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LotjaGi4g1v0160900.1

Overview

Field Value
Gene ID LotjaGi4g1v0160900
Transcript ID LotjaGi4g1v0160900.1
Lotus japonicus genome version Gifu v1.2
Description ZF-HD homeobox protein family; TAIR: AT4G24660.1 homeobox protein 22; Swiss-Prot: sp|A2Z259|ZHD1_ORYSI Zinc-finger homeodomain protein 1; TrEMBL-Plants: tr|A0A0S3R2K2|A0A0S3R2K2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0160900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:28684543..28685850) extracted from Lotus japonicus Gifu genome v1.2.

AGAAAAACAAGTAACAAAGTTGGTAACAAAGATTAGAGAGAGAGAGTGTGTTTGGTCCCTTGTTTGTTTTCTTTGCTTGT TTTGGTCGAGATCAGAAATGGACTACGATGAGCAAGAGGAAGAGCTGGTCATGGCTGGAGGAGGAGGAGCGAGTTACGAC GACGACGACTCCTCGCTGGCGAACCCGACCCGAGTCAAAATGCCGAGCCCCGTCGACGACCCAGCGGCGATGATGGTGGT GGTCAGAAACACCGGCAAGGGAAAGTACCGAGAGTGCCTCAAGAACCACGCCGTCGGCATGGGAGGCTACGCGCTCGACG GCTGCCTGGAGTTCATGGCCGCCGGACCCGAAGGCACCATCGACGCCCTGAAATGCGCCGCCTGCGACTGCCACCGCAAC TTCCACCGCAAGGACGCTGCCGCCTTCCCCGGTGACCACCCGTACCATCCTTTCCACCACCGCCGCCACCAACCCCCACC AGGGCAGCCCCAGTACGCGGCTTGCTACCGGGCTACCCCGGCTGGGTACCTCCACGTGGCGGGGCCCAACAGAGGCTCGG GTGCCGCCACGCTGGCGTTGCCAATTGGAGGTGGGCCCCAGGGCGCTCGGGAGCTGATGGATCATGATGATGTTTCGGAC CGAAGCGGAGGCGGAGGAGAAGGGTCGAACTCGAGGGCAGGGAAGAGGTTCAGGACCAAGTTCACTCATGAACAGAAGGA GAAGATGCTGGAGTTTGCTGAGAGTGCTGGCTGGAGGATTCAGAGGCATGATGACAATGTGGTGGAAGAGTTTTGTAACG AGATTGGTGTCAAGCGCCATGTTCTTAAGGTTTGGATGCATAACAACAAGCACACCCTTGGTAAGAAGCCCTAGAAATAA TAAATAAAAATAAAATAATAATAATAAATATAAGAAATAAATAAATAAATAGCAGTGGTAAAAATAGTTCTTTATCCATC ACATGCTTCTGTGCATCTAGTCTATGCAATTTCACAGGATCTACTGAAGCTGAAAGTGACGTGAAATGCTTAAGCTGATC AATCGGGTTCTATCTTGAAGTTGGGAGCTGCCAAATTGCGTCTACTACTAGCTGAAGGAGATCGTTTTAGGTTTTTCTTT TTTTTATTGTTGTCATCCCATGTTCTTATAATGTGGGTGGTTTTCAAGTGTAAGTAGTGTTTGAGGTTGTCTATTCGAAT AATTAAATACATTGAATTGTGTTGGTCAAGTTTAATTTCATTTCAGATTTTGAATTAGTACTGATTTTATATATCTTCTT CTGCCTAGTGTTGTGATGAAGAATGCAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0160900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTACGATGAGCAAGAGGAAGAGCTGGTCATGGCTGGAGGAGGAGGAGCGAGTTACGACGACGACGACTCCTCGCT GGCGAACCCGACCCGAGTCAAAATGCCGAGCCCCGTCGACGACCCAGCGGCGATGATGGTGGTGGTCAGAAACACCGGCA AGGGAAAGTACCGAGAGTGCCTCAAGAACCACGCCGTCGGCATGGGAGGCTACGCGCTCGACGGCTGCCTGGAGTTCATG GCCGCCGGACCCGAAGGCACCATCGACGCCCTGAAATGCGCCGCCTGCGACTGCCACCGCAACTTCCACCGCAAGGACGC TGCCGCCTTCCCCGGTGACCACCCGTACCATCCTTTCCACCACCGCCGCCACCAACCCCCACCAGGGCAGCCCCAGTACG CGGCTTGCTACCGGGCTACCCCGGCTGGGTACCTCCACGTGGCGGGGCCCAACAGAGGCTCGGGTGCCGCCACGCTGGCG TTGCCAATTGGAGGTGGGCCCCAGGGCGCTCGGGAGCTGATGGATCATGATGATGTTTCGGACCGAAGCGGAGGCGGAGG AGAAGGGTCGAACTCGAGGGCAGGGAAGAGGTTCAGGACCAAGTTCACTCATGAACAGAAGGAGAAGATGCTGGAGTTTG CTGAGAGTGCTGGCTGGAGGATTCAGAGGCATGATGACAATGTGGTGGAAGAGTTTTGTAACGAGATTGGTGTCAAGCGC CATGTTCTTAAGGTTTGGATGCATAACAACAAGCACACCCTTGGTAAGAAGCCCTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0160900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDYDEQEEELVMAGGGGASYDDDDSSLANPTRVKMPSPVDDPAAMMVVVRNTGKGKYRECLKNHAVGMGGYALDGCLEFM AAGPEGTIDALKCAACDCHRNFHRKDAAAFPGDHPYHPFHHRRHQPPPGQPQYAACYRATPAGYLHVAGPNRGSGAATLA LPIGGGPQGARELMDHDDVSDRSGGGGEGSNSRAGKRFRTKFTHEQKEKMLEFAESAGWRIQRHDDNVVEEFCNEIGVKR HVLKVWMHNNKHTLGKKP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31948:SF62
1 254 254 5.4E-83 –
MobiDBLite
mobidb-lite
1 39 39 - –
PANTHER
PTHR31948
1 254 254 5.4E-83 –
Pfam
PF04770
56 106 51 2.2E-27
IPR006456
TIGRFAM
TIGR01566
56 106 51 7.7E-27
IPR006456
ProSiteProfiles
PS51523
57 106 50 26.048
IPR006456
MobiDBLite
mobidb-lite
158 197 40 - –
Gene3D
G3DSA:1.10.10.60
180 255 76 5.8E-33 –
SUPERFAMILY
SSF46689
183 256 74 6.58E-21
IPR009057
TIGRFAM
TIGR01565
196 251 56 1.4E-27
IPR006455

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0160900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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