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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0145600 |
| Transcript ID | LotjaGi4g1v0145600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cadmium-induced protein AS8, putative; TAIR: AT4G19070.1 Putative membrane lipoprotein; Swiss-Prot: sp|P42735|CDI8_ARATH Cadmium-induced protein AS8; TrEMBL-Plants: tr|I3S7C4|I3S7C4_MEDTR Cadmium-induced protein AS8, putative; Found in the gene: LotjaGi4g1v0145600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:23531113..23534915) extracted from Lotus japonicus Gifu genome v1.2.
AATTGAACAACCCCGATGACCGCCTTCTATCCAAACAACATCAGAAAAGGTAGATAGATGCCTTATGAGCTAGGTAGTCG ATACAAAAATTTATCTCTCTACAAACAAAAGAAAGATCAAACAAACTAATGTTAAAAATAGAGGGGTTGCTACCATTTTC TTTTCATTGGTATATCCGGAGTAGCTAGAATTCACGGTCACGGTGAATACACCAATTGATTGCAATCTGACCACAAGTTT ATAATGGTAGACTAGAAATGCCTATGCTGTGAACTTCACTTGTACTCTCTTTGTTAATACTTCATTATCAACTGCCATTT TTTCTTCATCGCTATCAACTATGCTTTCTGGCCTTTTCCTTTCTTTCTGTATAGGCGTCGCTGTAGACTGTACCTCTCAA ATCCGCACAACTTCTTCAAACCCTGGAAGTTTTCTGTTTCTGTGAGTGAAGGTAAAAGCAACTGAATCTCATTCTCCCTC GTTTTCGTTTCATCAGCTACAATTTTAGTGCCGTTTATTCATTGAATCATTTGTTTGCATCTATGTATTTGAATTTTGAT TGCTTGTCTTGGTCATGTTTATGTTGCATTTACTGAAATAACAGACAGATGCAGATGATAGGGTTGCAATTGCGTCACAA TACGATTGCCAGAGACTTCAAATACTCTAATAATGCGGCCACAATTGCAATCAAACATTTCCTTCATTAAAACTCAGTTT TCACACTCATGATTCAGTGACTACGAGCCCGATTGGATGGATACCCGTCAGAAAGTATGAAAATTGGAAATTAACGTGTC CCTGAATCACTCATACTTTTTGATTGGTATACAACCAGCTCTACATTTTTCTAAAACTATATATGCTTGATTGCTCACAG CTTTACAATTGATGTCATAGTGTTGTGATAGATAGACTTGAGAGTTGGGTGCTAGTTAGTTTACTATCTTCGTCTAAATG TTTAATCAGGGTTTACCAGCTGACTAGAGGTTTACCATTTTAACAATTTTACTGTGAGTGATTTGTCATTTACTACTGTT CACAGGCTCTGATGATTATAAAAGGATTGTTTAGGAGATATGAAAGGTGGAACCCTGTGCATCCAACTTATGGAGCCTTT TGGGGAATGGGTGTGGGTGTTGGTTGTGGTGTAGGATGGGGTCCGGGATTCGGACCTGAAGTGATAGGCTATGTTGGAGC TGGTTGTGGCGTTGGATTCAATGTAGGCATCACTCTGGCTGGCTTCGGAATTGGCCTTCCAGCTAATTTTGTTTTTGAAG CTCCTTATAATGGTAAACCTCTCATCAACATTTTAAACTTTTTGTCTGCCTTTGGGCCGCGTCTTAAACTGATGCACATT CATGTGACTTGTTTAAATCCAGCTATTGTGGCGACAAAAAACTCTGCAGTGAAGTTAGCACGTTCCAATGGTCCTCTTTC TGGTACACACATGCCAGGGGATATCTGGATTAGAAATGTACCTAGTGTATCTGACTTGCAAAGAGAAGCCAGTGAAAAAT TGTTTTGCTTTAGGGAAAAGTATTTATCAAACAAGGGAACTGATTTCTTTGACGTGAAGAATAGATTGCCTTTGTTCTCG TCTGCCTGTAAAAGTATACAAGCATTCCATAACCAGTTGCTCTGTTCTCGTAAAGGTATTATTTTTCTTAGAAAATCAAA TTAATGTCTCCTCTATTACCCAGCATTTGTCTTGTATAAATTGTTTGCTCTCCTTTTCATCCTTTTAACTTATTGAGTTT GCTGCCTTCATGATTTATATGCTTATCTTTATTTCATGTGCATTTTCTTCCTCTCATTTTAATATTTTTTTTTGCACATT CCTCTCATGAGCGTGATTCTAGTTGCAATTTTCTATTTCCTATATGAAAGTTTATGGTTTGACATTCGACAATTCAGTCT CAAGGTCCTAAATTGCCACACCTGAAATGATGTCATGATATGTAGTTTAGACCCATCATTTTCCTACAAAATCTACTTGA CTGACATTTGCTTGCCTCTAGACATTGAGTAAATAAAGCCCATCTTATAGCGTATGTTGTATGACTTATCTTTTTTCTAT GTTATTAGAGATCTTTGATGTACTACTGTCAGTTGGATAATTGGCTAAAAACGTACAGGATAAACTGCCTGTCTGTTATT CAATTCTGGGATGTAACTATCCCCAATTGGACTTGAGAATAGCTGCCCCTCACCCCCTCCCCCCTCTCAAATTTTATTCT AACATGTTGGGGGATGTGAGCTAAATTGTTAAGTACTGATATCAATGAATACACAGGCAATTTGTTACTCGTAAAAAGTT ATATCTTTGAACATATCAGAGTATCTTAGGCGATCTCTTAAAGATTGGTTTCCATATGCCCTGAACTTCATCATTTATTT CCTTATTTAACTAGGATTGCGAGTCTAATAGAAGTATAAATAGAGATAATGTTGTTTCTTTTGCAATACGTTCAAGTGTA ACAAGTCCTGTCATATCAAGTAAATATCAAGTTCAGAGTATTTAGGCTCTGTTATCTCCTTTCCCTCTTTTGATACCTAA AACCCTAGAATTTCAAGAATTACCTGTGACAATGTCACAAAACTCACCCACTGCTACTAAATATATGCTGCTATTTTCGC TTTGATGTTTAGGAAACTGGAGTCATTAGTCAAAATAGTTTTTCTATGATGGATATGCCTAACTCAAAATATAGATGACA ACTTCCCATGGACAGTAGCTAAAGGTTTTCTCAGCATGATGTCTTGATTTGTAATGCTGAGGATTGTTTGATGTCATAAA CTTCATTCCAATTGATATTGTTTTATTCTATGCCCATTTTGTTACCACCATCCCCCTCCCAAAAAAAAAAAGGATTTTCG TCCCATTGGAGCGGAGTGGCATGTGAAAGTTTGGTTTCTTTAAGAATTCTTCTTATCGAAATAGTACAAATATGAGTACC TTCTGTCAGAATATCATGTAGATTGTAGCATCTAGTTTGAGAGAAAGCAGTACATTATTTGCAAATGGTAAAGGTGGTCT TTGGATGATCCCTTGCACTATTTTCCTTCAATATGTAATTTAACTACTAGCTGTTTTTGAAGTAAACTTGACGTTTGCAT CTCTTATTTTGCAGAAAAAGATTGATGACTTCCACCATTATCAGCTTGGTGGTTACATTTTGATAGACCTCTCACTTTTC TGTTTGATAGATTTGGAACCAAAGATCCTATTTTTGTAGTGAATGAGATATCATATTATTATACTCTACTCCCTCTCTCT CGACAAATTCAAGTGTGTATGTATGTTCCTGTTTTTTTTTTTATGTTTCTTTGTAAAATCTAACCCAATAAAACTGAGGA GGCCCTCCGGGCTAGAAAGTCAGCGACACTATTGGCGGATCTACGAACAAATAAAACATCCATGTGTGTAAAAGCCAAAG CTAAAGTGCGACAGTCCGCAATAATTAAATCAAGGTATGAAAAGCCTCTACTACGCTGTCTCTACCACTGAAAGAACTGC AACGCATCCGTCTCAAAACATAGTGGAACCCAAGATTAAGAGCAAGACGCATTACCCACCGCAAAGACGCATTACCCACC GCAAACAAAGAGCCTCCGCTAAGCCCGCTGATTGCATCATGACCGGGGCTAAATTGCATAATCACTAATTTTTGTGCATA TGGTGCACAAAATGTTAGTTAACAAAAGAGATGTAACAAGTCAGTAGACAGACAACCATAAATGAGTAACACTTGATCAT AGTTGAAAAAAAAATTGATTACGAAATTTATCCGCAAAGCTTA
CDS sequence (LotjaGi4g1v0145600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTATAAAAGGATTGTTTAGGAGATATGAAAGGTGGAACCCTGTGCATCCAACTTATGGAGCCTTTTGGGGAATGGG TGTGGGTGTTGGTTGTGGTGTAGGATGGGGTCCGGGATTCGGACCTGAAGTGATAGGCTATGTTGGAGCTGGTTGTGGCG TTGGATTCAATGTAGGCATCACTCTGGCTGGCTTCGGAATTGGCCTTCCAGCTAATTTTGTTTTTGAAGCTCCTTATAAT GCTATTGTGGCGACAAAAAACTCTGCAGTGAAGTTAGCACGTTCCAATGGTCCTCTTTCTGGTACACACATGCCAGGGGA TATCTGGATTAGAAATGTACCTAGTGTATCTGACTTGCAAAGAGAAGCCAGTGAAAAATTGTTTTGCTTTAGGGAAAAGT ATTTATCAAACAAGGGAACTGATTTCTTTGACGTGAAGAATAGATTGCCTTTGTTCTCGTCTGCCTGTAAAAGTATACAA GCATTCCATAACCAGTTGCTCTGTTCTCGTAAAGAAAAAGATTGA
Protein sequence (LotjaGi4g1v0145600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIIKGLFRRYERWNPVHPTYGAFWGMGVGVGCGVGWGPGFGPEVIGYVGAGCGVGFNVGITLAGFGIGLPANFVFEAPYN AIVATKNSAVKLARSNGPLSGTHMPGDIWIRNVPSVSDLQREASEKLFCFREKYLSNKGTDFFDVKNRLPLFSSACKSIQ AFHNQLLCSRKEKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 32 | 32 | 5.0 | – | |
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 171 | 171 | 2.4E-71 | ||
| Phobius | 20 | 38 | 19 | - | – | |
| TMHMM | 20 | 37 | 18 | - | – | |
| Phobius | 39 | 43 | 5 | - | – | |
| Phobius | 44 | 69 | 26 | - | – | |
| TMHMM | 47 | 69 | 23 | - | – | |
| Phobius | 70 | 174 | 105 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0145600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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