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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0129200 |
| Transcript ID | LotjaGi4g1v0129200.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | S-adenosyl-L-methionine-dependent methyltransferase superfamily protein; TAIR: AT5G66180.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|O13935|TRM4B_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b; TrEMBL-Plants: tr|I1JCG2|I1JCG2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0129200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:18842421..18846170) extracted from Lotus japonicus Gifu genome v1.2.
CTCATGGAACACGCCGCAAAGGCGCCATTACCAGAAGCTTTCCTTCACTTCCTGGAGGCCAATGGGCTCGACCCATCCAT CTACACCGCCGTCGATTCCACCCCACGATACATTCGGTAATTCCAATTTTCACTTCTTCTTCATCGTCTTCCAATTGGTA CTGTTTTTTTTCTTTCTAATTTTAATTCTGGAGATGAAATTAATAGGTTGAAACCCGGTTGCGAAGCTTGTCTTGAAGAG GTTGAAGCAGAGGTGAAATGCAAGCTCGAGAAATTGGAATGGTTGCCAGGGTTTTACTCTCTTCCTCCTCATGTTCACAT TGCTGGCTCTAAGCCTTACAAAGAAGGGAAGGTAATTTAGTAGTTTGGTTGCCCAAAATATTAATTAACCAAGCAATGTT TCAATGAATTGTGAGGAATGATGTATTAAACTTGATAAAATGTGAATTCAATTGATAATTGTATATAATTACACTATTTA TACAGTGAATAACTCAACCTTAGAGTCTAACTAACTCAACCAATTGCTAACAACCCCTAACTGAATTCTAACTACCCTTA ACTGAATCCTAACCAAATGCTAACTACTTATTATGCTCAATATGATGAATGTCATTTTTCTGATTTATTTGTATCAGATA TATGGAATTGATGCATCTTCAGGAGCTGCTGTTATGGCTTTAGATATATCACCTGGGGATCATGTCCTGGACCTATGTGC TGCTCCTGGTAGATATTTCTCTGCTCAATTGTGTTTCTATTCTCTGTTTATTTATAAATTGTAACTGATGTTCAAAAAAT TAAATCTTTTTGAGATTAATATTGATTTATATCAGATAGAATGCGTTTAAAATTGTGAATTCCGGAATTCAAATGATGAT TTTACATTTAGGTTTTTATTTTAATTAATTGTTTAGGGATGTTTGTTTTAGTTGAGAGAGGAGTAATATCAAATAGTGGC TATAGCATAGCAGATTTTTGGCTAATCGCGACGTCGCTATTGCCCACTATAGTGCGCTATTCCAGCTATTCGCCGCTAAA TAGTGGCCAAAATAGCGGATTTTTGGCTCACCGCGATGGTCCGTGATCGCGATTTGAAAACACTGAGCAAACTATATAGT TTCTCAATTGGCTGGAGTCATGATTGTAATGGTTTGTCTGAAAATTAATTTTCAGGTGCTAAACTTTGTATGATACTAGA CCTTCTTGGTGATTCTGGCTCTGTTACGGGAGTTGATGCTGCGAGGCATCGATTGGCAGCATGTAGAACAATGCTGCAGA AATATAAACTGGGTGATCGATGCCGGCTTTTTGTTGCTGATGGAACAGCATTTTCAGTTATTCCTCAGGGGTTTTGTTCG GATTCTAAATCATGTAATTGAAGTTTAAGTTGTGCAGTACTCATATTTGATATCATATTTATTAATCTTCATTACCTGTT TTGAAATACTTTCATTCTGTCAAGTATGAAACAGGCGAGTCTGGATTGGAAGAGAGAATGGATGTGTTCAAGGAGTGGAC ATCTAGGAGACCATGGAAAGAGAGAAAAAGAGCAAATCAAAGTGGGACTCCACAGTTGGTGTCTAGGTCTCAGCCTCCTG AACTCATATATTATGGACAACATTCTGGAGTTATTGGTCTTACTAAAGGAGAATTATATAAGACTGTATCTGACAATGAG ATTGCAAGCCATGGCTATGACAAAGTAACTAGTACCTTCCTTTTGAATATATCTTGCATCGTTCTTTGCTTACTTTTACC GTGAAAAGTTTATCATTTGGATTTGGTGCAGGTCCTTGTGGATGCTGAATGCACTCATGACGGTTCAGTTAAACATATAC AAAAGTTTGAACATTGGGGCTGGTTAACACTTCAACGCCGTTTGCTGGATGCTGAGAGGACTGATAATTTACATGCTCTT CAGGCAAATAACTAGTGTCTCATTATTCTCTTTGATCCATAAATACACATTTTCTACCTGTTGGAACATTTAACTGGAAC TATTATCTTCATTTCTTCCCTGTCTTACACACTCTTATTCTGACACAAAGCTCCAACTGAGAAGAAATAGAAAAGGTTGG TAATTAATGAGATAGTACAGGGTTATTGTGTTGTTGTCAAACACTAAACAGTATATGCATTTTCCTGTTGGATAGCTTCT AAGGGGTAATCACTTATCAATGGTGAACTGACTACTGAGGCAACCTTGGACTTCAAATGAAGTGCATTGCCTAAAACATG TTTGAAAATCTATGTGCTTAAGTGATTAAGCATGATGCAAGTTTATATAACTAATTGGATGAAGATATGTCTGAGTGGGT AAGTTGCTGAAACAAGCCCACCCGCTGCAGCATTACGTCTAAACCTCGTCAAAAGAAAAATAGTGAATTTGAGATTGCCA GCAATATCACTAACTGAATATGAGTGTAAACTTCATTTTAAAGCTACTGCTTTTGGTTGTGGTATTGCTACCCAAAAAGC ATTTATGGGCTGGAGTGCTGGACTAAACAAATATCAGTCCATCAAAACATTATAGTAATGCGAATGTATGGATTTTAAGT TGATAGTTTCTACTTGCCAGTATGACAACTATCTTCAATTGGTATATTATTTTGAGTTTCTGTTTCATAGTTATTATATG TGCACCATTTATTCCAAAAAGAAAAATTAAACATGAAATTTTTGAACACCGTATTGGAAATTATTCCTATTACCATTTTC GGCTTAGTTCTTGCATCCCAGTCGTCTTAAATATTACTTTGTTTTACCTTGTGTCTCACTACAGCTGAATCTTCTCACCA ACGGTTTCAGACTTCTAAAAGTTGGGGGGTCACTCGTATATAGCACTTGCAGGTTCCTTTTACTTTGCAACTTGGCCTTT TTAAATGCAGTCAAATAACATGTGTACCAAGACACTATCGTTTATATCATGTGATTTTATTCTGACAAATATGTTATTGT TGATTAGCTTAACTGTTGCTCAAAATGAAGATGTGGTGGAGCAGTTCTTGAAGGAAAATGTGACTGCTGGTATGATCGTC ATGCTTCATATTCAATTTCTTTTCAGTTGGAAAATTGTCTGAAATGTCAACTATTTCTATTGTCCATGTTTAGTATTATT TGTTATCTATTTCAGCAATGCGATTAGCAGATTTACTGTGCTTGTTTCTTGTCAAATGCTATGTGCTTATCTTGTAGAAA ACCCCCATTCTTGGATGCATGATCCCTCTATCCTCAAACCCTTTAACCCTCTTTCCCCCAACCCTCTTTAACTCTTTTGT TGATGGAAAAAAGTTCTGGTTGAATAAGAAATTGTCGGAGATTACAAGATCCTCAATTTAACTAGTTGACCTTTCATGTT CAGTATTACTCTTCTTTTTTCTTTTTTCATTTTCATTTTCATTCTTCTGGTGAACTCCGTTAACTTATGAAATGTAATGA TATAGGATAGTTACATGTCGAAATCGTTTACATTAATTTGCATAATGAGCTGAGTAGGCATAGTTTTTAGTAATAATTCT TGATCACATACATGTTCTGCATTTGAGTTACATGCATGTGCTTGAGGTGTTTGAACGTTCCTCTTATGTTTTTGAAACTC ATTTTTCAATCTACAGAGTTGATGGAGATAGATGTTGCTAGAAATTGGCCTTGCAAAGGTGGTCGCATACCAAAAACATG GCGATTTGACTCCTTAACATCACAAACCAGTGGACTCTTTGTGGCGAAGTTCACAAAAGTTGTCATATGA
CDS sequence (LotjaGi4g1v0129200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACACGCCGCAAAGGCGCCATTACCAGAAGCTTTCCTTCACTTCCTGGAGGCCAATGGGCTCGACCCATCCATCTA CACCGCCGTCGATTCCACCCCACGATACATTCGGTTGAAACCCGGTTGCGAAGCTTGTCTTGAAGAGGTTGAAGCAGAGG TGAAATGCAAGCTCGAGAAATTGGAATGGTTGCCAGGGTTTTACTCTCTTCCTCCTCATGTTCACATTGCTGGCTCTAAG CCTTACAAAGAAGGGAAGATATATGGAATTGATGCATCTTCAGGAGCTGCTGTTATGGCTTTAGATATATCACCTGGGGA TCATGTCCTGGACCTATGTGCTGCTCCTGGTGCTAAACTTTGTATGATACTAGACCTTCTTGGTGATTCTGGCTCTGTTA CGGGAGTTGATGCTGCGAGGCATCGATTGGCAGCATGTAGAACAATGCTGCAGAAATATAAACTGGGTGATCGATGCCGG CTTTTTGTTGCTGATGGAACAGCATTTTCAGTTATTCCTCAGGGGTTTTGTTCGGATTCTAAATCATGCGAGTCTGGATT GGAAGAGAGAATGGATGTGTTCAAGGAGTGGACATCTAGGAGACCATGGAAAGAGAGAAAAAGAGCAAATCAAAGTGGGA CTCCACAGTTGGTGTCTAGGTCTCAGCCTCCTGAACTCATATATTATGGACAACATTCTGGAGTTATTGGTCTTACTAAA GGAGAATTATATAAGACTGTATCTGACAATGAGATTGCAAGCCATGGCTATGACAAAGTCCTTGTGGATGCTGAATGCAC TCATGACGGTTCAGTTAAACATATACAAAAGTTTGAACATTGGGGCTGGTTAACACTTCAACGCCGTTTGCTGGATGCTG AGAGGACTGATAATTTACATCTGAATCTTCTCACCAACGGTTTCAGACTTCTAAAAGTTGGGGGGTCACTCGTATATAGC ACTTGCAGCTTAACTGTTGCTCAAAATGAAGATGTGGTGGAGCAGTTCTTGAAGGAAAATGTGACTGCTGAGTTGATGGA GATAGATGTTGCTAGAAATTGGCCTTGCAAAGGTGGTCGCATACCAAAAACATGGCGATTTGACTCCTTAACATCACAAA CCAGTGGACTCTTTGTGGCGAAGTTCACAAAAGTTGTCATATGA
Protein sequence (LotjaGi4g1v0129200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEHAAKAPLPEAFLHFLEANGLDPSIYTAVDSTPRYIRLKPGCEACLEEVEAEVKCKLEKLEWLPGFYSLPPHVHIAGSK PYKEGKIYGIDASSGAAVMALDISPGDHVLDLCAAPGAKLCMILDLLGDSGSVTGVDAARHRLAACRTMLQKYKLGDRCR LFVADGTAFSVIPQGFCSDSKSCESGLEERMDVFKEWTSRRPWKERKRANQSGTPQLVSRSQPPELIYYGQHSGVIGLTK GELYKTVSDNEIASHGYDKVLVDAECTHDGSVKHIQKFEHWGWLTLQRRLLDAERTDNLHLNLLTNGFRLLKVGGSLVYS TCSLTVAQNEDVVEQFLKENVTAELMEIDVARNWPCKGGRIPKTWRFDSLTSQTSGLFVAKFTKVVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 385 | 385 | 26.538 | ||
| PANTHER | 4 | 382 | 379 | 5.6E-112 | – | |
| PANTHER | 4 | 382 | 379 | 5.6E-112 | – | |
| PRINTS | 9 | 27 | 19 | 1.9E-27 | ||
| SUPERFAMILY | 30 | 385 | 356 | 8.91E-41 | ||
| PRINTS | 81 | 95 | 15 | 8.4E-11 | ||
| Pfam | 98 | 169 | 72 | 3.1E-9 | ||
| CDD | 109 | 173 | 65 | 5.47334E-4 | – | |
| PRINTS | 124 | 134 | 11 | 8.4E-11 | ||
| PRINTS | 135 | 152 | 18 | 1.9E-27 | ||
| Pfam | 250 | 382 | 133 | 6.1E-17 | ||
| PRINTS | 258 | 270 | 13 | 8.4E-11 | ||
| PRINTS | 278 | 297 | 20 | 1.9E-27 | ||
| PRINTS | 314 | 330 | 17 | 8.4E-11 | ||
| PRINTS | 367 | 384 | 18 | 8.4E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi4g1v0129200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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