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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0137200 |
| Transcript ID | LotjaGi4g1v0137200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-isopropylmalate dehydrogenase; TAIR: AT4G35260.1 isocitrate dehydrogenase 1; Swiss-Prot: sp|Q8LFC0|IDH1_ARATH Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial; TrEMBL-Plants: tr|I1MMY0|I1MMY0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0137200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:20167974..20176125) extracted from Lotus japonicus Gifu genome v1.2.
CCGCACCGCTCCTCAAACACCTCCTCACCCGATCCAAACCCGGATTCGGATCCACCGTCCCCGCCTCCCAGCGATGGGTG ACCTACATGCACCGCCCCGGCGACGGATCCCCTAGGGCAGTAACCCTAATCCCCGGCGACGGGATCGGGCCTCTGGTGAC CGGCGCGGTGGAGCAGGTGATGGAGGCGATGCACGCGCCGGTGTACTTCGAGAAGTTCGATGTCCATGGCACGATGAAGG CGGTGCCGGCGGAGGTTTTGGATTCGATCCGGAAGAACAAGGTGTGTTTGAAGGGAGGGCTTGTTACTCCGATGGGTGGT GGTGTGAGTTCTCTCAACGTGCAGCTTAGGAAGGAGCTTGATCTCTACGCTTCTCTTGTTAATTGCTTCAACTTGCCTGG GTTGCCCACGCGCCATGACAACGTTGACATCGTTGTTATCAGGGAGAATACTGAAGGGGAATACTCTGGGCTTGAACATG AGGTGGTTCCTGGCGTTGTTGAAAGCCTTAAGGTTCTTACTGTACTTCCTGCTGCTGATGCTTCTAGTTTTTACTCTAAT GATTGTTTTGGTGAATGTTTTCCATTGTTTCTGATTTATAGAGGGTTATTCAATTCATGGTGAACTTAGGCTTAAAATTG TTTTGCTGAATGTGTTGTATTATTTTCTGATTTCTGGAGGGTTATTCATTTTATGGGAAAGTTAGGAATGATGTGGTTGA AACTTGAAAGGAACATGTCAAATGACACTGTAGACTGTACTTAAGGATTTATTACCATGTAAAAATCCCCCAAGCTCTTC TGAAATGACCCTCTGCAAAGTTATTTAGCTCATTCATCAAAGAAAAGAAAAAAAAATATTAACTTTTGTTCACAGAGAGA AAAGAAGAAAGGAAGAGGTAAGAACACTAAGAAGAACACTGAGAAGAGCTCAAGTGGTAAGAGTTAGGGACATAAGGGTT GGGTGGGATGAAGGGTGAAGGGTCCAGGGTTTGAACCCAGAGGAGGACTAATTTACTAACATTACTAACAACTAACATTT GCCTATAAAAAAAAAGAACACTAAGAAGAAATGTGTGTTCAGATTGTTTGATAGTGGGTAGTTACTGGAGTAGAAATAAA TAGATAAGCTTAAATAAAGCTATTTTTTATCTTATGGGCCAGGTTAATATGGATAAGGATAAACTTAAAATATAACTCAC AATAAATTGTATAAAATAACTATTTGATTTAAAAAATAAAATTATTCTTATTACTTCTAACTTGGTAATATAGAAATTGA TCTTTTAAACTTTTGGAATACACAAAATGTCCAACAATTGTCACATCGTTTTTGTTTTCAATTTTTTAATAGAAAGTGAA AAAATAACTTTGTTGTTTTTATTTTTCTTTTTATCTTTGAAATAGGGAATAAAATGAAAACAAGTCGGTATATTATAATT ATTAGTAGATACAAAAATAAAACATTTCCTCAATTCAAATCGTCCCTTATTTCACAGCACCAAAAAAATAGACCCCTTAT TTCCCTTAGAATAGTTCTTTAGAACTTTTTTCGGTTTTTCCCTTTAAATCTTTAATGTACTTAACTGATGAAGTTATCAC TCTTTGATACTGAAGTAGTAAGTATGGATTTATGTTTATGATTCATCCTAATATTTTGCTAGGTAATAACAAAGTTCTGT TCGGAGCGCATTGCTAAGTACGCTTTCGAGTATGCTTACCTGAATAACAGAAAGAAAGTGACTGCTGTGCACAAAGCAAA TATTATGAAGCTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCAAAAAGTATCCTGGAATTAAGTATAATG AAATCATTGTGGATAACTGCTGCATGCAGCTTGTTTCCAAGCCCGAGCAGTTTGATGTCATGGTATGTAAATTTACATTT AAATGCTAGTTCTTCTATCTATCCTCTTTCCTTTAACATATTTGTATGGTAAACACATTGGTGGATGGTCAACTTAGAGC CATCGTAAATTGTGAGACAACGGTGTTTTCATATATTGTTTACATTTTGTATAGAGGTTTGGTGTTTTGAGTTGGCCTTA TTTTTGAAGTTAATGACTTGTATGAGCGGAATCAGCGTAGGAATGAGTAGTGGCAAGCATGACAGTGAATCTAACAGAAG CTAAGTTAAATCAATATTGCTAATGAATTCTGAGGATTGATATGATCATATGATAAGCTAGTTATCATTTTGGTGATACA AGAAGAATATGGATGTCATATTTATTTGTTGTGTTTACAAATAATTGGAAAAGGATTTAAGTGGCCCTATTCTGCTATCT TGGAGAATAATATGTACTTATCTTCATTGTTGCTTTGGTGATGAATATAGATAGGATTTGTAATAATAAATGGTATATCA CTCTTTGACCTTTAGGATATGTTTGAATGGAGAAGTTTGGAGGGAAGGGAAGGGATGGGAGGGAAATCTTCTTCTCTTCT CTTTTCTTTTTTAGATGGAGGAATAAAATGAGAGATGAATGCATAACTTTCTGACATCCATTGTTAATTTTCTGAAGCAT TTTATAATATTCTAAATTTAATAAATTAACTTCGAGCTCCGTTGTCCTTACCTCCATACCTTAGGGGGTGTGGATATACT TCGTTGAATACTGAAGTGATGTAAAATTTGCCCTTCTTTTCTATTGGTTCAAGTGAGATTCATTGCAGGGGGTTGCTTGT TAACTTCAGGTCCTGATGGTTCTGTTCTGTGTAGCAACTTGTCTTCATAATTTATTTTTGATTTGTAGTCAAATAGAGAT ATAGTTGAAGTTCATGCATGCTGTTTCCTCTTTCTAGGTGACCCCCAATCTTTATGGAAATCTCGTTGCAAATACTGCAG CAGGCATTGCTGGAGGCACAGGAGTCATGCCAGGAGGTATGTTGTTGATTGCTCATTTATTGCAACTGTAGAGCTCTCAT CTGATCTGATTATGTTACCTTTTTAATTACTTCTTTGTTTACTTATACGATGTATCTGATGTGTAAATAATGTTCAGAAC CGGGAAGACTAGGCTCAGAGTTTTAATTGGGGAGGGGGGATAAACTTAGCAAATAAATGCGTCTTGTATACTTTTTCGTT TTGTTTTTGAAAAATATAATATAAATATATTTAAATCACCGGAAAAACCGGAGGAACCTTATACAAGGTGCAAAGAAAAG GGGAGACACTCCCAACCAAAAAGGGGCCAATGAATGCGTCTTGTTGTACTATACTATTTGATCATATAAGTCATATATCA ACGTAGAAGTTCACTTTCCCTGAGGAGTCTAAGGTGACTCATAAGTTACAACATAGGATATATCAGGCCTAATATTAGTC AAATAAAGCAAACGGCCAATCAACCTCCTTTCGGTAGTGCAGTCATGAACAATAGCACCTAATTCTTGTGTAGTTTATGA GATGGATCTGTTGGAGTTTGAACTCATTTGGCTGCCATCAAAATAGTGTCTGCAAATAAATCCAGCATTTATTTTCATTG ATACAGAAAATCTCTTTGGAGGATATAGTTATCTCCATCACGAGGAAGAATTTGAGACTTTCTTGGTCTTTGATGCTAAA TTTGGCATCCAAAAGGTATCTCATTTGCTGAATTTCAGTGATTTCATTCCCAGGTAGGAGAAAATCCATATAGGTTAGGG TTACTGTAACACTTATGGAAGAGGACTTGGTAAAAAGTGAATAATCAGCCTTGGATTTTGTGTATCCAGCAATTGACTGG AACCTCAGTAATTTAGCATTCCATTGCCACCTTGCCTGATTCAAACTATAGAGAGATTTGGTGAGTTTGTAGACCAAATT GGGGTGACTGCGTTGAAGGCAAAGAGGAGTCTGCTTGTAGACTTCTTCATGCAAGTTACCATGTAAAATGCTGTGTCGAC ATCCGCGGCAGTTTGTGTGTACCACTTTGCTATTAATCTAGTCTTGCATCTTTCTACACTCCCATCTGCATGGTATTAAT TTGACCTTAAAGACCCATTTACACATTATTGTTTTCTTTCCTGGTGTCAAACTTCTGAGTTCCCACGTTCCATTATCATT TAGGGCTGTCAATTCTTTGTTCATAGCATCCCTCCAACATTCAATGTTGAACAGCCTCCTGATAAGTCTTAGGTTGTGAC CTTGGAAACTCGTTAGGAGAAATGTTTTTGTGAAGTAAATAAATTGTCATAGTTGACAAAATCAGATGGGTACCTGACAT TGGGCTGATGGTGGAGCTGATGAGGGGGCCTGATTACATTTGGTATTCAGCCAAGTATGCTGTAGCCCTTCTGCTTTGTG ACCTTCTCATTGGAGGATTTCTATCATCAATTCTGCCAGAGATATTATGTTCATAAACATCTTCAGGATAAGGTGCGGCA GGTGGATCAAATATGTTTTGATACTAGTTTGATTAGCTGGCTGGGCCGCTGGGATGTAGAGTAGTAGTGTGTTTGACATT TATTAAGAAAATGAGAAATTTGTTCAAAAATGCTACATCTCTAAGTAGGAAAATCTCCTTTGTACGTAAATCAAAGAGAA CCTTTCGTACATATCCTCGGAAAAAAAAACACTGTGTGGACCTAGCTTCTAATTTCTTTCTATGAGAATGCAAAGTTGCA AGAAAAAAAAACATCCAACATTCTTAGTGAGGAGCAATCAGGTAAAGTACCATAGCTTATTTAATAGGGCCACTTATTTG ACAAAAGGGTGGAAGATTACCTACCAATGAGAAAGATGGCATGGCTAACAGCATAACTCCAGAAATATTTTGGTCAGTGA CTGAAATAGTAGGGCCCTATCAACTACACTATTTTGTTGAGAGGTTTCTACACCAGATATTTCATGAATGATACCTATCA TGAGCCAACTACCCCAAAAGTTTAAACTATTTGGTGAAGACACATGAAGGATTTTATAGTATATTTATAACATGCCCCTT TACCCAAGAACGCATCTACATTGTGTTGAAATTCAACTTTTCTTTATTAGAATAATGGGGTACAACAAGGATCAAACTAC AAACCATTTGGTCATAGAAGCTGTGATGTGAGTGAAACCATGTCAGTAACCAACTATGCCAAAAGTTTAAGCTATTGGGT GACGCCAAAATGATTTTCTATTATATCTCTAGCAATACCCGGAATAGAAACCAGACAATCTAAAGTCCATAGCAATGTCA GACCTGCTAGTTTTAAAATTCTTACCAAATTGTGTTTTAGCAAACTGAAGGTATGAAAAACGGTAGAAAGGGGGGGTTTG AATAACGTTTTCAGTATAAAACTTCCACCTTAAAGACTTTGACAAATCTTTCGAGAACTTAAGTGCTAAAGATAAGAGAT AGAAAAGCACACAAGGATTTTATCCTGGTTCACTTGATAAATCACTCAAGCTACTCCAGTCCACCCGTTAAGGTGATTTC TTCCTTCTTAGAATGAAGGCAATCCACTAATCAGGTAAGAGTTACAACTGCACTTGAAACCTACAAGTGACTAACAATTA CACTGACTTAGCTCACACTAAGATTCACTCTCTTAGTCTTCTCTAGGATCCGATCAACCTTGATCTCCTAAAGGAACTAA ACAAACTGTTTATCAAAGAATTGTTTACAAGAGATTTGCTTCTAAAAAGCTAATAGTAAACTCAATGAATTTCAGATGAA AGAAAAACTTAGAAGAATTTAAGATTGTCTTGCGTATGTGAATGCTTCTAGCCGTTTCTTTCAGTCTTCAGCCTCTTTAT ATACTCCAAGGATTAGGGTTGAGCGATGCATGGGAAATGCTACCGTTGGAGGGCAGTTCTGGAAAATCCAGCTTCTGCTG TGGCTGAGAACGTTAGGTAGGTCGTCAGGAAGGTACAGTAGCTTTTGTACTTGGATAGCGACGCGACCTTTAAACCTAGG AGACTTCTGATCAGGGGAATGCTTCATATTGGAACTTGTGAAGCCGGTTGATCAGAGTCAGAGGGAAAGCACAGATCCTC TGACCATTGTATCTTCTGATTCTGAACTCAGAGGGAAGAACATGGCCTTCAGAGTTTCTTGCTTCTGGACTTCAGAGTTT CCACTATTCAGCTTCTGGATCTTCAGAGTCTTCTACACCATCAGAACATCTGAACCTTCAGTGTTTCTTGGTTATCAGAA CTTCTGGATCTTCAGAGCTTCTAGTGACTGAGTCCACATCAGAGTTTGTATAACTTCAGAACTTCTGAAGCTTTTCCACT GTTCATACTGAACATGGTGAATGCGAAAGCGTTGCTTGGGTCACTCTTTATACACAGTGCTTCTGATTTGTGTGAGATTG AGTTGAGGTCAGAACCTGCAAATAGCACACTCAGAAAATACGTTAGAGTACCACAATTGTTCATATCAAAAGGTTAACTT GTAATCATCAAAACATAGAGTTGTACTACTAGATCAAAACTTGATCTTACACAAACGACACAAAAGACCTGTGAACTTGA AATATTCAGGGAAGAATCTGATTTGGGTAGGGTTTTAGTATGCCTGTTGCCATCCTAGCTGCACCCATCATCCTTGAGGA TGTCAGGTCTTGTATTTGACTGCCAGAATTAGAGAAAATTAGATTACCATGGAGTGATTGAGCTAGCCTTGAAACTGAAA TTAAGTTGAATATGAAGTTAGGCGCTTAAACACATCAGTCAAATAAGTTTGATCTGAGCCAGAGTAATTTGCTACCACTT TGCTCTTATCAGGGAGCTTGATGAAAATAGGCTTGAGCTTTTTAAAAAGAACCTAATTGTGACATGTAATTGCATATATG TACCGGTTGCTCCTGTATCAATAATCCACTCTTGTTGATGCTTAGTATTAAAGTTATGAATTGAACAAACAATACCTTAT TAGACATAGAGAAGAGCAAGAGAATTGAAAATTTTGAACAGATAATGCAGTCTCCATCCACAGTACACTGACAAATTTAA GAATCCAAAGCCTGATTGATCCTGGATAGTACCATCTTATTGCATCTATTATATACTGCAAAGGTAGTATCGTCCACCAA AGCCTGATCGATCCTGGATAGTACCATCTTTTTGCATCTATTCTGTACAGCAAAGATAGTATCATCCACCTTAGGATTGG GAAGACTTCCATCCACAAATTGCAGCTTATTTTTCGACTTGAGTGCCATAGCCATGACTCTTGCCCATAAATGATAATTT TCGCCAGTTGGTGGATAGGAAACCAAAACTGCACCTGGATTCTCATGGGGATGCCAGTAGTATGGGCTTGTGGGGTCTGC TAGCATATTCGCCAGTGATATGCTTCATGAAAGAATTAAAGAAGCCAGAATCAACACAGAAAGCAAAACTCAGTCAACTG AATCAAGTTGCTCCGAAGCAAACAAGCAAGAATTGGAGGGAACTCTGATCAATCCTCAAAGAGAACAATCAGCTCTTATG CAATAGAAACCAAAAAGACAACCAAAAGAGGGGGATTGCAGAAAGCCATAGTAGCAGAGCTCTCTTCCCTTAGAGAGCAA AATAGAAACTAACAACTTAGAGAGGCATCATAATTACTGTAATGATGCATTGAATTCTCTGATTGTATGTACAATGAGGT CTTAGCTTATATACATGGAAGATAATTACAACTTCAACAAACTAACATAATTAACAAATTAACTACTTACAGCTGAACTA GTCAACTTGCACTCTAACTAACAACGGAAAGTAGAACTACCAATAACTGAAGTCAGTTAGTCTGCTGGTGCCTTATCATA TTCAGTACACATACCCATGCTTTCCTAATAATCGAGATGTTTTGATTATAGAGAAATAATTTCTTTATCCTCGAATTATT GCTTGAGAATGACAAACCATGGATGCCATTTTTGCAGGTAACGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGAGCTTC TGCAGGAAATGTTGGTAGTGATAAAATATTGGAAGAAAAGATAGCCAACCCAGTTGCGCTTCTTCTCTCATCAGCTATGA TGCTTAGGCATCTCCAGTTTCCTGCATTTGCTGACCGTTTGGAAACTGCTGTGGAAGGAGTCATTCTAGAAGGCAAATAC CGGACAAAGGATCTTGGAGGGACAAGCACCACCCAAGAGGTTGTGGATGCAGTGGTAGCTGCTTTAGACTGA
CDS sequence (LotjaGi4g1v0137200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCACCGCCCCGGCGACGGATCCCCTAGGGCAGTAACCCTAATCCCCGGCGACGGGATCGGGCCTCTGGTGACCGGCGC GGTGGAGCAGGTGATGGAGGCGATGCACGCGCCGGTGTACTTCGAGAAGTTCGATGTCCATGGCACGATGAAGGCGGTGC CGGCGGAGGTTTTGGATTCGATCCGGAAGAACAAGGTGTGTTTGAAGGGAGGGCTTGTTACTCCGATGGGTGGTGGTGTG AGTTCTCTCAACGTGCAGCTTAGGAAGGAGCTTGATCTCTACGCTTCTCTTGTTAATTGCTTCAACTTGCCTGGGTTGCC CACGCGCCATGACAACGTTGACATCGTTGTTATCAGGGAGAATACTGAAGGGGAATACTCTGGGCTTGAACATGAGGTGG TTCCTGGCGTTGTTGAAAGCCTTAAGTTCTGTTCGGAGCGCATTGCTAAGTACGCTTTCGAGTATGCTTACCTGAATAAC AGAAAGAAAGTGACTGCTGTGCACAAAGCAAATATTATGAAGCTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGT TGCCAAAAAGTATCCTGGAATTAAGTATAATGAAATCATTGTGGATAACTGCTGCATGCAGCTTGTTTCCAAGCCCGAGC AGTTTGATGTCATGGTGACCCCCAATCTTTATGGAAATCTCGTTGCAAATACTGCAGCAGGCATTGCTGGAGGCACAGGA GTCATGCCAGGAGGTAACGTTGGGGCTGAGCACGCTGTGTTTGAGCAAGGAGCTTCTGCAGGAAATGTTGGTAGTGATAA AATATTGGAAGAAAAGATAGCCAACCCAGTTGCGCTTCTTCTCTCATCAGCTATGATGCTTAGGCATCTCCAGTTTCCTG CATTTGCTGACCGTTTGGAAACTGCTGTGGAAGGAGTCATTCTAGAAGGCAAATACCGGACAAAGGATCTTGGAGGGACA AGCACCACCCAAGAGGTTGTGGATGCAGTGGTAGCTGCTTTAGACTGA
Protein sequence (LotjaGi4g1v0137200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHRPGDGSPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKFDVHGTMKAVPAEVLDSIRKNKVCLKGGLVTPMGGGV SSLNVQLRKELDLYASLVNCFNLPGLPTRHDNVDIVVIRENTEGEYSGLEHEVVPGVVESLKFCSERIAKYAFEYAYLNN RKKVTAVHKANIMKLADGLFLESCREVAKKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTG VMPGGNVGAEHAVFEQGASAGNVGSDKILEEKIANPVALLLSSAMMLRHLQFPAFADRLETAVEGVILEGKYRTKDLGGT STTQEVVDAVVAALD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 335 | 335 | 2.8E-229 | – | |
| PANTHER | 1 | 335 | 335 | 2.8E-229 | – | |
| Gene3D | 2 | 335 | 334 | 2.5E-122 | – | |
| TIGRFAM | 8 | 333 | 326 | 2.8E-150 | ||
| SUPERFAMILY | 11 | 334 | 324 | 1.17E-106 | – | |
| SMART | 11 | 330 | 320 | 1.1E-137 | ||
| Pfam | 12 | 330 | 319 | 3.8E-77 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Isocitrate dehydrogenase (NAD+) activity | Catalysis of the reaction: isocitrate + NAD+ = 2-oxoglutarate + CO2 + NADH + H+. | ||
| Biological process | Tricarboxylic acid cycle | A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. | ||
| Molecular function | Oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0137200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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