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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011629
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 8 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.541s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0024529.1
n.a. PREDICTED: COBW domain-containing protein 2-like [Glycine max] gi|356559093|ref|XP_003547836.1| chr0 9773259 9781790 -
5 domain predictions
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Lj2g3v1253990.1
n.a. COBW domain-containing protein [Medicago truncatula] gi|357487507|ref|XP_003614041.1| chr2 20033095 20037978 -
5 domain predictions
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Lj5g3v1667300.1
n.a. COBW domain-containing protein [Medicago truncatula] gi|357487507|ref|XP_003614041.1| chr5 23794384 23799297 -
5 domain predictions
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Lj5g3v2288560.1
n.a. PREDICTED: COBW domain-containing protein 1-like [Cicer arietinum] gi|502121422|ref|XP_004497313.1| chr5 33274950 33278150 +
4 domain predictions
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LotjaGi2g1v0296000.1
n.a. CobW-domain-containing protein; TAIR: AT1G26520.1 Cobalamin biosynthesis CobW-like protein; Swiss-Prot: sp|Q99MB4|CBWD1_RAT COBW domain-containing protein 1; TrEMBL-Plants: tr|I3S5R3|I3S5R3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0296000 LjG1.1_chr2 77079469 77085436 -
3 domain predictions
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LotjaGi4g1v0146300.1
n.a. CobW-domain-containing protein; TAIR: AT1G80480.1 plastid transcriptionally active 17; Swiss-Prot: sp|Q8VEH6|CBWD1_MOUSE COBW domain-containing protein 1; TrEMBL-Plants: tr|A0A0L9TNH2|A0A0L9TNH2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0146300 LjG1.1_chr4 23607258 23615409 -
3 domain predictions
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LotjaGi4g1v0146300.2
n.a. CobW-domain-containing protein; TAIR: AT1G80480.1 plastid transcriptionally active 17; Swiss-Prot: sp|P24203|YJIA_ECOLI Uncharacterized GTP-binding protein YjiA; TrEMBL-Plants: tr|A0A072U3B1|A0A072U3B1_MEDTR Prli-interacting factor L-like protein; Found in the gene: LotjaGi4g1v0146300 LjG1.1_chr4 23609927 23612542 -
3 domain predictions
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LotjaGi5g1v0358000.1
n.a. CobW-domain-containing protein; TAIR: AT1G80480.1 plastid transcriptionally active 17; Swiss-Prot: sp|Q8IUF1|CBWD2_HUMAN COBW domain-containing protein 2; TrEMBL-Plants: tr|A0A0R0I7G4|A0A0R0I7G4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0358000 LjG1.1_chr5 67275526 67280977 +
3 domain predictions
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