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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0146700 |
| Transcript ID | LotjaGi4g1v0146700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Defensin; TAIR: AT4G30074.1 low-molecular-weight cysteine-rich 19; Swiss-Prot: sp|P82733|DF183_ARATH Defensin-like protein 183; TrEMBL-Plants: tr|I3T1P0|I3T1P0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0146700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:23707904..23708580) extracted from Lotus japonicus Gifu genome v1.2.
CTGAAAGTAATAGGTTAAATATTTCAAATGTTGAACCCCATGGCAAAATATTGTTCTCTGTTTATCACCTTGGTTCTTGT TTTAACCGGTAAGTCTCTTGTAACACCTTGATGTTAGTTCAAATAAAAATGATATGAAACCTCAATAGTGTTTACTTCAT ATTATTTATTTATCTTTATCAAAGTTCTTATTATTTATTCACCTTTTGAGTGTTTTTATACTTTGAATTGTAGGGGAAGT AAAGGTGAAAGGAAATACATGTTATGATCATTTGGGTTATTGTGGTCCCCCAAAAGATTGTGACCAAAGGTGTAAAGGCC TACATAGTGGTGGAAAAGGCTTCTGTGACGTTAAGGAAGACGATTGCATATGTAGTTTTGAATGTTTTCTCCCAAAAGAT TTATATGAAGATAATTTAGGTATATGTGGTGGTGGGGGAAGTTGTGACCAGAAGTGTAAAGACAAGCATAAAGATGGAAT TGGTTATTGTTTCGATGACTTATGTTTTTGTAATTACCATTATGAGCCTCCAAGCCTAGTAAAACCTAAAATGTTTCATG GTATATGAAAATCTAATTTCTTCCTCACAAGTTTTGTATCCACCTATGGAATAATTATGTTCTGAATTGAAATAAAATAT TATCTTTCTTTCAAATTGTCTATGAAATTGTAAATTT
CDS sequence (LotjaGi4g1v0146700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAACCCCATGGCAAAATATTGTTCTCTGTTTATCACCTTGGTTCTTGTTTTAACCGGGGAAGTAAAGGTGAAAGG AAATACATGTTATGATCATTTGGGTTATTGTGGTCCCCCAAAAGATTGTGACCAAAGGTGTAAAGGCCTACATAGTGGTG GAAAAGGCTTCTGTGACGTTAAGGAAGACGATTGCATATGTAGTTTTGAATGTTTTCTCCCAAAAGATTTATATGAAGAT AATTTAGGTATATGTGGTGGTGGGGGAAGTTGTGACCAGAAGTGTAAAGACAAGCATAAAGATGGAATTGGTTATTGTTT CGATGACTTATGTTTTTGTAATTACCATTATGAGCCTCCAAGCCTAGTAAAACCTAAAATGTTTCATGGTATATGA
Protein sequence (LotjaGi4g1v0146700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNPMAKYCSLFITLVLVLTGEVKVKGNTCYDHLGYCGPPKDCDQRCKGLHSGGKGFCDVKEDDCICSFECFLPKDLYED NLGICGGGGSCDQKCKDKHKDGIGYCFDDLCFCNYHYEPPSLVKPKMFHGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 25 | 25 | - | – | |
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| PANTHER | 1 | 116 | 116 | 3.5E-21 | ||
| Phobius | 9 | 20 | 12 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 131 | 106 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0146700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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