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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0131900 |
| Transcript ID | LotjaGi4g1v0131900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | La-related protein; TAIR: AT4G35890.1 winged-helix DNA-binding transcription factor family protein; Swiss-Prot: sp|Q94K80|LRP1C_ARATH La-related protein 1C; TrEMBL-Plants: tr|A0A0L9TP03|A0A0L9TP03_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0131900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19307229..19311094) extracted from Lotus japonicus Gifu genome v1.2.
AAAGTGAAATCCTGATTAAGAGAGTAACAGTGAGAGAGAGCGAAGCGAACGAAAAGGTTAGAGAAAGAACGAACAACGTG ACCCCACCGTTCCTCTTCGTATAAATGCACATCATCTCACTTTCTCTTAACAACAAACCCAACCAGCTCCTTCATTTGCT GCTGCTGCCAATTTCCGATCGGAGATTCATCAAACCCTAATCTCCGATTCATCCTATTTTTGATTTCAGATTAACCCTAA CGCTTCATTCTGATTGCAATGGCTATGAGTGGTGCTGCCGCTTCTCCCAATCATTCCCCTTCTCCGTCTCCATGGAGCCA GATTGTCTCCGCCGCCGCGCCTCCCTCATCACCGCCCGCCGTATCCGTATCCGACTCATCCGCCGTTAATTCCGCCCCGG CGGAGGAGACCGAGAACAATGCCAACGGCGGTAAGAGGCCTGCCTGGAACAAACCCTCCAATGCGGCTTCCTCCTCCGTC ATGGGCGCCGATTCCTGGCCTGCTTTGTCCAAGTCCGCTCATTCTCCGGCTAAATCGCTCCCCGAATCGGTTAAGGGTTC CGTAGATTCATCATCGCCCTCGCCAAATTTACAGGTTTTATTTTATTCCTTCTCGATTTTTCGGAATCTCAAAAAGGGAA AATAAATAAAAAATGCTTGCATTCATGGCTAGATTTTTCTGTTATTTTTTTTTCTCAATTAGGGTATGTTTTGTATTGCA ATTACTATACAATTACAGTTACAATTTAGATCAAGGTTGTTACTTGTTACTGTCGATTGTAAATGCATGTTTTTTTGTTG TTGTTGTTGCATTTGTATGTGTACATAGATGCTGACTGATGTTGTTTTGATTGTTAGGGTACCGGAAGCGCGACTCCCTC TCCGCAGAGGCAAGTGAGGGATAATGCCGGTGTGAACAATACTTTGCCGACTCAACAGAAGCCTTATAAGCGAAGCAATT CGAATCTGTCTTCCAATGGAGGCCACAATCCACAACATTCTGGGAATCAGGGTTCCGTGGCTGCGACGGGGTCCCACAGC CACAACTCTTCGCAGAAGGACCACCACCAACAAAGAACTGGGTTTGTGTCGAATGATCACCCGCCGCAGCAGCGAAATTC GTATAGAAACCGGAATGGCGGCGGTCCTCATCAGCGGGGAGATGGTGCTCACCATCATAACTATGGGGGCAGGCGTGATC AGGACCGTGGGAATCAGGATTGGAATAATCAGCGAAATTTTAATGGTAGAGACAACTATATGTCTCCGAGATTTGTGCCA CGATATATAAGGCCCCCACCTCCTCCTAATCCTGCTCAATTGTTTCCACCGCCACCACCACCAATGCGTCCATTCGGAGG CTCCATTGGGTTTCCCGGTAACTCCATCGGGTTTCCTGGTATGTGTGTTATTATGTGAAGGATGTTATTTCATAGTTTAT GTATATGCTCTGATGATTATATGCATTTCCAGAACTACCACCTCAAGTGGTATATGTTCCACCTCCACCGCTGGACTCCC TAAGAGGCGTATCATTTGTGCCTCCAATACCACCTAATGCAATGTTCTTTCAACCTCCGGATCCTCAATTGCACACTATG ATTGTCAACCAAGTTGACTACTATTTCAGGTAATTCCTACACTTTAATGAGCCACTCTTTTCATTTGTTGTTTTAACTCT TTTCCAAAGTTGACTGTACAACTTGTCTTTTGCAGTAATGAGAATTTAGTTAAAGATATATACTTGCGGCAGAACATGGA TGACCAGGGCTTTGTTCCCATAAATTTAATAGCAGGCTTTAAGAAAGTAAGTTGTTGGGGTATTTGATTGATTGTTTTCT GATCTTTGAGGTGAGCTGGTCGGGCGTGTTTACAACTTACTAACAATAAAATGCATTTTTTATTTTTTACACTGTTAATT ATTCTACTATTGGAGAATTTGTATCTGATTATTGTCTTATATTCTCTAACATATGCTTCTTGTATTGTTTAACTGCTTTC TTAGCAAGTGTATTAGGTAATGATTTATTATGTGTGTAGTAATCCTCTTTCGATACATCTTTCCACTTTTAACTATACAG CTCTTTCAGTGTCAATCAGAGGATAACAAATATGGCTGCGTATTATTTTTGTCTCCCTATGGATGCAGACTTCCTCACAT GAAATATGTATTCTTTGTAGGGTTCCTCTTGTTTTTTTAAGTTCAATATTATGATATAAAATTATCTATAGTGGGCATCT TGTACTGAGAGGCTTGAGTTGCTTTGGGTATCTTATACTAATAGGAAATTGCTTGCTTATGTTGGCCTTAAAGCTTTTGA TATGAAGCTAAGTTCTATCCTTATAATGATTAAACTGTTTTTTCAATTCTCTGAGGTGAGTCAAAATGTGTATGAAAATT GATCTCTCTTGATTTTCTATAATCTTATTATGATTGACATTGGTCAAATGGAAACGGATGGCTAACTGAGCATGATTGTT CTTTTGTGCAAATTTGTCTATGATGGGTATGTGGAAAATGCTTGGTTGTTGTTTTATTCGTCTATGCTGGCTATGTTGGA GTGTTCGCTACTAGATGACAAGTGTGTTTTATCTCTATCAGGTAAAGCTTTTGACTGACAATATCCAGATTGTACTAGAT GCTGTTCGAAGTTCATCTGCTGTTGAAGTGCAGGTATTATTCTTGATCTGACCTTGAATTTCCAAGTTTTAAGAATTTGA AAATAAAGAATACATCAGGTATTTTGTTATTTGTGGTATATTAACTAGTGAAACCTCTTCTTTTCAATTTGTTACTCTTC TATTATAGGGTGACAAAATAAGGAGACGGAATGATTGGAGGAGATGGCTGATGCCTCCTGTTCAGATTTCTAACGTTACA GCACCCCAAACTGTTGGACAGCTGACAGAACAAGTTCAAAGCATTTCTCTTGAAACAACTAAATCTGATGCTGCTGGAGG ACAAGATGTTTCACATAGTAGACCATTGGGGGATTTTAATAGTCAATATATGCTTTCCACGAGCGAGGGCACTGGTCAAG TCGGTATTCAAGTTTCGGATCACTCTATATCTGCAAGAAATTAGAATTGCAGATCTGAAAAGATTTTTTTTGGAGAATAT TCTTCAGGGGGAGCAGGAAGCAGGGATCTAACCTGGTCTTATTTTTACATATGGTAATGGCACAGTGGGGCATGATTTCT CATGAGGTACTAGAAAAAAGTGAAAAACATGATTGAGAAATGGGAAGAAAATACCTATTAGAAAACAGAAAGAAAGACCA AACGATGAAAATCCTTCACTGAAAGGGCACATTTTGTATTCTGTTAAGGAGCTAGTAGCATGACTCTTGTGATGACTTGT TTATATGGGGTGTAATGTTCCTACTCTGATGGTGGGATGTTGGTATGCTTTAATCTGGGGAATATTTTATTTTTCTTTTT AGGGTTTATCTTCCCCTGAATTCCCCTCAGCTGCTTTTTATAATCTTTGGGATCATCTTCTCCCACCAATTAGGAGCATT ATATGTGAGATAATGGGTGTTGAATGAGTGTGATAGCTACTAGTAGACTGAGTGAAGGAAAGACGGCTTTCTGCTGAAGG AGCATGTCCTACAACTGCTTTACACAATGATTGCTTGATGTCCCTTGCAATTTCCCGTGACATCGTATTTGGAATGACTT CATATTTATACTTTTTATTCTATTTTTATTTTATTTTTTTCTATTTAAAGCTAGGCATAAACTGCTCCCATGGGGCTATT TTAACTTAAATTTATCCAGATTTCAGCTGTATACGATTTTGATCTTGTTAGTTTTGACTTTGGAAATTGAACTTTAGCTA GTCTTAATAAATTCATATCCCAACAA
CDS sequence (LotjaGi4g1v0131900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATGAGTGGTGCTGCCGCTTCTCCCAATCATTCCCCTTCTCCGTCTCCATGGAGCCAGATTGTCTCCGCCGCCGC GCCTCCCTCATCACCGCCCGCCGTATCCGTATCCGACTCATCCGCCGTTAATTCCGCCCCGGCGGAGGAGACCGAGAACA ATGCCAACGGCGGTAAGAGGCCTGCCTGGAACAAACCCTCCAATGCGGCTTCCTCCTCCGTCATGGGCGCCGATTCCTGG CCTGCTTTGTCCAAGTCCGCTCATTCTCCGGCTAAATCGCTCCCCGAATCGGTTAAGGGTTCCGTAGATTCATCATCGCC CTCGCCAAATTTACAGGGTACCGGAAGCGCGACTCCCTCTCCGCAGAGGCAAGTGAGGGATAATGCCGGTGTGAACAATA CTTTGCCGACTCAACAGAAGCCTTATAAGCGAAGCAATTCGAATCTGTCTTCCAATGGAGGCCACAATCCACAACATTCT GGGAATCAGGGTTCCGTGGCTGCGACGGGGTCCCACAGCCACAACTCTTCGCAGAAGGACCACCACCAACAAAGAACTGG GTTTGTGTCGAATGATCACCCGCCGCAGCAGCGAAATTCGTATAGAAACCGGAATGGCGGCGGTCCTCATCAGCGGGGAG ATGGTGCTCACCATCATAACTATGGGGGCAGGCGTGATCAGGACCGTGGGAATCAGGATTGGAATAATCAGCGAAATTTT AATGGTAGAGACAACTATATGTCTCCGAGATTTGTGCCACGATATATAAGGCCCCCACCTCCTCCTAATCCTGCTCAATT GTTTCCACCGCCACCACCACCAATGCGTCCATTCGGAGGCTCCATTGGGTTTCCCGGTAACTCCATCGGGTTTCCTGAAC TACCACCTCAAGTGGTATATGTTCCACCTCCACCGCTGGACTCCCTAAGAGGCGTATCATTTGTGCCTCCAATACCACCT AATGCAATGTTCTTTCAACCTCCGGATCCTCAATTGCACACTATGATTGTCAACCAAGTTGACTACTATTTCAGTAATGA GAATTTAGTTAAAGATATATACTTGCGGCAGAACATGGATGACCAGGGCTTTGTTCCCATAAATTTAATAGCAGGCTTTA AGAAAGTAAAGCTTTTGACTGACAATATCCAGATTGTACTAGATGCTGTTCGAAGTTCATCTGCTGTTGAAGTGCAGGGT GACAAAATAAGGAGACGGAATGATTGGAGGAGATGGCTGATGCCTCCTGTTCAGATTTCTAACGTTACAGCACCCCAAAC TGTTGGACAGCTGACAGAACAAGTTCAAAGCATTTCTCTTGAAACAACTAAATCTGATGCTGCTGGAGGACAAGATGTTT CACATAGTAGACCATTGGGGGATTTTAATAGTCAATATATGCTTTCCACGAGCGAGGGCACTGGTCAAGTCGGTATTCAA GTTTCGGATCACTCTATATCTGCAAGAAATTAG
Protein sequence (LotjaGi4g1v0131900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMSGAAASPNHSPSPSPWSQIVSAAAPPSSPPAVSVSDSSAVNSAPAEETENNANGGKRPAWNKPSNAASSSVMGADSW PALSKSAHSPAKSLPESVKGSVDSSSPSPNLQGTGSATPSPQRQVRDNAGVNNTLPTQQKPYKRSNSNLSSNGGHNPQHS GNQGSVAATGSHSHNSSQKDHHQQRTGFVSNDHPPQQRNSYRNRNGGGPHQRGDGAHHHNYGGRRDQDRGNQDWNNQRNF NGRDNYMSPRFVPRYIRPPPPPNPAQLFPPPPPPMRPFGGSIGFPGNSIGFPELPPQVVYVPPPPLDSLRGVSFVPPIPP NAMFFQPPDPQLHTMIVNQVDYYFSNENLVKDIYLRQNMDDQGFVPINLIAGFKKVKLLTDNIQIVLDAVRSSSAVEVQG DKIRRRNDWRRWLMPPVQISNVTAPQTVGQLTEQVQSISLETTKSDAAGGQDVSHSRPLGDFNSQYMLSTSEGTGQVGIQ VSDHSISARN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 248 | 248 | - | – | |
| MobiDBLite | 8 | 79 | 72 | - | – | |
| PANTHER | 30 | 479 | 450 | 2.7E-142 | – | |
| PANTHER | 30 | 479 | 450 | 2.7E-142 | – | |
| MobiDBLite | 98 | 174 | 77 | - | – | |
| MobiDBLite | 188 | 206 | 19 | - | – | |
| MobiDBLite | 211 | 232 | 22 | - | – | |
| SUPERFAMILY | 323 | 415 | 93 | 4.35E-28 | ||
| Gene3D | 325 | 416 | 92 | 2.1E-30 | ||
| ProSiteProfiles | 326 | 415 | 90 | 25.485 | ||
| SMART | 330 | 406 | 77 | 4.9E-23 | ||
| CDD | 335 | 405 | 71 | 3.33153E-32 | – | |
| Pfam | 336 | 391 | 56 | 1.1E-20 | ||
| MobiDBLite | 442 | 464 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0131900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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