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LotjaGi4g1v0133000.1

Overview

Field Value
Gene ID LotjaGi4g1v0133000
Transcript ID LotjaGi4g1v0133000.1
Lotus japonicus genome version Gifu v1.2
Description Prolyl 4-hydroxylase alpha subunit, putative; TAIR: AT5G66060.1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; Swiss-Prot: sp|F4JZ24|P4H10_ARATH Probable prolyl 4-hydroxylase 10; TrEMBL-Plants: tr|A0A1J7HAJ4|A0A1J7HAJ4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0133000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:19390781..19394831) extracted from Lotus japonicus Gifu genome v1.2.

TATCACAGCACACGGAACCGCCTTTGCACACAGAGAGAGACGCACGACCTTTCGACCACTCCATCTGTCTCACACAATGA AAACTCTCTTCCTCCAATCCTCCTCTGTTTTCCATTTCAATTTCACATCTCATTCTCCATCTCTGAATTTTACCAATGGT GAAACTCAGGCACAGTCGTATGGTTTCTCGGAAATCTTCGCCAATGTCATGGACACTGACCCTCACCTTGTTCGTCTCCT TCATCTTCCTCGTTCTCATTCTCCTCATTCTCGGTGTCCTCTCTTTCCCCAATGCATCCTCTGACTCTGGTGTTCCCAAA CCCAACGACCTCAACTCCATCGCTCGCAACGCTATAAGGTAGGTAGCAATGACGTGTTTCTTACATTTTCGTTGTTTTCT TTTCGCTCACACGTTTGCAGAAATGAAGGTGATGACAACGGCCCAAGAGAGAAGTGGGTTGAATTGATTTCGTGGGAGCC TAGAGCTTTTCTCTATCATAATTTTCTGGTTAGTTTTGGCTTTTTCCTTGCTATTCTTTTATTTATCTCATTGCTTCTTT TGTTGCTTATTACATGAAATGAGTTGTTGATTATCTGAAATTATGAAGTGGATTGCTTTTATATTTTTCTCATACCAAAC ATGCTTCAAGTGTTTTTTATTCTATTTCCAATTGATTCCGAGGCCAGAATTGATTCTGCGAAGAAGCTTTTTGTGTAACT TATGGCTGCCAGAATTGATTCTAATGAAATAGAAGCTTATCCAAACATGCTAATATGCTATGCTATTAACTAAACAAGCA GTTCCTTTATCTTTTTAGAGGTGAAGATCATTTTCATGGTTTAGGAAAGATTAGGAAATGATGAGAAAAGTAATAAACAC TTGCTTTTAAATGGATTACTGCTTCTGGCTTCGCTTTTATCTTACAGGCTCGGCGTTTTCAATTTTTTAATATTATTTTA AGATGATATGGTTAGATTGAGCTTAATCATTTTTTTAAGGGTCTTACCTTATTGTATGGTTTATATTGCAATTTCTCAAC TTTCCAAATACTAAGACTTAATTGATTGATCTGGGCAGACCAAAGAGGAATGTGAATATCTAATCAATATAGCCAAGCCA CATATGCGTAAGTCAACCGTTGTTGATAGTGAAACTGGAAAGAGTAAAGACAGCAGGTTAGACTCTTTGAGTTCAATATT GAAAATAAATATCCTTTGTTTCGTTTAGATTTCCATTGCCAGTTGCCACTTCATTTCAGAAAGCCTCTTGTTCACATACT AGTATCTAAACTACATATAAACATTAGTTATAAAACATTCAGATGCGAAATTGTATATGGGATTTGCTGCTATAGGTCAT TCCAATGGTAGATTTGATCCAAATGATATCTCACTCTTGACCAACAATTTTAGTTTATACTCTTATTGCAGGATAATGTT TATTGTTCCCTAAACATTTAGGTCAAATCTTTCATTCGAATATGACTTAGAATCCCCTAGTGTTCTTTGAGTTCAATATT GAAAATATATTTTCCCTTGTTTAGATTGGCCTCCTTTTGTTTACATATTCCTTTTTGCATTTAGACAAATCCGTTTGTTA ACATATTCCTTTTGTATTTAGAGCACGGACAAGCTCTGGAACTTTTCTGGCGAGAGGACGTGATAAAATTGTGAGGAATA TTGAGAAAAGAATTGCCGATTATACGTTTATACCCATAGGTATCACTTTCTCTTTTTTTTTCCATTAAGAATTCGTGCTC TTGCAAATGCTGTGGCAATGTATTTGATGATTGAGAGTATAGAAATTTCTTATATTGATAAAATGAAATCCTAAAATAGA TAAAAGATTAATTTACAGTTATTTTCTATGTAATTCCATATTTTGCATGCCTAACACCCAGTGTTATAATTTTTTTATCT CATTGTGTATATAATAATTCATCTGTTATATGCTTTCCAGTTGGTAATTAAAATATTTTCTATATTTTGTGACTTAAATA CTGAATCAATCTTTAAAATTAGTCTGTGTACCATACATTTTCCGTGACTGAATATGAAACTGAATTTGTCGAATTGAAGT TTGTGTTTGTGATTCATTATTCTTGATGTTTACCTTGATGCATCTTTAGGCCTTTCTGTATATGAAAAGGAAAGAAAAAT CATGTAATGCAGCAGAGTTCTTTGGAAATCATATCAGTGATGATGACCATATTGTTTTTTAGCAATATGTACATGTCTAG CCTGTGCTTCTACTTTCAATAAGATATGTTTGAATTCCATCTATCAGCTCCTGACATTACTGTGTTTTGTTTGCCTTTGT TTTCTTTCTTTAGAATTTTGAAAATGAATGGCTCACCATGTTGTGTGGCTATATGCACTCCATTTATGAAGGGCTTTGGA TAAGAGTTATTTTAAAACTGATTTTCCACCAAGCCAACAAGAAGGAATATTTTTAATTGTCTTTACCATCTGGACTATGA TGCTCAGATAGTAAGTTATTTTTCAGCATATACTTAAAAAACCATTAATAAGGTGTGTCTCCCAATATGCAGAGCATGGT GAAGGACTTCAAGTTCTCCATTATGAAGTTGGACAAAAGTATGATTCTCATTATGACTACTTTATGGACGAGTTTAACAC TAAGAACGGTGGTCAGCGTCTAGCAACAATGCTGATGTACCTGTAAGAGCCTTCAATTGCCTTAGATGTTGTTAACTTCA ATTTGTCTTGGATAAAAAGACAGATGCTAATTGTTGTGCACTTTTTTAATCTTAATGACAGTTCCGATGTTGAAGAAGGG GGTGAGACAGTGTTCCCATCTGCCAAGGGAAATTTTAGCGCTGTACCTTGGTGGAATGAGCTCTCTGATTGTGGAAAAAA AGGACTGTCAATTAAGCCAAAAAGGGGTGATGCTTTACTTTTCTGGAGTATGAAGCCTGATACAACTGCAGATACATCGA GTTTGCACGGTTAGTTGCTCTTTTATGATCGTCTTAATATTTCTGAAGTGCTCTTGTTTCAGCTAAATTTCATTTTTAAA GTAGACAAGTTAACAAGCCTATCTATTTTCTTGATAATTTTCAGGTGGTTGTCCAGTGATTAAGGGTGATAAGTGGTCAT GTACAAAATGGATGCGTCTCAATGAATACAAAACTTAAATATACATTACTATAGGTAGTTATCTCCCCTTTCTTTTTGTA CTGACGTAAATATAGTGCTGAAGTACTGCTCGACAACAGAGTTTATTTGGCAATATTTACACATAATTTTTAACTGAGTC TGAGCTGCATCAGCTGATAGTGTTTGTATCCAGAGTTACTCAATATTCTTTGTTCAGAGTTGAATTTCTTGCCAAACATT ATTCAGAGATGGGGCATTTTTTTTAATAAATTTAATGTGATAGTTGTTGCTATTCAATTCTCATGTTCATTTACTTCTGT TCCAGCCTTCTGAGTTCGTCATTCCAATATACAGTACCAAATGATTGGCGGATATTGCTTTCAAGGCTGAAAGGAAAGGT TGTTTAGAGCTTGTTGCAGCATTCTGTAAATTTAATGTTTACCGTAGTCAATCAATTATTTGCACTACCCTTCTCAACTA TAGTAGGAATAAATATTAATATTTTTTTTATATTTGTGAATTTGCATTAAGAGGCTTAACAAAATGTATGAAATAGATGG AATGAGTATACCATTACCACCGGCTTTTCGAGCAGAGTTTAATTTTCATGTGCATAGAATCATTGTAAGCCTGTTGTATT ATTTATTGAATTCTTTTGGTAGACTTTGTTTGTTAAAGTCGATGTAATGCCCTCGAAGTCAAATATCACTTTCTCTTTCA TTTCATTTTTACTAATTTTCTCTTCGTATTTCTTTCATATTTTTTATCACATTATTCATAATATATTTTATTTCTCTTTT TTCTTTCATTCCTATTTCTCTTATTCTAATATCATCGAGTGTATTTGGGTTGTGAATCTAACTTTTTCCTAACATAATAG ATGGTTTGTGTAATGCATTAGATATAAGAGCATTGTGTAAATTAGTCTTAC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0133000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTGAAACTCAGGCACAGTCGTATGGTTTCTCGGAAATCTTCGCCAATGTCATGGACACTGACCCTCACCTTGTTCGT CTCCTTCATCTTCCTCGTTCTCATTCTCCTCATTCTCGGTGTCCTCTCTTTCCCCAATGCATCCTCTGACTCTGGTGTTC CCAAACCCAACGACCTCAACTCCATCGCTCGCAACGCTATAAGAAATGAAGGTGATGACAACGGCCCAAGAGAGAAGTGG GTTGAATTGATTTCGTGGGAGCCTAGAGCTTTTCTCTATCATAATTTTCTGACCAAAGAGGAATGTGAATATCTAATCAA TATAGCCAAGCCACATATGCGTAAGTCAACCGTTGTTGATAGTGAAACTGGAAAGAGTAAAGACAGCAGAGCACGGACAA GCTCTGGAACTTTTCTGGCGAGAGGACGTGATAAAATTGTGAGGAATATTGAGAAAAGAATTGCCGATTATACGTTTATA CCCATAGAGCATGGTGAAGGACTTCAAGTTCTCCATTATGAAGTTGGACAAAAGTATGATTCTCATTATGACTACTTTAT GGACGAGTTTAACACTAAGAACGGTGGTCAGCGTCTAGCAACAATGCTGATGTACCTTTCCGATGTTGAAGAAGGGGGTG AGACAGTGTTCCCATCTGCCAAGGGAAATTTTAGCGCTGTACCTTGGTGGAATGAGCTCTCTGATTGTGGAAAAAAAGGA CTGTCAATTAAGCCAAAAAGGGGTGATGCTTTACTTTTCTGGAGTATGAAGCCTGATACAACTGCAGATACATCGAGTTT GCACGGTGGTTGTCCAGTGATTAAGGGTGATAAGTGGTCATGTACAAAATGGATGCGTCTCAATGAATACAAAACTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0133000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVKLRHSRMVSRKSSPMSWTLTLTLFVSFIFLVLILLILGVLSFPNASSDSGVPKPNDLNSIARNAIRNEGDDNGPREKW VELISWEPRAFLYHNFLTKEECEYLINIAKPHMRKSTVVDSETGKSKDSRARTSSGTFLARGRDKIVRNIEKRIADYTFI PIEHGEGLQVLHYEVGQKYDSHYDYFMDEFNTKNGGQRLATMLMYLSDVEEGGETVFPSAKGNFSAVPWWNELSDCGKKG LSIKPKRGDALLFWSMKPDTTADTSSLHGGCPVIKGDKWSCTKWMRLNEYKT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 20 20 - –
Phobius
SIGNAL_PEPTIDE
1 43 43 - –
PANTHER
PTHR10869
6 291 286 9.3E-142 –
PANTHER
PTHR10869:SF172
6 291 286 9.3E-142 –
Phobius
SIGNAL_PEPTIDE_H_REGION
21 39 19 - –
TMHMM
TMhelix
21 43 23 - –
Phobius
SIGNAL_PEPTIDE_C_REGION
40 43 4 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
44 292 249 - –
Gene3D
G3DSA:2.60.120.620
80 287 208 4.0E-78 –
SMART
SM00702
88 286 199 1.1E-63
IPR006620
ProSiteProfiles
PS51471
164 287 124 11.824
IPR005123
Pfam
PF13640
168 286 119 4.4E-22
IPR005123

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005506
Molecular function Iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0016705
Molecular function Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
Subterm of
GO:0031418
Molecular function L-ascorbic acid binding Interacting selectively and non-covalently with L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0133000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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