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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0163800 |
| Transcript ID | LotjaGi4g1v0163800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NHL repeat-containing protein; TAIR: AT1G23890.2 NHL domain-containing protein; Swiss-Prot: sp|Q8NBF2|NHLC2_HUMAN NHL repeat-containing protein 2; TrEMBL-Plants: tr|A0A072TRZ8|A0A072TRZ8_MEDTR Plant/T23E23-13 protein, putative; Found in the gene: LotjaGi4g1v0163800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:30823921..30827876) extracted from Lotus japonicus Gifu genome v1.2.
TTGGAACTTCAATTCGGATCAACCTCATAGGAATGCATTTCAAAATGGTCATGACCATTGGCATTTCGAGATTATCCTTT GAGCCTGCGTTTCGAGCTGATCATGAAAGTTTGCACTTTGAGCTGGTCTTCATGCTAATGTTCATATTAGACAATCAAAG CCTTTGAACTAAACAATGGGACCTGTCTTCAAGCTAAAAGCTTTCTTCTTGAACTGGACTTTGGTATTTCCGAAATGATC AGTTTTTTTTTTTTTTTCTGGTCAGTACCATGTTACCTACTGGTTTTTTCTTAGTAAGGTTTTAACGCAACATATTCTTA AGAATTGAGCATTCAAGGGGGAGTGTCATAAAAAATTGGATGTCCATCAGAGTCAGGAGCTAGGATTAGATGAAAAATCT ATACGCCAAATCCATGTGTATACTTAAATATAAGGGATGTTGCACATAGTTAAGCATCCCATAATAGTATTTCTCTCTAT TGTTTCAATCTTCTCCTCTCTTTATTTATTTACTTGTTTATTGGGATGGATTGTTAGATATTTTTTTGTATTTTCCTAAT CTGTAGGGGGTTGTTAGTAGATAGTGGGGTGAAGAGGCTAATAGAAAGTAGTTTTATTTATCTGTTTTGTACATTATTAG GAGGAAGTTCAGATTTTATTTTCTGTTAATTAGTCTTATCTATCCTCCATGTACGTAGTCTATTTAAATTTTAAAGGGTT AATGCCTAATGAATAAATCAGAATATTCCTCACTGTCCATGGGTACAAGACTACAAGGAGTCCAAAACACTGAACAGTAG TCACTCTTGCTTGAAGCGTTGGAGCATAGATGGCTTATCCTTCATCTTCTTCTTCTACTTTCCTTATGTTTCCACTCTTC CTCTTTTTCTTCCACATCGGAAATGGTAATCATCGATCGTTAACTGCTTGCATTTTTTCATCTCTATTTTGGTTTCATTT TTCTCGTTTTTCAGTTCACGGCAAAGTTGTCATTCCCGAAGACGGTTACACCGTCACCACCGTGCTCGACGGCCACAAGC ATCACATCAACCCCTATTCCGTCCTCCAGCGACCCGGTTCCTCCGATCTCATCGTTCTCGATTCCGTCAACAGCGCTTTC TACACCGTGCAGTTCCCCATATCCCAAGGTTTCATCTTTTTCTCGTCTTGTCATCAGAGTTTCAATCTTTTTGTTGGTTT TGTGATTATTTTTGGTTTCTCTGTTGCAGAAAGTGTTTTCACCAAGTTTTCTGGAAATGGGTCTCCTGGGTATTCTGATG GTGATGTGGGTTTAGCTCAATTTGATAAGCCCAGAAGTTTTGCCTTTGATCTGAGGGGGAATATGTATGTTGCTGATAGG TCCAATCAAGCAATTAGGAAAATCACTGCAAATGGTATGCTGTATGTGTTGTTTGCATCCAAATTAGAATAACTTATGTC ACAATCAGTTTTGGCATAATTTAGAATAAACATGATTTTAGTAATTGTTCTTAAATGTGTGGTTAAGGTTGATGGTGATT GTGAATTTTGTAATAACTTCAGGTGGCTGTGTTGTGCTGTTATAGCAAATGATAACATTCCTTAATTTTATCTGTTATGG TCCCTGACTAGGTGTAACTACAATTGCTGGTGGGTTCTCAGAAAAGTCAAGCAGACAGGATGGACCTGCAAATAATGCAT CACTTTCAAATGATTTTGAGCTGTCTTTCATCCCTGGCTTGTGTGCTTTACTGGTGTCAGATCATATGCATCAATTAGTC TATCAGATTAATCTGAATGAGCAGGATTGCACACTTGGTTCCAAGTCTGGTGAGATTTTAGAATTTGGGTAATTTTATAG TTTTGACTTTTGTTTTTCACATTTTTATGTAATTTAAGAGTATAAGAGTAAATTCACAGACATTTATTGAGTGGTTATGA TTTCTTCTATGACACCCTCCATCTTTTGCTTTGAAAGCATTATAAAGAGCAAACCAAGCCTATGACGCTTGGATGCTTGG ATATTTGTAGAAATGCAGGATTCATGAACATAGCAAAGGCAAACCGTTCAACTTTATGCTATACTTAATTTAGCTAATTT TTATCATATTGATATTACGAAAACTTCTATTTATTTATAAACTATAGATGTAACTCATCCCTCATCGCTCGTCAGTCTTT TATGACCATCACTCATAAGTTATTTCATTAAACGAGATATACAAATAAATATTTTTGGTTGCCATACATCATTCATGATC ACTTTTGAACTCGGGTTTTGATAGGATGAACAGTGCGCATGAACAGTGCTCGTGAACAGTAGCAGTTAGAAAGTTATTAT TTGATTATTTGTTGGGGTAGTTATTGGGTTAGTTATTTACATCAGTTTATGTTAGTTATGTTCTATCAAAACTTCCTAGG GGTGGTTATTAAATTTCTAGTTATAAATAGGAGTTGTGGCTGTTAGTTTAGACATTCAGAAATTGGGTGGTTGTCTTAGG GAGAGACTGGACTCTCAAAATTCCAGAATTTGTAGGAGAGAACTGGCTCTCGAACACCAGTACTTCCATAAATATTCTGT AATAAATTCGGTTCCTATCAGGTTTTTCTTCCTGAGTTTGGGCAAACAAGTTAGCTCGGCAGCTTTACTTCATTTTTATT TTGCACAATTTTAAAAACAATCTTGACTGAAACTTGTCTTTGTCCCTGTTCTGTAACACTGGTATTTTTGCTGTTTCCGT TGTACTCCTTGACTTATGAAACATGAATTCAAGAGAATGATTTTCTCCCTTTCCAGACCTAATTTCAAACTCCCTTAACG ATTAACTTCTTTTGAACTTCTTTTTGTTTATTCATTTTCTTGTTAACCATGATTCTTGAAAATGACTAATGTCAGCTATT GAAATTTGAACTATTTTTGTCATTGGATTTCATCTCTACTTTAGTTTTTGGCGTGAGTTCCTCTTAATCCATCGTGGATG CATGAACATTTTATTAATATTCCATTGCCTTGTATCTACTATCTACTCTTGAACTATGATTCAGTTATGATGATAATTAT CTATTTTGTTCCAGGGCTTGGTGCAGTTATGACATGGACTCTAGGATTAGGACTTTCATGTTTACTAGGCTTAGTAATTG GGATCGCAGTCCGCCCTTATATCATCCCTCATGTAAGTTCTTTTCAACTTGTTATGAAGATTTTATATGGCAAAGGGTTT GCTTACACCTTTTCTAACTGAATTGTGTAGACAGGAAGGTTCCAGCCCTTACCATTTCACCGCGACATGGAAGCATTGCC TAACCAGTCTGGGGAATCTAGTACGGAAACTCTTCTTCGGCATCAAAAGCGCAATTGCTAGCTGCAATTTGTCCTCCATT TACACTGTCCTGACTACACTTTGGAGACTGACTATCTCTCATCTTCATCTAATGTTTAGCATCAATATACTTTCTCCAAC TCCTAGGCCACATTTGGAATCTGTATCTTTGCTTGATTTAGATGCCTGTAATAGTGGTGAGATAGCAAAGTCAAGCAAGT ATCATGACCAGTTAAAGGATTTAATGAGTTTTGATGAAGACCTTAAGGATTCAACAAAGGCAACCTTGTCCAACCAAGGA AATGATGCTAGTGATGTCATGATGCAGCTTAATATGGGTTTTGCTGAAGCACCTAAAAGTAACTTTCTTCATCAAGAATC ATCTGTATGTAGTTTGGGTATTGTCAAGCGGAGGTAAGGCTATTTGTACCAATGGACTATGTTATGTGAGTAGAATGCAA ATAATATCGTGTTATTGTCATGGGCATAATTTGGGCGTTGTGAAGCGCAAAATACAGAACAATGTTCAATGACTAGTATG TAAATTCTGTCACCAGCATCGTGTTTTTGATATAACAAAAACCTTGTAAATTATTGATACCTGTACGATCATCAACCTAT TAATTATATTAATTATTTTAAAAAATCAAATCAAAT
CDS sequence (LotjaGi4g1v0163800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTATCCTTCATCTTCTTCTTCTACTTTCCTTATGTTTCCACTCTTCCTCTTTTTCTTCCACATCGGAAATGTTCA CGGCAAAGTTGTCATTCCCGAAGACGGTTACACCGTCACCACCGTGCTCGACGGCCACAAGCATCACATCAACCCCTATT CCGTCCTCCAGCGACCCGGTTCCTCCGATCTCATCGTTCTCGATTCCGTCAACAGCGCTTTCTACACCGTGCAGTTCCCC ATATCCCAAGAAAGTGTTTTCACCAAGTTTTCTGGAAATGGGTCTCCTGGGTATTCTGATGGTGATGTGGGTTTAGCTCA ATTTGATAAGCCCAGAAGTTTTGCCTTTGATCTGAGGGGGAATATGTATGTTGCTGATAGGTCCAATCAAGCAATTAGGA AAATCACTGCAAATGGTGTAACTACAATTGCTGGTGGGTTCTCAGAAAAGTCAAGCAGACAGGATGGACCTGCAAATAAT GCATCACTTTCAAATGATTTTGAGCTGTCTTTCATCCCTGGCTTGTGTGCTTTACTGGTGTCAGATCATATGCATCAATT AGTCTATCAGATTAATCTGAATGAGCAGGATTGCACACTTGGTTCCAAGTCTGGGCTTGGTGCAGTTATGACATGGACTC TAGGATTAGGACTTTCATGTTTACTAGGCTTAGTAATTGGGATCGCAGTCCGCCCTTATATCATCCCTCATGAAGGTTCC AGCCCTTACCATTTCACCGCGACATGGAAGCATTGCCTAACCAGTCTGGGGAATCTAGTACGGAAACTCTTCTTCGGCAT CAAAAGCGCAATTGCTAGCTGCAATTTGTCCTCCATTTACACTGTCCTGACTACACTTTGGAGACTGACTATCTCTCATC TTCATCTAATGTTTAGCATCAATATACTTTCTCCAACTCCTAGGCCACATTTGGAATCTGTATCTTTGCTTGATTTAGAT GCCTGTAATAGTGGTGAGATAGCAAAGTCAAGCAAGTATCATGACCAGTTAAAGGATTTAATGAGTTTTGATGAAGACCT TAAGGATTCAACAAAGGCAACCTTGTCCAACCAAGGAAATGATGCTAGTGATGTCATGATGCAGCTTAATATGGGTTTTG CTGAAGCACCTAAAAGTAACTTTCTTCATCAAGAATCATCTGTATGTAGTTTGGGTATTGTCAAGCGGAGGTAA
Protein sequence (LotjaGi4g1v0163800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYPSSSSSTFLMFPLFLFFFHIGNVHGKVVIPEDGYTVTTVLDGHKHHINPYSVLQRPGSSDLIVLDSVNSAFYTVQFP ISQESVFTKFSGNGSPGYSDGDVGLAQFDKPRSFAFDLRGNMYVADRSNQAIRKITANGVTTIAGGFSEKSSRQDGPANN ASLSNDFELSFIPGLCALLVSDHMHQLVYQINLNEQDCTLGSKSGLGAVMTWTLGLGLSCLLGLVIGIAVRPYIIPHEGS SPYHFTATWKHCLTSLGNLVRKLFFGIKSAIASCNLSSIYTVLTTLWRLTISHLHLMFSINILSPTPRPHLESVSLLDLD ACNSGEIAKSSKYHDQLKDLMSFDEDLKDSTKATLSNQGNDASDVMMQLNMGFAEAPKSNFLHQESSVCSLGIVKRR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| PANTHER | 7 | 368 | 362 | 3.1E-137 | – | |
| PANTHER | 7 | 368 | 362 | 3.1E-137 | – | |
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 10 | 21 | 12 | - | – | |
| Gene3D | 16 | 201 | 186 | 9.2E-22 | ||
| Phobius | 22 | 28 | 7 | - | – | |
| Phobius | 29 | 208 | 180 | - | – | |
| SUPERFAMILY | 33 | 194 | 162 | 1.02E-7 | – | |
| Phobius | 209 | 230 | 22 | - | – | |
| TMHMM | 213 | 235 | 23 | - | – | |
| Phobius | 231 | 397 | 167 | - | – | |
| TMHMM | 269 | 291 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0163800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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