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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0155500 |
| Transcript ID | LotjaGi4g1v0155500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Trichome birefringence; TAIR: AT1G60790.1 trichome birefringence-like protein (DUF828); Swiss-Prot: sp|Q8VYR3|TBL2_ARATH Protein trichome birefringence-like 2; TrEMBL-Plants: tr|A0A072TTL3|A0A072TTL3_MEDTR Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein; Found in the gene: LotjaGi4g1v0155500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:26986462..26992821) extracted from Lotus japonicus Gifu genome v1.2.
AGAGTGTTCCACCGTAACAAGGTGCAGCGGTTTGTTTCTTTTGGTCACTTCTTCTCTACTTTCCTCACCATCACCATGTG CCATCTCTGAACTTTGAAGGTCATTTTTCTTTGTTTGTTTCACTTTCTTCAAGGACCCGAAGAAAAAGAGAGAAGCATGC AATGCAAGTTTTTGGCTATGGAGTACTTGAAGAAACTCACATTCTCTGACCCTTTTTTGTCACACAGAAGAAAAGTGTTT TCTGGGTTTGGTTTGAGTTTGGGTATTGGAGCTTCTCTGCTTCTGTGCTCTCTGTTCTTTTTCATTAATCCCTTCTGGGT CCCCAAAGTTCAAGTGTTTCTGCCAGAATTTAACACTACTAGTGAAGATTCTTTGTTTGCTTCACCCCCCTCTTCATTCA ACACTAGCCAGTTTAATTATTCCTCTGAAAACAACACTTCTGTTACTTCATTTTCCCAACATTATGAGGGCACTGTAGAA AATGTTGTTGAGGGTAGAACTGGTCAAGTGAATGTGTCAGGTATTAGATTGGGACCAGATGTTGACATGAATAATGTTAG TTTTGGTCTTAAAGTGGGGGGAAATGTGGGCAATGCTTCATGCAATGGTGTAGAGGGAAGGAAAGAGGGGAGTTTGGTTG GGGAAAAGAATGTAACTGTTATTGATAATGGTTCCCAAGTAGTGGAGAAAATGAAAGTTAGTTTTTATGAGGAGTGTGAT ATCTTTGATGGGAAGTGGGTGAGGCATGATTCAAAGCCATACTATCGTTTAGGGTCTTGTCCCTTCATCGATAGGGACTT TGATTGTCACCGGAATGGGAGGCCTGATCTAGATTATGTGAAATGGAAGTGGCAGCCAAATCAGTGTGACATTCCAAGGT ATGTTTATTGACTTATTGGTTACCCTTTTTCACATGCAAATGTAGTGAGGTGTTGTTCTTCATCTAGAATGGGAAAATAG TTAGTACATGAAGTATGAGAGTGGGGAATAAGAATGATTCAATGTTGATTGTAACAATTAAATGAAAAGAATGAAAGTTT TCTTGCATGTGTTAAATAACATGTTTGGATCAGATTCTCTGTCCTCATAATCAATTCTGGGCTTCTGAAACACAGAAATG CTCATTTAGAAACTCGTTTGAAAATGAAGTCAAAATCATGGTGTTCAGAAGCAAAAGCTAAAGGTAAGGGAAGTTGCTTC TGTCAACCATAATTTTGGCTTCACCATGGTTTTCGAACGAGATTCTGAACATGCATGCAGCATCTTCCCAAATTTATTTT GTGTTGTCTTTAGAATGAATTGTAGGTAGATTTTCTAACATGCAGTAAGTGTTTTTGGATCCACTGGTTTGCATCTTTAC CTGTATGTATTGGCAGTATTGCAATACTTGAAGAAATATCACAATCCAAAATGTTTGCATTGGTCTCATAAGTGTAGTGT TTATGATTCAGTTTTGGCATGAGGACACTTCAATTCTAAGAAAACCAGTGGCGTTTAATTTCAGCTTTGAAATTTACAAT TTCTGTTCTTGTATTTGATCAATTATTGATGTAACTTCTCCTCTCAGTTTGAATGCAACTGATTTTCTGGAGCGGTTGCG CGGCCAGAGGCTGGTTTTTGTGGGGGATTCATTGAACAGGAACATGTGGGAGTCTCTGGTCTGTACCCTCCGTCACAGTA TCAGGAAGAAAAAGAAACATGTTTATGAAATTTCAGGAAGAACCGAATTTAAGAAGAAAGGTGTCTATTCTTTTAGATTT GAGGCAAGTTTCCTGTAAATCTATTGTACTTTGTCTGGTGTGAATCTTGTAATGGTATCTTATTAGAACTTATTTCCTGT AATTTTAGGATTATAATTGTTCGGTGGATTTTGTTGCGTCACCGTTCATTGTTCGAGAGTCCACTTTCAAAGGAAAAAAT GGGTCATTTGAGACATTAAGATTGGATTTGATGGACCTCTCAATTACCAAGTATCAGGATGCTAATATCATAGTCTTCAA TACAGGCCATTGGTGGACTCATGAGAAAACATCAAAAGGGTGAGTTTAGATTCATTCAAAATATTTGTCTCTATTGTCTT CTTCTTTCCCATATTTATATTCTGCCATATCTTGATTTCTGCTTGTGCTTCACATAGTAAGACATGAGATTAAGATTTCT GATTTTGCTGTCATCTTGTACTGTTGCAGAGAAGATTATTATCAAGAGGGAAACCATGTATACCCTAGACTCAAGGTTTT GGATGCATATACAAGGGCTTTGACCACTTGGGCTAAATGGGTTGACCAGAACATTGATGCCAATCAAACTCAGGTTTTCT TCAGAGGATATTCAGTTACACATTTCTGGTATTAATCTCTTTTACATAGCTTCTTCCATAATTTAATTGCTTCCGCACTT ATATCTTTTCCTCGCTTGTACTGTAAAATTAGTTAAAGTATCTATCTTACTGGAAGTTTATGTGTTAATTAAATCTAGAC ATGCGAATTCGCCAAGGTCCTTTATCATCTAATATTGACTATTGCTTGTTTACTTGTACTTCTACTATTGGGAAGTCACC ACATAGACTAGAAATATGACCGAGATAGCCCATATATATGGGAAGACAATTGTCATCTCTAAGCTAGCTAGCTTTTGGGT AGAGTTAGACCTCCCAAATTCTAATATCTACAAATATATTAGGCTTAAATGCATTTTTGATCCCTGATGTATTGTCATTG TGCGATTTGGGTCCCTTATGTTCAAAACGAGCGAATTTAATCCCTCATCTTCCAATTTGTGAAAATTGGGCCCCTACGTT AAGTTACCTTCCAAAATTAAACGGAAGTTGTTGATGTGGCCTCTTTAACTGACGTGGCCCTGACGTTGCACGCCACTAGG ATGACATGTCACATAATTTTCTTTTCCCTTAAAAATATTTCTATTTTCTTTTAATTTATTATTTTTTTTTAACTTTTTAT CTTCTTCAACCCTTTACACAGCACCACCTCGCCTCCCTTCTTCTTCTTCCCTCTTCATCCAATACCATGAATTTGAAATC AAATCTTACACAGTAAATTAAAGCCCACATATATTGAATCAAACCCAAATTATCTAGAAAACGGGATGAATCAACCATTT TCTCCCTGCTTCAAAGTAAAACAACCCATAAAGGGTTTCAAATTAACATCAATTCCAGAAACAAACAAAAATTGAATCTT CAAGTTATTTTCTTTAACAGATCAACAACTTCATCAAGAACAAGTGAACAACATCAATAAAAATCTCTGCAGGGAACCCA GAAAGAGGGGAAAAGGTAAAATTCCAGAAACATAGAAATTCCTTGCAGACATAGCCGGAAACTCTCCCTGAACCTTGTCG TCGTCCTCTGTTGCCCAGCCCCTGAGCTCCACCGCGGTCACAATCACTACAAACGCTGCAACAATCGTCGTCCTCCCCGA TCTCCCCATCGAAGGTCTATGTCAAGTCTGACTGTTGTGAAGCTTCCTTCGTTGATGCCGCTGCGCCAGGGAAACCGCCG CTCCATCTCCACTGCGCCGCCGCTCCTTGCCGCCTCAATCGCTGTCGCGGAAACCGCCGCGAGCACCAGGAGGAGCCGCC TTGCCAATCCTCTTCGTCATCATCTCCAATCTTCCCTTCCCTTCCATGATATTCGGTTCTCTCTCTCTTGAGTTCTATTT TTCTTTTCCTCATCAGAAATAGTTAATGTGGATTTTGTGGATGTGGGTTTTGTTATGGAGAGGAGCAGGTTCAGATATGA GGGAGAAGAAGACAGTGGGTTGACAAGAAAGTGGTGGTGGTTTGGCGTTGACTGTGTATGGTAGAGCTTGGTGGTTGTGG CTATGGCTATGGTGAAGGGATGCAGAATGCAGAACGTTGGGGAAGAAGTTTTTTTTTTTTTAAACCAAGGAAGAAGATGA ATTGATTTGGACTTTTTTTAAGTTATATTTTGTTCTATTCTGATTTTAATTTGGTTTTTTAATTAAGTTGTTTTATTTGT TTTCATTTTTATTTACTAATGTGTTATTTTTTTTTTTGAAAGAATTTACTGATGTGTTATTAAAGTGGTGTAATTAGCAA AGATAGGTTAAGATGGTGTAAATAGTAATGAGTCAGCAATTTCCGTTTAATTTTGGATGTCAACTTGACGGAGGGGCCCA ATTTTCACAAAATGGAAGATGAGGGATTAAAATCGCTCGTTTAGAACATAAGGGACCCAAATCGCACAATGACAATACAT CAGGGATCAAAACTGCAATTAAGCCAATATATTATGTAACAAGGACATGGAATAGGTCACTGTTGGAAAATGGAGATTAT GGAGACATTTGGTAAGTGGTAGTATACCCTTTGCAAGTTTACAGAAGATCTGTATGATCTGGCTATAAAGAGAAAGTTAT TGGTAGTTGAAAATAAATTAATTCAATACTAGATTTTTATCATGATCATCTCAAGATACTTTTTTTTTTCCTCCTTTATC AAAATCCGTAGCTACTTTATTTTTATTATTGCTGATGTTTTATTACTTCAGCAATTTCCCCCTCATCCCCAGTCCCACCT CTATCTATAGGCTAGAGAAACCATGTTGTGTAGTTGATCATGTCTTAGAATCTGGATCAATATCCTCTCATGTGACATGA GAATTTCACATAATATTGTCATGTTCAAATTCCGTGTCTATCTCTCTCTTCGTTTCATATGTATTAAATAGATCTTTCTA GTTATTTATGGAGAAAAATAGACACAATGTTTCACTCATGAGATGATCCTAATCCCAATGCCGCAACACGATGAGGACCT GCCTTCAGGATTGATATTGTAGTGGGTTTCTACTGCAAATTCTCGAATACAATTGGCTCTCGATTTTCTTTTTACCACAT TTTGTTACCATTTAAACCAACCATTAAAGCATTTGAATTAACCAATTGGAATGAAATTAACCTTTAATAATTTGACTAAT TCACCACCTTAATTGGTTAATGTAAACCCTTCTCCTTCCGAAACTTGTCCAAGGCGGTGACTTCATATGTACATTTTAGC ACTTATAGTGATTCATATCCGTCTGGTTTTCCTTGATGAATCTAATACTTTGCAGGGGTGGGCAATGGAATTCTGGAGGA CAGTGCCATAAAGAAACTGAGCCAATATTTAACAAAACTTACTTACAAAAGTACCCTTCGAAAATGCGGGCTCTAGAGAA TGTCATAAAAAACATGAAAACCTCAGTGATATATCTGAACATAAGTAGACTTACAGATTTCAGAAAAGACGCACATCCTT CGGTATACAGAAAGGAGTACAAGATCTCAATGGAGCAGAACACTACTGCACCATTTGAGGATTGCAGCCATTGGTGCTTG CCTGGTGTACCGGATACTTGGAATCAACTGCTATATGTTTCTCTCTTAAAAAGAGGGAAGGGAACATGGAAAAGCTGAGC AAGATTCCTCATTCCACAACCAATTTCTAGTTTTTTATGCTTATTTAGAGTCTGTTTGGATGCGGGACAAAAAGCACTTA TTGGAGCTTATGCTTTTTTCTAGTGATAACCTCTAATAAGTTCTATTTAGTCGGGATTCAATCTGGATCATAGTTTTACA ATATGTATATTCTGTGTTCCCCTTTGGAATATCCATCATAAAGGGTAACTTAAGATATTGTTTGATTAGAATGTCAAAAT ATTTAGGGAAGGGAATAGGTTAGTGGGTTGGTTTTTGCCAATTCTCCTCAATGACCCACGGATTGTAATATATATATATG CAGGTTTGGTGTGAGAGATGATCTTGTTGTAGTTGCTTACGGTGTTTTGTTTGTAATAGGGGGTACAGTCCCTCCATTTT ATCAAGAGAAAGAGAAAATGACAAGATTGTATAGAGGTTCCTATATTCATCATCTTGCATGGTACAAAGATTTGATTTGA ATCTATCTGATAGACTGATTCATACATCAGTTACTGAAAATGAATTAACATACTTGTTATAATGCTTGTGACTTGGGAAA TTATGACAGAATAGAAATTCTTTTTATAACAAAAGGCTCTCTGATTGGCTAAATGGTAAGTTCTCTTCCAGGTTCCAAAA TCCCATCTCAGCTACTGTGATATCAATATCATTCTGAACAAGCCACACCATTAAGGTGTTTTTAACTGGGCCATCTTAAA TAAACTCTGCTAAACCTGAATTATAAGATTATATCACAGTCTATCATTTAGATTTATTTATTGGAGACCACCTATATATG AATTACCCGGAGGTGTCCAATCCTGTAAATTTCACGTGATGTCTAACCATGGGCGTCGCGAGTATGTGTTATTGTGTTAA GGTCTCACATTGACTAGATATATGGCTAAGTAAGCCCGTC
CDS sequence (LotjaGi4g1v0155500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATGCAAGTTTTTGGCTATGGAGTACTTGAAGAAACTCACATTCTCTGACCCTTTTTTGTCACACAGAAGAAAAGT GTTTTCTGGGTTTGGTTTGAGTTTGGGTATTGGAGCTTCTCTGCTTCTGTGCTCTCTGTTCTTTTTCATTAATCCCTTCT GGGTCCCCAAAGTTCAAGTGTTTCTGCCAGAATTTAACACTACTAGTGAAGATTCTTTGTTTGCTTCACCCCCCTCTTCA TTCAACACTAGCCAGTTTAATTATTCCTCTGAAAACAACACTTCTGTTACTTCATTTTCCCAACATTATGAGGGCACTGT AGAAAATGTTGTTGAGGGTAGAACTGGTCAAGTGAATGTGTCAGGTATTAGATTGGGACCAGATGTTGACATGAATAATG TTAGTTTTGGTCTTAAAGTGGGGGGAAATGTGGGCAATGCTTCATGCAATGGTGTAGAGGGAAGGAAAGAGGGGAGTTTG GTTGGGGAAAAGAATGTAACTGTTATTGATAATGGTTCCCAAGTAGTGGAGAAAATGAAAGTTAGTTTTTATGAGGAGTG TGATATCTTTGATGGGAAGTGGGTGAGGCATGATTCAAAGCCATACTATCGTTTAGGGTCTTGTCCCTTCATCGATAGGG ACTTTGATTGTCACCGGAATGGGAGGCCTGATCTAGATTATGTGAAATGGAAGTGGCAGCCAAATCAGTGTGACATTCCA AGTTTGAATGCAACTGATTTTCTGGAGCGGTTGCGCGGCCAGAGGCTGGTTTTTGTGGGGGATTCATTGAACAGGAACAT GTGGGAGTCTCTGGTCTGTACCCTCCGTCACAGTATCAGGAAGAAAAAGAAACATGTTTATGAAATTTCAGGAAGAACCG AATTTAAGAAGAAAGGTGTCTATTCTTTTAGATTTGAGGATTATAATTGTTCGGTGGATTTTGTTGCGTCACCGTTCATT GTTCGAGAGTCCACTTTCAAAGGAAAAAATGGGTCATTTGAGACATTAAGATTGGATTTGATGGACCTCTCAATTACCAA GTATCAGGATGCTAATATCATAGTCTTCAATACAGGCCATTGGTGGACTCATGAGAAAACATCAAAAGGAGAAGATTATT ATCAAGAGGGAAACCATGTATACCCTAGACTCAAGGTTTTGGATGCATATACAAGGGCTTTGACCACTTGGGCTAAATGG GTTGACCAGAACATTGATGCCAATCAAACTCAGGTTTTCTTCAGAGGATATTCAGTTACACATTTCTGGGGTGGGCAATG GAATTCTGGAGGACAGTGCCATAAAGAAACTGAGCCAATATTTAACAAAACTTACTTACAAAAGTACCCTTCGAAAATGC GGGCTCTAGAGAATGTCATAAAAAACATGAAAACCTCAGTGATATATCTGAACATAAGTAGACTTACAGATTTCAGAAAA GACGCACATCCTTCGGTATACAGAAAGGAGTACAAGATCTCAATGGAGCAGAACACTACTGCACCATTTGAGGATTGCAG CCATTGGTGCTTGCCTGGTGTACCGGATACTTGGAATCAACTGCTATATGTTTCTCTCTTAAAAAGAGGGAAGGGAACAT GGAAAAGCTGA
Protein sequence (LotjaGi4g1v0155500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQCKFLAMEYLKKLTFSDPFLSHRRKVFSGFGLSLGIGASLLLCSLFFFINPFWVPKVQVFLPEFNTTSEDSLFASPPSS FNTSQFNYSSENNTSVTSFSQHYEGTVENVVEGRTGQVNVSGIRLGPDVDMNNVSFGLKVGGNVGNASCNGVEGRKEGSL VGEKNVTVIDNGSQVVEKMKVSFYEECDIFDGKWVRHDSKPYYRLGSCPFIDRDFDCHRNGRPDLDYVKWKWQPNQCDIP SLNATDFLERLRGQRLVFVGDSLNRNMWESLVCTLRHSIRKKKKHVYEISGRTEFKKKGVYSFRFEDYNCSVDFVASPFI VRESTFKGKNGSFETLRLDLMDLSITKYQDANIIVFNTGHWWTHEKTSKGEDYYQEGNHVYPRLKVLDAYTRALTTWAKW VDQNIDANQTQVFFRGYSVTHFWGGQWNSGGQCHKETEPIFNKTYLQKYPSKMRALENVIKNMKTSVIYLNISRLTDFRK DAHPSVYRKEYKISMEQNTTAPFEDCSHWCLPGVPDTWNQLLYVSLLKRGKGTWKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | - | – | |
| PANTHER | 15 | 530 | 516 | 2.4E-251 | – | |
| PANTHER | 15 | 530 | 516 | 2.4E-251 | ||
| Phobius | 27 | 50 | 24 | - | – | |
| TMHMM | 33 | 55 | 23 | - | – | |
| Phobius | 51 | 536 | 486 | - | – | |
| Pfam | 185 | 238 | 54 | 5.1E-22 | ||
| Pfam | 239 | 523 | 285 | 3.9E-95 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0155500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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