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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0167400 |
| Transcript ID | LotjaGi4g1v0167400.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ADP-ribosylation factor; TAIR: AT5G14670.1 ADP-ribosylation factor A1B; Swiss-Prot: sp|P51823|ARF2_ORYSJ ADP-ribosylation factor 2; TrEMBL-Plants: tr|A0A151SJJ5|A0A151SJJ5_CAJCA ADP-ribosylation factor 2; Found in the gene: LotjaGi4g1v0167400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:31887410..31890470) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGCTGACATTCACCAAGCTTTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGAATTCTGATGGTTGGTCTTGATGC CGCTGGTAAGACCACCATCCTTTACAAGCTCAAGCTTGGAGAGATCGTTACCACAATTCCTACCATAGGTAAGTTTCTCG ATTGTTCTATTTCTTATGAGTTATGCTTACAGTATGTTAGGCTCATGTGCTTGTGTTATTGTGTGTAACTGTGTATAATA CTTCACCTCTAGGGATATTAATATGCATACACACCCATTATTGATCCTTTATGATAACTTCACTTATCTTAGCTAAATTA CTGTATTTCGTTTTCAATAAGCTTTTAATATGAATCATACATTGATAAATCTGTATAGAAGTCTAAACTTGAATCATACA ATGATACAATGTGTGATGCTTCATATGAAATCCCTGATTAACCTTTTCCTACCTCGTGTTACTTTGGACCTACGTATTCT CCATGAATATTGTGACTGTTTATGCTGCTTCTATGTGTATGGATTTATTTTTATTTTTCATATTACAGGGTTCAATGTGG AGACTGTGGAATACAAGAACATTAGCTTCACTGTTTGGGATGTTGGGGGTCAGGACAAGGTTTGAAGTTTGATCCTTATG CCTTTATGGTTCTGAGTTAAGTCTTGGAGTCAGTGGCTTAATACTTATGCTTTGATTTGCAGATTCGTCCCTTGTGGAGG CACTACTTCCAGAACACACAGGGTCTTATATTCGTTGTAGACAGCAATGACAGGGACCGAGTTGTTGAGGCCAGAGATGA GTTGCACAGGATGTTGAATGAGGTACCATAGTCAATTTGGTTAAGCTTTTAGGTCATCATATTTGATGTCTTTGTTCTCA TGTGAGTTCATGTTAGATATTCATCTGACACTTTAGAGTGTAGATAGAAAGTTCTCACTATCATATTAAATCATTTGTTT TCTATTGTCTGTTAAAATGTGTATATATATATATATGTATATATATATAACTAAATTGCTATAGTATTGGTTGCTTGCTC ATAATACTCCTAGATAGTATTGTTTGGGATATATCTTTGATATGTTGGAATAAGTATAGTCTTGTTATTTACTGCGTTGT CAGAGGAATTGGAGTACGTACTCCTTTATTAATTTGTTGAAGAGAAACAAAATGGATTCTAAAAGTGCAAAGGCTTTAGC TTATATAACAAAATGGATTCTAAAATTTTGACTAGGAAAGATAATGAGTATACTAAAGAAAAGACAGGGTTGTTGGATAT TAGTTGAGTTTTACATGATCTATTTAATGATGGCTGTGTAATTATTGAATTGGCCAAATCATCTATTGATGAACTAGACA TAGAAGCTATACTTTTTTTCTAATGATGGGAATGGGAGGGATGAAAAAAATATAATTATGGCAGTAAATAGTGGGCTCGT TTGTTTCTGCTAAAAAATAAGTGATTTAAGAGTTGAATAGAAATTTGATTTTATTTGAAGAGATTTTATTAAAAGCAGAA ATTAAATTTTTGTTTACAAATATAAAAATTGCTTTTCACTTAGAAAAGTTACTAGAAATAATTGATTATTTTAAATCTAC TAGAAATAACTTAAAGAAATAATCAGATTTCTGCTTAAGTGTATACAAACAGTACTAACAGTTCAAAAAATGCATAAATT GATTTTTTTTTTAAATAAGTGACTATTTCACAAAAAAAAGCAGATACAAATGTGCCCAGTAATTTAATAGAGCAAGCAAG GGATTTTAAATAGGAATAATGGTGTTTTTCATGACATTCTGATATTGGTTGGAAAAATGTGTTATTTATATAACAGGTTT ATGAAGTTTTTGTTGATTAGAGTGCAAACTTTGGTTGTTTTTCTATCATTGAAGAGGACCACCTAGCAGAAAGCTTTTCT ATTTACATTAAAAGCAAAGGATTTAGCGTATGTTTGGTTTCAATTCTTGCACTACTAGATGTGGATCAATCTTCCCAAAA GAAACTATTTATTGCTTCGAGTTGATGAGGATCCCTACTATGTGTGGATCCACTTGTATTTTCCAAACTCACACTTAAAT AGGAATGACATTGTTTTTCTTGACATTGATTGGAAAAATATGTAATTTAAATAATTTCTTTATGAAGTTTTCGTTGGTGA GTGCAAATTTTGTTTTTGATATTGTGCAATGGTGCTGGGTGATCCATGTAGTCAACCTTGCTTAGTGGGTAAGACTTGTT GTTTATGAGGCTGTGTTATCATATATTGAGTTTCAAAGGAGTTTTGAAGAATTCACCGTGTGTCCTATTAATCATTTCGT AGCTGAAGCAGTCAGCACTTTTGTAACTGCAATTGTTAATGATGATATAGTAGTCTACCAACTGATGTTCAGTTGCTTAA AATGGGTGTTTTCCTATCAATGAAGAGGACCACCTAACATGAAGCTTTTCTAATTTCTATCTATGGTCACTTTGTTATTG GACCCATTTTTTTTCCTGGATTGTAATATCTGTAATGTTGTACTTGTCTACTTGATAATCATTTTGATGGTATATTTTGG AAGTTGGATACCAGTTCATTCTGGTCAAGCTCCTGGGAAGATAACAGCACATTGATTGGCCTTTTGGCCAGAATCAATAG CATGTCTATACTGTTTCTTTCTGTTAATTATATTCTTGTGATAAATTTGGCATAATCCTGGAACTGTATATTTTAATTAT CAGGATGAACTGAGAGATGCAGTACTACTTGTATTTGCTAACAAACAAGATCTTCCCAATGCAATGAATGCTGCTGAAAT TACTGACAAACTAGGTCTCCACTCTCTCAGACAGCGTCACTGGTATATATTTTGATCACGTTGCCCTTTCTGTCCAGGAT TGATAGTTCTCTCGTTGTGAGCTAACATGCTTTGTGGTTTTTTCAGGTACATCCAGAGCACTTGTGCAACCTCTGGGGAG GGGCTTTATGAGGGTTTGGACTGGCTTTCCAACAATATAGCCAACAAGGTAGCTATTGATTTCCTGTCCAAATTTTGATT GAAATTGTATGTTACAAGTAA
CDS sequence (LotjaGi4g1v0167400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCTGACATTCACCAAGCTTTTCAGTCGGCTTTTCGCCAAGAAGGAAATGCGAATTCTGATGGTTGGTCTTGATGC CGCTGGTAAGACCACCATCCTTTACAAGCTCAAGCTTGGAGAGATCGTTACCACAATTCCTACCATAGGGTTCAATGTGG AGACTGTGGAATACAAGAACATTAGCTTCACTGTTTGGGATATTCGTCCCTTGTGGAGGCACTACTTCCAGAACACACAG GGTCTTATATTCGTTGTAGACAGCAATGACAGGGACCGAGTTGTTGAGGCCAGAGATGAGTTGCACAGGATGTTGAATGA GGATGAACTGAGAGATGCAGTACTACTTGTATTTGCTAACAAACAAGATCTTCCCAATGCAATGAATGCTGCTGAAATTA CTGACAAACTAGGTCTCCACTCTCTCAGACAGCGTCACTGGTACATCCAGAGCACTTGTGCAACCTCTGGGGAGGGGCTT TATGAGGGTTTGGACTGGCTTTCCAACAATATAGCCAACAAGGTAGCTATTGATTTCCTGTCCAAATTTTGA
Protein sequence (LotjaGi4g1v0167400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDIRPLWRHYFQNTQ GLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGL YEGLDWLSNNIANKVAIDFLSKF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SMART | 1 | 171 | 171 | 6.7E-20 | – | |
| SMART | 1 | 175 | 175 | 7.5E-126 | – | |
| PANTHER | 1 | 174 | 174 | 1.3E-144 | – | |
| PANTHER | 1 | 174 | 174 | 1.3E-144 | – | |
| Pfam | 5 | 171 | 167 | 5.0E-72 | ||
| ProSiteProfiles | 11 | 171 | 161 | 23.079 | – | |
| SUPERFAMILY | 14 | 174 | 161 | 4.13E-52 | ||
| TIGRFAM | 16 | 151 | 136 | 1.4E-16 | ||
| Gene3D | 18 | 171 | 154 | 3.8E-63 | – | |
| CDD | 18 | 170 | 153 | 1.61442E-118 | – | |
| PRINTS | 19 | 42 | 24 | 1.8E-7 | ||
| PRINTS | 113 | 134 | 22 | 1.8E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi4g1v0167400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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