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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0135800 |
| Transcript ID | LotjaGi4g1v0135800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tail-anchored protein insertion receptor WRB; TAIR: AT4G16444.1 tail-anchored protein insertion receptor WRB-like protein; Swiss-Prot: sp|O00258|WRB_HUMAN Tail-anchored protein insertion receptor WRB; TrEMBL-Plants: tr|I3SMP1|I3SMP1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0135800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:19815212..19823260) extracted from Lotus japonicus Gifu genome v1.2.
CTTTACTTTCTCTCATTTCCTTCTATCTCTCTTCCTCCACCTCTTCACACATAAAAAGGAGGTGCCAAGAAATGATTATT CACAATATAAAGAGACATTGATGTTGTGTTTAAATTAAACTCCTTATTTCTTTCAAAAAAATAAATTAATTAAACTCCTT ATAAATAAAAATAAAATTTGTTCTCATAAAGTATAGCCCTATTCAATATGTGAATTTTGTTTTCCTAACTTAAGTTGGTC CATTTTCCCCAAAAAAAAGTACCAGGTCCTTCAATTGCTGTATTCCCTTCGTTCTTTGGTTCGGTACCACTGTTCCCAAT CCCAGGTAAGATTTGTCGTTAGCTTTCTTCTTCAAGTGTTGATTCCAGTTTTAGATTCGTAAACTGTTGTTATTATTCGA GTTTTGATTTTAATTTTTAGGAACCTACTACTGTTCTATTTGTGACTCTGCTTGCTTTCTGGTTATATTTTGATTGCTTC ATGCTTTTTAGTTCTTCTAGTATGTCAATTAAATTTGTTCATGTCTTCTTGTGTGCATTTTTAATAGGAAAAATTTGTGT TTCATAGGTACTTTAATTTAATTTTATTATATATCCAGGGTTTTATGTGTGTATATATATTCAGTACATTATCTGATTTG ACCGTCCGGACTCACTGGTTGAGCCTGAATGAGAAACTTTACCAATCCGCTGTTCGGTTGGCTTTGATAACATTGAAAGA AAACAAGAAAAACAAAGCCATATCATAGAGCTCTTTTAAGACTTTAAAATTGAATTTAGGATGGGAGATGGAGCAAGCGA AGGGCATCAAAGGTCGTTAGCAGCTCCTCTGATATTTTTCGTTGTTATCGCTTTTCAATTTGCTTCCCATTGGATTGATC AATTCAAGAAGGTCATCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCCTCTT TTCTTTTTTAGCCATTCTAACAATTTATAAGTTATTCTGAAAATGTTTGTAATACAGTTTGAATGAACTCAATTGAACCA TGTGCGTACTGCATAGTCTATTTCTCTAATCTATAATAGGATACAAAAATTATCTTTATATACTCCTGATTCTAAATTTA ACATCTAAGGGCAATAGTTTTCTCATCTCAAAGCTTGTTTAGTTCTGCGCTTTTAATTTCCATGCTTGAATTTTTCCCTA TTTGTGATGATGGAGCAGGATGACTTCGCCTTAAACCAAGCTTTGTTTTCACTGTGGTGTAGTTTTTAACTTTTGTGATC AATACTTAAACCCATGTTCAAGAATGAAGAAAAACTGTCATGGTTGTGAATCCTTCAATAGGATAGTTTTGAAACTGTTG TAGAGGTTATTGTCACTAATTGTTGAATGCAATATAGAAATAGCTAGGGAGATGAGTTCTTGCGCATATAAACAACTAAG GGCATTCATGGTAAATTTCTTGAGGCTCCAATTTTAATTCACTACTATTACACCACAACCACATATATTATTTTATGATT TTGCTTTGGTACCTTATCTTATGCCAATGACAAGAACGCTTAGGCAAAGTGACATTCAATGCCTATCCATAACAAAAATG TGGAGTGTTCATGAGATAAAATTGAACCTTTGCATGAAGCCCCAGTAATTGTATACTCTGTTTCTACCATAATAATCCAA GTGCTTATTGCCTTTTCCTGTGCTTGAAAAGATATATCCTCACATTGACTGGTGGTTATGATTTTAATGTCTTTGAGCAA TATGCTATTGCTTCAGAGTGGAGATAATGGAAAAGAAATTCAGTTGCGTGGAGAAATAAAACAACTTTTGAAGGAGGCAA ACTCACTGTCACAGTAAGTAACTATGCTTTAGCCACTTTCTCTTTCCTGGTAAAGAAATGGGTTTTTTCCTTTAGATTCT AAATTCAATTGCTTGTGGTATTTTCATATTTATTGTTGTTTTTAATGATTTATCAAACGCTTTTTCTTCAAAAGTTGAAA CTGCCGGCTTTCTTCTATGTTATCACATTCAGCACTAGAGTTTTAATTGCTCAAGCATTTAAGCTATGTTTGGATTAATG GAAAGGGATAAAATGGAATGACATTAGTTGCCATTGTATAAAGCAATGTGGAATGGAGGGTAGCTTGATGGAATCTATTC CATTCCATCATACCTTTACTTTTCCTTCCACTAATTTGGGGTTGACCGGTTGAGCCAACTTATTATTTAATAATCTCTTT ATCATTCGGTTTAATTACGAAACAATGAATTAAAACATTCCTAATATCTATCACAAAATATCCAAACCATGGTATATGGT TATTTATTCCATCCCTTATTTCATTTGTTAGTAGGTATCCAAACAAATCCTTAGTATGTTATTCTATCAAATGATGGAAC CCCCACTCCCGTGTAAAAGTACCCAAAAGCAAGTATGTAGCAATCGTCGATTCAGATTTGGTTAAGCCTTTTCACGTGTG ACTAACTTTATACATGGAACATTTTACAAGTTGTAGGGTTTAAGCATAATTTAGCTTAGAGAAGTTGATATGCCTAGAGA AATCTATGGGATATAGAACTTTAGCTTAGTGGTGAAGGAAAGAATAAAGGCATTACAATTGAAGCTAGAGTAGGAGAGGG AATAAGAGTTTGATTAAAAGTTGTATAGGAAGCGTTAGCTAACTAAAACGGTTAGCCATCATTTTGGTCTTGGGTATTAA TATTTTAAAACAACAACAATCATAGATTTCTACCACCAGATGGGTTTGACTATATGGACCGAAAGATGCTATTATGTTTT ATCATAATCAATTCTTCAGAGAGGCCATTTAAACCTAAATCTTTTAAATGTCTTCTTTTAGAGTTCTTTCTTTTTAAATG TTTTCTTATGGAGTTCTTTTCGGTCTTCCTTTACGGAAAGTTATTTGGCTATCCCCCAATTGATCAACTCATCAAACTAC AACTCGTCAAACTACGGCTACTATTGGTCTTCTTCCAAAATGTTCAAACCCATACGCTTGATTCTACCATCTTTTCCTTG ATAGCTCTGGCTCCAACTTTATTTCTAATACATTCATTCCTGATCTTATATTTTTTATATCATTACTCATCCAGCGAAAC ATTCTCTTCTTCACAAAACTTTACCTTCTCGTTTGTTGACCCTTTCTTGTCTAATATTCAATACCACAAAGCATATTGGT CAGCCGTATTGTATATTTTTCCTTTTAGCTTGAGAGTCATTATTCTATCATAAATAGCACCTGAAACATTCTTCCATATA ATCCACTCAGCTTGAGTCCAGTGTTAACAATAACAAAAGTCTTTTTCCGCTTGATCCATTTTGTAAAGCTCTGACCAAGT GATCTGGTGACACTTGAATCACCATTTATGTTCATTACTTGAATTTTGGAAATTTCTTTATGGAAATATTTAAATAGCTA TAGAAATTTCATAAGCTTATGTCTAATATGAACTTTGAATTTCATGTGTGTATATTTGTGAGAGATAAGAGTGCATAAGT CATTTCTTTGTCCTCTCAGGCCATCAACCTACGCACAAGCAGCAAAACTTAAAAGACAAGCAGCTGCGAAGGAGAGGGAA CTTGCAAAATGTGAGTTACTTCTCTTGTAACTCATTTTACATATTGCATTCTGTATAAATGTAGATTGACAGATAACATA TGTACAATTTTTTGTTTGCTATGAAGATAAATTTGTCCAATGCTTAAATTGTAAAAGTTTTAGCTCCAAATGTGTTTGAT TTTGGAAGCAACTACTAGGACCCAAAGATAAGGCACAAATTATTTATGTCTTTTTAAAGAGATAATAATATTAAAGAAAA GCTTTGTGAATATAAGCCTTTTAAACTGATCCTCTCTGTGTTTTTCTAAGGAATGTTTCTTTTTCACCCATGGAATGGTA GGAGAAGTGGAGAACCATCACTAGCTTAGGCTATTAATTTGTTGTTTCTTACCCTTAAACTGGCTTTTCTTTGTTTTGGT AGGATTTATCTTTTAACTTGAGGGAGAGATAAAGGTAGTCTAAAGTCTAAACTAAAGATAATTAACAGAACTCAAGCAAT CTCTACATGAAGTTCTAAACTACAAACCAAAATACACATCAGTCCTTGAATAAATCAACCTAACTTGATAATCAAGAAAT TAAAAAATAGTAGAAGTTCCCAAACAGCCCAAAATTTTAAAATATCTAATCAATTTCAAGAAGAAAAAACACTTAGAAAA TCCAGTTTTTTTGGTCCACAATTCTACATCACAGAAAGGTATCTTTCATGGGAGGCAATCTCGCTTGATCCGGGTAGGAC CACTATGGGCTATAAAGCTTCCCTCTGAGTATTTAATGCAACTGCATACCCAGCGCTCGAACTCAAGTCATCTGGTTGAG CTACCCCCACTATGCAACTTGTGTGCTTTGATTTTCTTTGTTTCATTAGTCTTGTTCATCTGTTCTTGCTTTGTTCTTTG CTCAAGATTTGCTCCTCATCCCTTTTTCAACACATTTGTTCGTAACACAAGATACTGCTGCATTTGTGTGTGTGTGTTGG GTACCCACACTTATCTCAAGACAATATATATCTCATTTATATCGTGCAACATAAGAGTGCGATTGTTTCACAAGATGCTA AGAATTTAATCTGTTCAACTTTTATATCAAATTCCTCATAGTTTCTGAAGTAGGTGCATCTGAGTTAATATTTTGATACT TGGATCCTTAGGTAAGTTGAATTACATGCAGCAACAGCAGTTATGCACTATTTGTGCTTGGCATTTATAAAAAAAAGTTT AATATGAAATCCAGGTCACAATTTACATGATAAGGATACAGCTTTGTATTCAAACGTTCTGCTCGTCTCAAAGGTATGTC ATGATATAACATTGGTTTCTAAGTTTTACATATTTTCTGTGTGGAGGCTAACAAGATATGTGTGGTTGTGCCGTGTAGGT TTTAACATATTTAATTCTGCTCATCTGGTTTTGGAGTGCTCCTGTGGCTAGCATATCTCAACAACTTGTGCAACCATTCG GTAATGCAATTATGATTGATTCTTCAATTTATATTTACTTGGTTGCAGTTTGCACAATAAACTCCATCAACCATTTGGAT AAGACTTGCCTGATTTATTGGACTGCTATACAAATACAAAAAATCTGCCTTTCTTATTTTTTTGGACTCTGATATTTTCT TCAATGAAGACCTAGAAGAGGAATGACGCTTATGACCCCTTATGCTTTTGGTTGAAAGAAGAAACCACTGAGATTTTGGT TAGTATTCTGAACTTATTTTACGCTCTTTTGCAGGGAGATTATTATCTTGGAGGACTGGAGGGGTTCAAAATAACAATAT TATGGTAAGTAATTGCTAGTTTCTTTCCTTATTACATATTAATTTTTTGTTTAAGAGAACTAATATTCAAAGCCAATGCT GCCTATTTTGGTCCCAATCATTGATTGTGCCGATCTCAGCTATTTCTTTTGCATATGGATGAATGAAAATTGGGTCTTAG GGTTAAACCTGAAAACCTTGCCGCCGGTTTAGCTCCGACCGTCGTGGCCAGGTGTCTGTTTGGAGCTGATGTGGAATTTT TTAAAATAAATAAATAACATAATTAATTTATAATAAACCCCCAAATCTTTCCTAATTTAATTTCTAAACCCTAAACTAAA ACTAACACTAACCTAACTTCTACTCCTAATTAAATCAGATCAAAACCCTAATTTTCTATTGATATTGAGAAGTCTGAGAG AGAAAGAAAGTCTCTAATCTCTATTCTCCAACTCTAATTTTTTTAACCATCTTCCAATTTCTTCATCTTCTATCATTTTC TTCTTTTGTCCAACCCCCACCATCCCTCACTCCCATCCCTTACTCCTAACAGCACAACAGCACCCAAGATGGTACACCCA CCACGCTTGCATCCTCCCCACCGCCTGCATCCTCCTACACCCACCACGCTTATTCTAAATCAATCATCGCCAAATAACTG GTGATTTTTATCCTGTTGTGAAATGCTTTGATGGCTGTCTATGACATCAGTGGTGTTTGGCACATTGGGTGAGGATTTCC GAGGTAATTCTAACTCTACCCTCGAAAGCTAGCTCATGAGGATTTCCATAGCTTTATATGGTCTATTTTGGCCTTAGTCG ATTTGGCATATCAACAATGGGAATAAAGAGATGATAATGATACAGTTAGTATTAGATAGTAAATAATAGGCAATTAAATA GAGCCAAAATTTCTTTTAAATAGGACTAGTGATGCACTCTCCCGGGCTTGGTTGGGCATGATTCTTTGAGCCTAGTTATG AAGAAATAATTGCTTTCAACTCGTTGGGAGCTACAAAAATAAGGGCTTAAAAGGAGTAACTATTATCATCATATCATGTA ATATCATGGTAGTCTTTGTTGATGACATATTACTGATGGGGATTGAACATTGGGCATTACAAACCTCAGGAGCTTCCTTC GGACCAAATTCCAACAAATGACATAGACCCTCTGAATTATTTTAGCAATTGAATCTACCTATTGGAAATCCAAATTCAAA CAAATGTAAGCAAAAGTTAAGTGGAAGAAATATTTGGATCTACTTATATTTGCTCAGAATCAATTCTGAATTCTGACTCT CAGAATTTTCTCCCATAGTTGATTATGACTGTAAGAAGTACTTCCAAACATGATGCAATTCTAACCTGCAATTAGGCTAC ACTAGTTTTTGGTCATTTTGCCTCTCAGTTTTATTTCAGGAATAAATTGTTAAATTTTCATATTCTCCGCAGTATATAAG AACTTTACTACCCCCGCTCATAAATAATTTAGCATTAATACAAGAGAATATATGTATAAGTAAGCATCCTATATTTTTTT TAATGTTGTTCAAACTGTTATACATTATTGCAGGTTGGAATAATACCTTGGCTAGTAGTTTGTTCCAGGGTTAGCAGATT TATTTGTAGACTCACCTATGGCAAATAGATTGTCAAGATGATCTTCTAGAATGACAAACTTGCAAGCTGCTTCGACTGGA TTCCTGGATTTACAATTGAAAGAACAAGATGTTACTAGGTTTGTACACATTGGAATTTGTTCTCCCCCCCTCTACAGTTG ATCAGTTTTAGGTGTTGTATTTTTTTTTTCTGCCATTTGTTGTCGAGGCGACATGTAAAATTCATTCTGCATAGGCAAGC AAATTTTTCATATGCTTCTAATATGATATGCATTTCCTCAGCATTTTTTAATTCGATTCTTATATATATATATGAGAGCA TATCAGGTGAGATGAGTGGTTTATGGGGAGAGATGAGAGGAATAATTAATAGCCATTAGATTAAAGTTTACGGTTCAGAT TAAGTTCCACTCTAAGAGTGCACGTGACCCCTAAACCACTTTATTTTTTTCTCTCTCTCCCCGTCAAAACTCTCTTCTCT CTCTCTCCTCAATAAAATCTTCTACTCTCACCACCGTCATTAGAGCATCTCCAATGGAGTCCTTATTTTGGGACCTTAAA ATAAGATATGGATCTTATTAGATCTCACCATTGGAGCTATCCTACATGGCATGAGATCTTAGCAAAAGCTAAGATCCGTG CCTTAGCTCAAGTACTCTCAAATGTGGGATCTTAAATAAAATAATATTTTTTTTTCTCTCTCCTTCAATACCATAACCAA AGTGAAAATTAGGGAGGGAAATAAATAATATAAATATATTGGGTACTGTGGGTCCAGTCAAAAGTAAAATAAGATCCCAA CCACTAGAGTGAAATATGCATGAAGACCTTATGGGTGTCTTAAATCCTATGTGGCAATTTGGGCCCACAAAAATTGAGTT AAGTCCCAAAATAAGTTCCTACCATTGAAGATGCTCTTAATCATCTTCTCCGTCACTTTCAATTGATGGCCATTTATTTG GTATGGAGAATCTCGTTAAACACAGCATATCACTTCCCTTCAGCTCACAACCTTGTTCCCTCTCTCATCCCCAATTGAAT TTGATACAGAACCCAATTGAATTGAATTCAGAATCACTCGGTGGTGGTT
CDS sequence (LotjaGi4g1v0135800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGATGGAGCAAGCGAAGGGCATCAAAGGTCGTTAGCAGCTCCTCTGATATTTTTCGTTGTTATCGCTTTTCAATT TGCTTCCCATTGGATTGATCAATTCAAGAAGAGTGGAGATAATGGAAAAGAAATTCAGTTGCGTGGAGAAATAAAACAAC TTTTGAAGGAGGCAAACTCACTGTCACAGCCATCAACCTACGCACAAGCAGCAAAACTTAAAAGACAAGCAGCTGCGAAG GAGAGGGAACTTGCAAAATGTCACAATTTACATGATAAGGATACAGCTTTGTATTCAAACGTTCTGCTCGTCTCAAAGGT TTTAACATATTTAATTCTGCTCATCTGGTTTTGGAGTGCTCCTGTGGCTAGCATATCTCAACAACTTGTGCAACCATTCG GGAGATTATTATCTTGGAGGACTGGAGGGGTTCAAAATAACAATATTATGGTTGGAATAATACCTTGGCTAGTAGTTTGT TCCAGGGTTAGCAGATTTATTTGTAGACTCACCTATGGCAAATAG
Protein sequence (LotjaGi4g1v0135800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGDGASEGHQRSLAAPLIFFVVIAFQFASHWIDQFKKSGDNGKEIQLRGEIKQLLKEANSLSQPSTYAQAAKLKRQAAAK ERELAKCHNLHDKDTALYSNVLLVSKVLTYLILLIWFWSAPVASISQQLVQPFGRLLSWRTGGVQNNNIMVGIIPWLVVC SRVSRFICRLTYGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 32 | 21 | - | – | |
| TMHMM | 13 | 32 | 20 | - | – | |
| PANTHER | 17 | 170 | 154 | 4.0E-48 | – | |
| PANTHER | 17 | 170 | 154 | 4.0E-48 | – | |
| Pfam | 33 | 161 | 129 | 1.4E-9 | ||
| Phobius | 33 | 106 | 74 | - | – | |
| Coils | 70 | 90 | 21 | - | – | |
| TMHMM | 96 | 118 | 23 | - | – | |
| Phobius | 107 | 129 | 23 | - | – | |
| Phobius | 130 | 148 | 19 | - | – | |
| Phobius | 149 | 168 | 20 | - | – | |
| Phobius | 169 | 174 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Tail-anchored membrane protein insertion into ER membrane | A process of protein insertion into the endoplasmic reticulum (ER) membrane in which a tail-anchored (TA) transmembrane protein is incorporated into an endoplasmic reticulum (ER) membrane. TA transmembrane protein, also named type II transmembrane proteins, contain a single C- terminal transmembrane region. |
Expression pattern of LotjaGi4g1v0135800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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