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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0146300 |
| Transcript ID | LotjaGi4g1v0146300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CobW-domain-containing protein; TAIR: AT1G80480.1 plastid transcriptionally active 17; Swiss-Prot: sp|P24203|YJIA_ECOLI Uncharacterized GTP-binding protein YjiA; TrEMBL-Plants: tr|A0A072U3B1|A0A072U3B1_MEDTR Prli-interacting factor L-like protein; Found in the gene: LotjaGi4g1v0146300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:23609927..23612542) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCACAAATTAAGCAAGCTAAATTTGGATCTGTTGACATAGACTTTGTTCTGGGGGTAGGAGGATATGATCTTCAGAG GTAATAGGCATTTACTTTGTATCTTTTAAAGTATTGCTACCTTGAGTTTTCTGTTTTAGCTATTGAAGTACTTCATACAA TGGCATGGTCACTGTTTCATTCATAAACAATATGGCTACAACTATAAGTATGACAAGTCATAATGCATATTTACACAAAT GTCTGTATTTGCTGCAAACTTTTCCGTGCATCAACCAAGTTGCTTTAATATTGTAGAATTGAATCTGATGTCCATGGAGA GTGTCCCTCGTCGGCTAGCCATCAAGATGATTCCGGACATGGTACTTTTTCAAAACCCAATTTTCACTTGTTTTGTTATT TTTCCTACTGTGTTGTTAGAGTTGACCTTGTTATAAGGTCAATGATATTAAAATGGGAAACCGAAGAGAACCTTTTCGTT GAGGAAATAACAATCGACTTCTATACATTTTGTAATCTCATGAAAACTGGTTTGAGGAGAGGTACAGAGCTGACTAGTTA TCACATTAACTCAATGAGACCAACCTTGCGGAACACCAACTCCTAGAGTAGATCGTCTATCACTTGACTTGGCAACAACA CTCGAGTAGATCGTCAGCTTACATTTATGTGAGCCGTAACTCGAAACTCAGCTTTCATACTTGACTTGGCAACAACACTG CTTCTTACTCTTCTACGAGATAAGATTTCCACTCATAATACGCAATAACTTACAATGTCAGTATGACCTTGGTCAGTGTA AACAAGACCCTTTGCAGTTGACCCTTTGATGTACCTAAGGATTCTTTGTAGCATCAGCACTCAGCAGTATATGTTGCATT CTTCTGTCCTAGCCAGATCCGCTACCACATTGGTAGTTTGGTACAAGTTTGCGAATTTAGGGTTTCCTCGATTGTACCAG TTTTAGTACTCTTTTCTGGTCTAGTTCTATTAGAGGGCTCTTTTGTTTTATTGTGGAGATTTCTTTTCAATAAAAATAGT TTTCTTTATATATTCTAATTCAGTTCTATCAGTTTAGCCACCCCAAATCCACCTCCCTTCTTAGGGGTTGTCTAAATCAC CCAACGTAAATGTTGGGTAAAATCACCCTAGTCTTTGGTGGCCCAATAATATTGACATGTATCATGAGCTAGAATTTTTT AAAACACATCTCAAAATATTATTGGGCCTCCTAAGCTAGGGCGATTTTACCCAAGGTAAATCTTGGGTGACTTAGACAAC CCCTTATTTTAAAACATACACTCCTTTAAAGAATCTTGCTAAGCAATTGGATCTTACACGTGTACAATATAAATGATAAA GTAGGTGTGTTCTTTGCTAGATTACAGTTCGATGAAATTCTTGATTCTCCAATTTGCCTATTCTATCTCAATGCTAGATA GATCTGCAAGGTTATTTCAAGGCCTTTGTTTTACTTTTCTTCTTAGGTTGAAAAGCTGTATGGTCTGAGACTGAGCCTAA ACTTTGGAAATAATTACAGTCTGTATGACTTGATTAATGCACTTTGCTTCCGCTGTACTTCTGCTCATACTGTTGCATTG TGATTCTGCATTAATTCATTATTCTGAACATGTCTACAGAACACACAGGGCATCACCATCACGATCATGTACATGATTCT GCTGTCTCCAGTGTCAGTATTGTTGCAGAGGGAACCCTAGATCTTGATGAGGTAATAATAGAGTGTGTTTTGGAAACCAT AAAACTGACTTTATCTCCAATTCCAATGAAAAATAACGGAGAAACATGTTTTTCAAGACAAACGTGAAAGCTCCAAATTG GAGCATTAAGAAAATATCCGTTCATGTTCAATGATAACCAGTATAAAAACACACTCTTAACCCTTTAAGCTTCAACTTTT ATTCACATCATTGGTGGTTTTGTTGATGGCTTTGTCTTGGGTCATGAAGAGCAAGGCTTGAAATCGATGTGTTGTACTTG CAATGCATAAGGTATATGAATTTTTCATGAAATTGCTGCGGAATGTTATTTATAGATCTTTAAATAGAGTATAAAATAGT GTCCTGTTTGACTGGGTTATTATGAAATGACTCGTGATATATTGATCACTGATTTTTCTACTTTCAACCACCCCCCACCC CCTTTGTGTTGTGTTTATGTGTTGACGTTTATGATTAAATGATGTAATAGCATTCAACGTTATTTCTTCCTTTGTCATTA AATGATGGTCTAGGTTGACGATTGGCTTGAGAGGTTGGTTGAAGAAAAAGGAGAGGACCTATACAGAATGAAGGGTGTCT TGTCAGTGGATGGTTCTGATCAACGATATGTGCTTCAGGTTCCCTTCTATTCATGTTTATATGCTATCACGATTCTATTA CCAATCTGCATTTTCTGAATTGTTGATCTCAAATTTACCCCCATGCCTTATCTTACCCATCTTGCCTTATCCTCTCAGGG GGTGCATTCCATATTAGATGGCAGCAAAGGAAAAGAATGGGAACCTGAAGAAAAGAGGATAAACAAACTTGTGTTCATTG GAAGGAATTTGGATGAAACCACCCTTAGAAAAGGTTTCAGAGGTTGTTTAGTCTAG
CDS sequence (LotjaGi4g1v0146300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCACAAATTAAGCAAGCTAAATTTGGATCTGTTGACATAGACTTTGTTCTGGGGGTAGGAGGATATGATCTTCAGAG AATTGAATCTGATGTCCATGGAGAGTGTCCCTCGTCGGCTAGCCATCAAGATGATTCCGGACATGAACACACAGGGCATC ACCATCACGATCATGTACATGATTCTGCTGTCTCCAGTGTCAGTATTGTTGCAGAGGGAACCCTAGATCTTGATGAGGTT GACGATTGGCTTGAGAGGTTGGTTGAAGAAAAAGGAGAGGACCTATACAGAATGAAGGGTGTCTTGTCAGTGGATGGTTC TGATCAACGATATGTGCTTCAGGGGGTGCATTCCATATTAGATGGCAGCAAAGGAAAAGAATGGGAACCTGAAGAAAAGA GGATAAACAAACTTGTGTTCATTGGAAGGAATTTGGATGAAACCACCCTTAGAAAAGGTTTCAGAGGTTGTTTAGTCTAG
Protein sequence (LotjaGi4g1v0146300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQIKQAKFGSVDIDFVLGVGGYDLQRIESDVHGECPSSASHQDDSGHEHTGHHHHDHVHDSAVSSVSIVAEGTLDLDEV DDWLERLVEEKGEDLYRMKGVLSVDGSDQRYVLQGVHSILDGSKGKEWEPEEKRINKLVFIGRNLDETTLRKGFRGCLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 159 | 159 | 2.1E-84 | – | |
| PANTHER | 1 | 159 | 159 | 2.1E-84 | – | |
| MobiDBLite | 33 | 63 | 31 | - | – | |
| MobiDBLite | 42 | 62 | 21 | - | – | |
| Gene3D | 44 | 158 | 115 | 1.0E-40 | ||
| SUPERFAMILY | 64 | 158 | 95 | 1.24E-25 | – | |
| SMART | 64 | 158 | 95 | 1.0E-13 | ||
| Pfam | 64 | 158 | 95 | 5.9E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0146300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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