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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0163100 |
Transcript ID | LotjaGi4g1v0163100.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Shikimate kinase; TAIR: AT2G16790.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|B0BML1|GNTK_XENTR Probable gluconokinase; TrEMBL-Plants: tr|I1N1E4|I1N1E4_SOYBN Gluconokinase; Found in the gene: LotjaGi4g1v0163100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:30438312..30441190) extracted from Lotus japonicus Gifu genome v1.2.
CGAAGTGTTACGGATACCCTGTGTCCGAAAGAGTAGTTTTGACATTTTTTAAAAAATCTGGGGTGGCATTTCTAAGCCCT GGGTGCCAAATCCAGGGCTCCAACAAATGTGATTTTGAGATATTATCATTTGTCTATACCTTCTGTTCCTCTCTATTGTT CAATTCTCAAAGTCAAAGGATACAATTTTTCTGATCTCTGCGTCCCATACACCGCTATGGCTTCAAGCAACGGTAAATGA ATTACTATTCCTCAACGTACTTGTACACAATTAAATTCACATCTCAAATTGAAAACGTTAATGCATTTGTATTTTGGCAG GTGCAGTAATCGTGATCATGGGTGTCAGCGGAGCTGGAAAAACGTAAGTCTCCAAATCCATCTAATGGCTAAACCTCAGA TAAGATAATCACTTCATTTTGTACTTCTCTTTTTATAGATCCTTCATTTTGTTCTTATTTTGTTATTTTGCTGTCTTGGA AAATTTAGGTTTTTTCTCAATCTTCTACTTGCAAATAGATGATCCTTCATTGAGGTTGGGTTTCTTGGGGATCGGATAGG AAGGGAATGCAACAAACTAGAAGGAACTTAGAGGCTATAGAATCTGTTGGCACCTCGAGTAATCTTTGATTAGAAAATCG TTACGTTTGTTATCCCGGCCGACTGACAGGCTACAGAGACCCAAATTTATTTGAACCAAGAGAACCTATTGCACAAAATT GAATACAAGTACTCTCTCTATGTCTTTAGTAATTTTGGTTAAATAACAATCCTGATTTTTGAATACCCAAATACTATAGA TAACCCAGACATACATCTGATTTTTTCAGTGTATTTTTTCAGACAATCCTGATTTCACTCTCGTTTTAATTCGGATGTAG GGGTGTCTGGATAATATTTTCCTTAAAATAACTAACTGATTCAGAAAAAGAAAAAAAAAAACTAACTGATTCAGTGTATG GATTTGTTTGTTCTTTTTAAACCAGTTCTAAGAATTTTTTTTGAGATTTTATAATCTAAAAATGTGAGTTTTTGTGTGAA AATCAAGCAAAATCAAACATACTTTGCTTTTAATACCCGTTCTGAATGTTACCCCTGGAGGATATATGTGGTACTAGACA AAAAAAAAACATACTAGACCCTGATTTGTTAAGATTTTTCTCAGAAAAACTTAGCTGTTGGATAATTTTAAACAGCACAA TAGGTCGAAGGCTGGAAAAAGAGACAGGATATAAGTTTCTTGATGCTGATGATTTTCATTCTCAATCAAACAAAGGTGTG TACATGATGTGTATGCACAATTGTACAAACTCAATGCATCTTTGGCTGATAATATAGACTCATTAACTCCCTCACTTGTT TCTATCTGTTTCCTTTGTCCTCTACAACACAGAAAAGATGCGCATTGGAATCCCACTTACAGATGAGGACCGGATGCCGT GGCTTGAATCGCTGCGAGATGCCATTAGAAAACACTTAATTAACAAAACAGGTGTGGTTCTTGGTTGCTCTGCTTTGAAG AAGGAATATAGAGAAATACTTAGATCAGCTGAATCTGATTATAAATGGGGGAGTTATGCAAGTGCTGTTAACTTCATTCT ATTGGATGCTCCAGCTGAGGTGCTAAGTGTTCGGTTAAATAAGAGAGCTGCAGAAGGAAAACATTATATGCCTGCTTCTC TTCTGCAATCTCAGATAGATTTGCTTAGTGTTGATGAGTCTGAGGGAATACTTAGAGTTGATGCTACTCTTCGTCCTCAA TCTATTATCGACAACATTAAAAAAATGCACCAGTTTCAGGGCTGTTTTCAACCATGATTGTGTTGAGCCTCATCAGTAAA GTGGATCACCAACTCAGGTTAATTTGAACTGTTGTTGTACACACAAAAAGGAAGAAAATGATGATACAAAAAAAAGAGGA CTAGTTCGATTCATGTACTTCAATTTCTTTCCTTTTATATTTTTCTTTTTTCTTGTGTTTTTGACATGACTACCTCATTC TATGAGGATAAAACTAATCTCGATTGGATACCACTATTACATTACATATCCTACCAACAGATGACTTTTCCGCAATTTGT AAGGTGAAGGGTCAGGGTTCAAACCTTGGCTAAGGAACTAATTTACTAACAATTAACAACTAACATTTGCCTAATAAAAA AATTAAATTCTAATATCAAATATGTGACAGATCCTTTAACAGATGATTTTCCCGCGATTTGTATATCAAATAAGTTGTAC ATGCTTTGATGTCTTCGAAGTGTGATTTAATTTGTATACAATTTTGTTTCGTTAGATTGATATGTTGCTAGTTGTTACAT ACCTTTTCAAGAATCTCCTAGAATCTTCTGCATATATTAAAACTGTACCTTAATTATTGAATGTTATTATTCCTCATACG CGACATGTTATGATTAGTTGTCAGTGTAAAACAATGCATATCTATAAAACTCTTTAAATAATTCCCAAAAACATATTTTC AGCTAAACAAATCAACACAAACAAATTTATACAAAGAATTGATCGATCGAGTAACAACACTAAATTTGAATCTGACATCA TAATAAACAGTTAAGTTTCAATAAACGTTCCAAGAGGTATACTAATTGAGCTTAGAATTGCATGAGTCCTCAGCAGGATT AGCCTTGTTTTGCTTGGGATGTTTTCTTTGTTGTTATTTTTTTGCCTTGGTAAATCTGAGGCAACGGTACTTTTCACCAC TCACTGTAATTTCAAGAGCTCCATCTTGGTTATCTTGATTTGATGCAGTTCCCATTAACACACTTTTCTCTTTCTCAAGA TTGTCTCTTTCCATCTTCAGTCTTGCTTCTTGACGAGCAATCTCTGCCTGGAAAATAAAAAAGTAAAATATTCAGGACA
CDS sequence (LotjaGi4g1v0163100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAAGCAACGGTGCAGTAATCGTGATCATGGGTGTCAGCGGAGCTGGAAAAACCACAATAGGTCGAAGGCTGGA AAAAGAGACAGGATATAAGTTTCTTGATGCTGATGATTTTCATTCTCAATCAAACAAAGAAAAGATGCGCATTGGAATCC CACTTACAGATGAGGACCGGATGCCGTGGCTTGAATCGCTGCGAGATGCCATTAGAAAACACTTAATTAACAAAACAGGT GTGGTTCTTGGTTGCTCTGCTTTGAAGAAGGAATATAGAGAAATACTTAGATCAGCTGAATCTGATTATAAATGGGGGAG TTATGCAAGTGCTGTTAACTTCATTCTATTGGATGCTCCAGCTGAGGTGCTAAGTGTTCGGTTAAATAAGAGAGCTGCAG AAGGAAAACATTATATGCCTGCTTCTCTTCTGCAATCTCAGATAGATTTGCTTAGTGTTGATGAGTCTGAGGGAATACTT AGAGTTGATGCTACTCTTCGTCCTCAATCTATTATCGACAACATTAAAAAAATGCACCAGTTTCAGGGCTGTTTTCAACC ATGA
Protein sequence (LotjaGi4g1v0163100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSNGAVIVIMGVSGAGKTTIGRRLEKETGYKFLDADDFHSQSNKEKMRIGIPLTDEDRMPWLESLRDAIRKHLINKTG VVLGCSALKKEYREILRSAESDYKWGSYASAVNFILLDAPAEVLSVRLNKRAAEGKHYMPASLLQSQIDLLSVDESEGIL RVDATLRPQSIIDNIKKMHQFQGCFQP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 180 | 180 | 1.1E-56 | – | |
SUPERFAMILY | 3 | 178 | 176 | 8.81E-26 | ||
PANTHER | 5 | 182 | 178 | 6.8E-64 | – | |
PANTHER | 5 | 182 | 178 | 6.8E-64 | – | |
CDD | 8 | 157 | 150 | 2.50568E-55 | ||
TIGRFAM | 9 | 175 | 167 | 1.9E-44 | ||
PRINTS | 9 | 24 | 16 | 1.0E-6 | – | |
Pfam | 15 | 133 | 119 | 3.7E-14 | ||
PRINTS | 33 | 46 | 14 | 1.0E-6 | – | |
PRINTS | 112 | 129 | 18 | 1.0E-6 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
Molecular function | Kinase activity | Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. |
Expression pattern of LotjaGi4g1v0163100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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