATATACAATCAAATGCCCTCTTCAATT GTTTAGATGCTTATTCAACTATAAAGATTATTGTTTGTCTAATCTATATGTTTTAACTTTAATTTCCTCCCTGTCTAACT GAACTTCTGAAATGCCCTCTTCAATTGTTTAGTTCCCTATACGGCAATGTCACAACAACATTGTTGTCTTTGTAGATTAG CCTCCTATATTGAAATTTTCATGTTTGCTTGCAATTCTTTCCTAAACCAAGAATGTTGTAGGAGAGGCTGAACTCAGAAT CAGATGCAGGAAGAGCAACAAACTTAGCAGATCAAAAGGTAGTCAAAACACCTGGCCAATGTTACTGTGAAAAAAGAATT GAAATTGGTCACTGAGGATACTGCTATGGTACCATGTGAAGAAAGAGTTGCTCTTTGTATTGATGTGTGTTATAGAATAG AATACAACTATACAAGAGTCACACTTAAATAGAATTACAATGGAGGAAATAAAGGTTAGAATAAAGCTAACTAAAATGAA ACATATCTATTAATTAC
CDS sequence (LotjaGi4g1v0128400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGCGGAAATAGTAAAACAACTGCTCGCGAAACCGATCCAATTAGCGGACCAGGTCAGCAAAGCGGCGGAGGAAGG AAGCGCGTCGTTCAAGGTGGAGTGTTTAGAATTGAAATCCAAGACGGAGAAGCTCGCCGGACTTCTCCGTCAGGCGGCGC GTGCGAGCTCCGACCTCTACGAACGCCCCACACGGCGGATCATCGGAGATACTGAACAGGTTCTGGAAAGAGCGCTGACT TTAGTCCTCAAGTGCAAGGCCAACGGCCTCATGAAGCGCGTGTTCAGCATCGTCCCCGCCGCCGCGTTCCGCAAGATGTC GTCGCATCTCGAGAATTCAATCGGCGATGTTTCCTGGCTCCTACGTGTCTCCGCTCCCGCGGAGGAGCGCGGCGGGGAGT ATCTTGGACTTCCGCCCATCGCCGCCAACGAGCCTATTTTGGGACTCATCTGGGAGCAGGTTGCGACGCTTCATACTGGC TCCCTTGATGAACGCTCCGACGCGGCGGCGTCGCTGGTGTCGCTGGTTCGCGATAACGACCGCAACGCGAATCTGATCAT AGAGGAAGGTGGGGTTGGACCGTTGCTGAAGCTTATCAAGGAAGGGAAGAAGGAAGGTCAGGAGAATGCTGCTAAAGCAA TTGGGCTTCTCGGCCGGGACGCGGAGAGCGTGGAGCACATGGTTCATGCTGGTGTTTGCTCGGTTTTCGGGAAGATTCTC AAGGAGGGACCGTTGAAGGTGCAAGCTGAGGTTGCCTGGGCTGTTTCTGAGCTTGCTACTAAGTACCCCAAATGCCAAGA TCTCTTTGCTCAGCATCACATTGTTCGATTGCTTGTGAGCCATCTCGCGTTTGAAACGGTTCAGGAGCATAGTAAGTACT CCATTGTTACGAAATCGATCCACGCGGTTGTGATCGCGAGTAGCAATAACAACAACGGTTCTAACAATGAGGTGAAGAAG GAGAAGAAGGAAGAAGAGGATGAGGATGAGAAGGAGGTGAAGAGTCGGATACAGCATCCCTTGGCTGATAAGTCCCAAAA TCAGATGCTTAAAGTGGTCACAAGTACAATGGCAATGCATGCTAGTTCCAACAAGAACTCCAACCAAGGCAATGAGACGA CTCAAACGAGTCAAAACTCGTCACAAACACCGGCTAAGCATAGCTATTCCTATTCTGGGATTAACATGAAGGGAAGGGAG CTTGAAGACCCTGAGGTTAAGGCTAAGATGAAAGCAATGGCAGCAAGGGCCTTGTGGTGTTTAGCCAAGGGTAACTCTTC CATTTGTCGCAGCATAACGGAATCGAGGGCTTTGTTGTGCTTTGCCATTCTCCTTGAGAAAGGGTCTAGAGATGTCAAGT ACAATTCAGCCATGGCAGTGATGGAGATCACTGAAGTGGCTGAGAAAGATCCTGAGTTGAGAAGATCAGCATTCAAGCCC AACTCTCCTGCTTGCAAAGCAGTTGTTGATCAAGTGCTCAAGATCATCGACGAAGAAGACACGGACCTCCTAATCCCCTG CCTAAAAGCTATTGGGAGTTTAGCAAGGACATTCAGAGCTACAGAGACGAGGATCATCGGTCCCTTGGTTCGGCTTCTGG ATGAAAGAGAGGCAGAGGTGACAAGAGAGGCTACAATCTCCCTCATGAAATTCGCCTGCACCGAGAACTACCTCCACATT GATCACTCCAAGGCGATTATAACTGCAGGTGGTGCAAAACACCTGGTCCAGCTGGTGTATCTTGGAGAGCACACAGTTCA AGTTCCAGCATTGTTTCTTCTCTCGTACATTGCTCTGCATGTTGCTGACAGTGAGGAGCTTGCTCGGGCTGAGGTGCTCG CAGTGCTTGAATGGGCATCCAAGAGACCTAACATGACCCAAGATGAAACGCTTGAGGCATTGTTGCATGAGTCCAAGAGT AGGTTGGAGCTTTACCAGTCTAGAGGTTCGAGAATGTTCCAAAAATGA
Protein sequence (LotjaGi4g1v0128400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAAEIVKQLLAKPIQLADQVSKAAEEGSASFKVECLELKSKTEKLAGLLRQAARASSDLYERPTRRIIGDTEQVLERALT LVLKCKANGLMKRVFSIVPAAAFRKMSSHLENSIGDVSWLLRVSAPAEERGGEYLGLPPIAANEPILGLIWEQVATLHTG SLDERSDAAASLVSLVRDNDRNANLIIEEGGVGPLLKLIKEGKKEGQENAAKAIGLLGRDAESVEHMVHAGVCSVFGKIL KEGPLKVQAEVAWAVSELATKYPKCQDLFAQHHIVRLLVSHLAFETVQEHSKYSIVTKSIHAVVIASSNNNNGSNNEVKK EKKEEEDEDEKEVKSRIQHPLADKSQNQMLKVVTSTMAMHASSNKNSNQGNETTQTSQNSSQTPAKHSYSYSGINMKGRE LEDPEVKAKMKAMAARALWCLAKGNSSICRSITESRALLCFAILLEKGSRDVKYNSAMAVMEITEVAEKDPELRRSAFKP NSPACKAVVDQVLKIIDEEDTDLLIPCLKAIGSLARTFRATETRIIGPLVRLLDEREAEVTREATISLMKFACTENYLHI DHSKAIITAGGAKHLVQLVYLGEHTVQVPALFLLSYIALHVADSEELARAEVLAVLEWASKRPNMTQDETLEALLHESKS RLELYQSRGSRMFQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 653 | 652 | 0.0 | – | |
| PANTHER | 2 | 653 | 652 | 0.0 | – | |
| Gene3D | 146 | 327 | 182 | 1.8E-21 | ||
| SUPERFAMILY | 156 | 626 | 471 | 1.73E-40 | ||
| SMART | 178 | 219 | 42 | 2.2 | ||
| Pfam | 179 | 216 | 38 | 4.6E-5 | ||
| SMART | 220 | 260 | 41 | 4.1 | ||
| MobiDBLite | 307 | 391 | 85 | - | – | |
| MobiDBLite | 316 | 339 | 24 | - | – | |
| MobiDBLite | 340 | 390 | 51 | - | – | |
| Gene3D | 399 | 642 | 244 | 1.6E-20 | ||
| SMART | 425 | 465 | 41 | 270.0 | ||
| SMART | 481 | 516 | 36 | 440.0 | ||
| SMART | 559 | 599 | 41 | 17.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0128400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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