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LotjaGi4g1v0149700.2

Overview

Field Value
Gene ID LotjaGi4g1v0149700
Transcript ID LotjaGi4g1v0149700.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Actin-related protein 2/3 complex subunit 2; TAIR: AT1G30825.1 Arp2/3 complex, 34 kD subunit p34-Arc; Swiss-Prot: sp|Q8LGI3|ARC2A_ARATH Actin-related protein 2/3 complex subunit 2A; TrEMBL-Plants: tr|I3SIQ2|I3SIQ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0149700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:24595119..24599828) extracted from Lotus japonicus Gifu genome v1.2.

ATGATACTGTTGCAGTCCCATTCTAGATTCCTGCTCCAAACCCTCTTGAATCGCGCTCAAAAGTACGTTCCTTCTCTTCT CCCACTCATCTTCTAATTCAATCAATGTTGTTTCCATTTTCCCTATATATAGTTGTAATGTTAGAACCTGTTGGAGTTTT TGGGGTTTTATTTGGAAGTGGTATATGAGCCTATCCTACATCCGTCTATTGGACTACCCACAAATGAGGCACCTGCTAAT ATCCAGTTCTGCAAACTTTGCCGTAGGATGTCTCAAGTGGTAGGAGGTGGGGGACATATGAGGTGGGTAGGGGGAGGTTC AAGGATCGATTCCTGATGCGATGTACCAAAAAAAGTTCTGCAAACTTCACACTCACTCTGTTGTCCAGTCCTGGGTGTGA GAGTGTGTGTTAAGGTCTTGCATTGATTGTAGGTATGGCCATAATAGTCTTTATAAAGGGTAGAAGAATCCTCACCCCTG AGCGAGCTTTTAGGGTAGAGTTAGGCCTAACCCGAATTCTAAGCGAGCGCGAGAGAGAGAGAAAGAACTCTTATTTGTGC TATGATGAGAAAACAAGGAAGATAACCACCTTACAAGAGTTTACCCTTAGAAAGACTCAGTTAACTACATATTTGCCTGT GTAACTGATTTTTAACTAACCTACTAACTCCCTATTGTGTACTCTTCCTTGTATACAACTTTGTGACCTGATTTTCCTGT TTAGGTTCGTGTGTAAAATGACTAAAAATTCTATTATCAAGGTTAGAAGAGATATAAACAGAGGTCTGTTTAGTATAGAT TTTGGTAGAAATAGATATTGAAAGTATTTGTGTTAAAACTTGATTTGTGTTGGAATTATATTTTAAAAAGTGAGTTTAAA ATAATTGATTTTGTCTGGACAGAAAAGTAGAGTCACTTCGGAATAGTTATGCTTTAAAAAAATTTATGGGTCCTCCACTT GGAATAAATTCTACTAAAATATCTAAAAGTTTTCACTTTCTCATGAGTAATTTTGCTCAATGCCAAATTTATTGTTTCAC ATCATAAGTTTACCAAAGGCACATCATTGCTGTGTGCTGGGGATTTCCTTGCCACACATGTGATTCCTCTGCAAGCACAC GAGCTTAGGGTCAAGGAGACCCAGATGACTCCATTCCAGAAAATTTCCTGTCATTAAGTATATCTATAGCCTAACTTCCA TTTGAACAAACTTAATGTATACTATTGTTATATTTATGCCAAGGGTGTAGTTATTGACTTTGATTTCATCTCATAAAACA ACTAGTTGTAATTTATACTTACTGCTAAAGAAAATACTTCAAGCTCCATATTTTCTGGTTAAGTCAATTGTTCCCCTTCA TTTTGTTGATCTAGCAAGTTATCGTGAAACCTGAACTTATGCTGCTTCAGTGATATGTCATACAATGTTAATGTTTTTTT TAATATCTATTTCAGTATTGAAAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTTCGATATCATATTC AGGTAACGATGATTTTGATGTAGACAATTACCATGGAAAATATTTGGATGACTACCTTCAATCCCTTAGTTAGATATAAG TTGTTTTTTGACAGTTTAGGTTGCGCATTTGACCCAGCAAAAATGATTGTAGGTCTCAATGAAGAATCCGCATATTCTAT TGCTATCAGTATCATTGCCTACTCCTTCTTCAGAAACAATTTTTGTCTGTGGGCTTCCTTTTGGAGCCATTGAAGCAATA AAAGCTACATATGGTGGTATTGTGCAAATTCTAGATCCTCCAAAGGATGGCTTTAACCTTACATTGAAAATAAATCTGTC AAAGATTCCTGCAAATCAAGGTACAGCAATGTTCTGTATTGGGAACTCGCCATTCCCCTTTAAATGAGAAGTTTTCCTCT TAAGCTGAATTTGTTGTCTGCTGTATTTTCTATGCATTAAGTAATCAATTAGTAATTCATTTTCATTACTTTAGTAAATT CTCTGCACCTTTTTTGGTTTCAGGAATTTATATTTAGTTATTATAGATATTAGATAGGATTTTCAAGATATACTGATAAT TGGAGCACTTGGTTGAGTGCTTCAATTTTCAAATTGGAACTAGGTATGACTCTGAAGTTATTTGGTAATTTAATTACTAT GGCATATTGGTCTGCATCATCTACATGTGCTTTGGATTGTCTATGTTCTGAACATTTACGGTCTTGCTTCATCTTAATGT TGTTTGTTGATGCGGAACTCAAAGGAAGCCAATTACGGTTTTTGAAAGCAGCAGTAGATATTAATTAGTAGATTCATGTA TCTGTAGGTTCATGTACTCATGCTTATGTTTTTAATCTTCCTTGATGTTCTTGGTTTTTTTTTTGACGGGAGATGTTCTT GCTTAAAATAAAACAATTAGGAGTTTTTCTTGCTTAATCTGCCTTGATGTTGTTGAACTTGTGCAGAGCAAAGACATGCT TTTTTGGTAAAAGTTGCATCAGTAAGGGAGGTTGTCCTTGGGGCACCACTGAGAGTAATTTTAAAGCATCTTGCTTCTAG GACAGTTGCCCCAGACATGGATCCAGTTGTTGCCCTTGTTCATCGTCCGAAGGAATCTTTTTTCCTTTTACCACAGGTAT GATAGTAGATGCAACTTTCTGTTACTTAGCCCTAATCACTGCTTGCATATTTTATTCGTATTTTGTTTTCTTTCTACACT AAGCCACAGTTGTTTCATAATCCACAACTATACCCAATACCATATGTAGGGTGACCTTCCTTTTAACTTATACCTTGTTC CCCACCTGGATTTATGTATACAATTTAATGCTGCTTCTTTAGAAAAAGAAGGTATGTGGCAAAAGACGTTTTATATTTAA AAGGATAGAAGAGAGTGGAGAAAAACTAAAAAAGTAAGTGGTACTGGCGAGAGAGCGTGAGCTTACAATTCGTTTGTCTA TACTTAATTGAACATGGAAAACATCTTTTTTGTCAGAAGATGTTCCTGGGCCTTTGCTTCCAATTTTCAACTGCTCAAGC TGTGGGTGAACTGGTTCGTTGACATACAATTAGAAAGTCAGTCGTAATTTATCCTTGAAAACTCTGGCATTATTTTCCAA TTTCCATTCATTAGAACCAAGTTAGTGAAAAATCATAATTATTTTATGTCCTGCACTCGATATGCTTCTCAAGATCCGTG TAAGTTGTAAGTGACATAGCAAAATTTTCTCAAAGTTTGCTGGACATGACCAACTTTCATTTTTGTTAATGTAGTTAAAT CTAAACTCATGATACATATCATCTGAGCATGACAGGATATATGTGTGTGTATAAAATAAGAAATTCAGTAAGACAAACTG TCACAGACAAGAGATTACATGAATTTGGAGCATAATGGGTCCTCTTTAACATAAAAGGAAATCACAGATAATGAATAAAA AAATAATGGAGCAAAGCTGTCTAATCCCTCAACATATCTTATAGAGAAGCACCCTTAAAAGAACATGCATTACATCAAAT AGAAAGAAATTCCTAATCTTCATCCCATATCCATTGCTGTGCCAAAGAAACCTCCTTAATCAACTAAGGCAATAGTGTTA TCTATGTGGTCTGCAAACCTGTGAAAACTGTTTCTGTTAGTTTTTGTTGGGAAATAAAGGAAAGGAAAAAAGTATGAAAT CGATAATTCTTTTAATTTGAAACCTGACCATTCCTTTTTGCTTGTTCTGATTCTATTATGCTTAAAGTGAATGTTTTGTC ACTGCATCCTTATAAGATTATCATTTGGGATGTTAATTGATCCTTTATAGTTGTTTTAGAGGGAATTGTTTCTAATGATT AAATGATTAAAACATTTTTTTTGACAGGCTGATAAGGTGACTGTGGTGTATCCTATGAGATTCAACGATTCAATAGACAT GGTCCTTGCTACTTCATTCTTGCAGGTATGTTTTCTTAGGTGATTTGTAACTCATTAGGGTTAGTGGGATGAAAGAGAGT TGGGAGAGATACAAGATCTTATTGTTGCATCTTGCAAGCCATTATGGTGCTTTGCTCCTTTTTTGGTTTGATAGTTTCAA CTTTCAAGCTTTATTATAATTTAGGAATTTGTCGAAGCCAGGCGTACAGCTGGACTTAGTAATACCCCTCCTTGTTCGTG GTCTCATACCCCTCCATTGGAACTGAAAGAACTGCCTGCTGATGCATTATCTGCAAATGCAGGATTTGTATCATTTGGTT AGTGTCTGGAGAATTGTTAGTGTTCATTTTATTTCCTTTGGCTAGTATCATTGCAATGTAACATTTTCCACTCTGCAGTT ATCTTCCCTCGTCATGTTGAAGGCCCGAAATTGGATCGTACAGTATGGAGTCTTTCAACTTTTCATGCCTATGTTAGCTA TCATGTTAAGGTGGGTGTTTCTGTAAATCAAAGTTCTTCAGCTGCACACCTGCACCCCTAATATGATATCACTTTCATGT GTTCAGTATTTACTCATGACGATGCTCGTGTAGAGCTTGTTCTAGTGTCTTTAAGAAGATATTTCCATATTTTAATATGA ATCATAAATTTGCGCAATTTTCTTGTGATTTTACTTTTGCATTATTTAGCTAGGGTTTAAACTATTATCATTGGCTAAGT ACCATTGTGAAGATTCTATTTGTGTTGTAAGTAGTAGATCTTAAAAGATTGGAGCTTAGGGTGAAGTTTT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0149700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATACTGTTGCAGTCCCATTCTAGATTCCTGCTCCAAACCCTCTTGAATCGCGCTCAAAATATTGAAAAAGGAGTTGA ACTGGATCACCACTGGGTTGAGTTTGATGATGTTCGATATCATATTCAGGTCTCAATGAAGAATCCGCATATTCTATTGC TATCAGTATCATTGCCTACTCCTTCTTCAGAAACAATTTTTGTCTGTGGGCTTCCTTTTGGAGCCATTGAAGCAATAAAA GCTACATATGGTGGTATTGTGCAAATTCTAGATCCTCCAAAGGATGGCTTTAACCTTACATTGAAAATAAATCTGTCAAA GATTCCTGCAAATCAAGAGCAAAGACATGCTTTTTTGGTAAAAGTTGCATCAGTAAGGGAGGTTGTCCTTGGGGCACCAC TGAGAGTAATTTTAAAGCATCTTGCTTCTAGGACAGTTGCCCCAGACATGGATCCAGTTGTTGCCCTTGTTCATCGTCCG AAGGAATCTTTTTTCCTTTTACCACAGGCTGATAAGGTGACTGTGGTGTATCCTATGAGATTCAACGATTCAATAGACAT GGTCCTTGCTACTTCATTCTTGCAGGAATTTGTCGAAGCCAGGCGTACAGCTGGACTTAGTAATACCCCTCCTTGTTCGT GGTCTCATACCCCTCCATTGGAACTGAAAGAACTGCCTGCTGATGCATTATCTGCAAATGCAGGATTTGTATCATTTGTT ATCTTCCCTCGTCATGTTGAAGGCCCGAAATTGGATCGTACAGTATGGAGTCTTTCAACTTTTCATGCCTATGTTAGCTA TCATGTTAAGGTGGGTGTTTCTGTAAATCAAAGTTCTTCAGCTGCACACCTCTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0149700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MILLQSHSRFLLQTLLNRAQNIEKGVELDHHWVEFDDVRYHIQVSMKNPHILLLSVSLPTPSSETIFVCGLPFGAIEAIK ATYGGIVQILDPPKDGFNLTLKINLSKIPANQEQRHAFLVKVASVREVVLGAPLRVILKHLASRTVAPDMDPVVALVHRP KESFFLLPQADKVTVVYPMRFNDSIDMVLATSFLQEFVEARRTAGLSNTPPCSWSHTPPLELKELPADALSANAGFVSFV IFPRHVEGPKLDRTVWSLSTFHAYVSYHVKVGVSVNQSSSAAHL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12058
1 271 271 2.8E-110
IPR007188
SUPERFAMILY
SSF69645
1 129 129 1.28E-26
IPR034666
Gene3D
G3DSA:3.30.1460.20
1 139 139 4.5E-31
IPR034666
Pfam
PF04045
73 271 199 7.9E-43
IPR007188
SUPERFAMILY
SSF69645
135 272 138 5.49E-43
IPR034666
Gene3D
G3DSA:3.30.1460.20
140 279 140 1.2E-43
IPR034666

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005885
Cellular component Arp2/3 protein complex A stable protein complex that contains two actin-related proteins, Arp2 and Arp3, and five novel proteins (ARPC1-5), and functions in the nucleation of branched actin filaments.
Subterm of
Part of
GO:0015629
Cellular component Actin cytoskeleton The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
Subterm of
GO:0030041
Biological process Actin filament polymerization Assembly of actin filaments by the addition of actin monomers to a filament.
Subterm of
GO:0030833
Biological process Regulation of actin filament polymerization Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament.
Subterm of
Regulates
GO:0034314
Biological process Arp2/3 complex-mediated actin nucleation The actin nucleation process in which actin monomers combine to form a new branch on the side of an existing actin filament; mediated by the Arp2/3 protein complex and its interaction with other proteins.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0149700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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