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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0168600 |
Transcript ID | LotjaGi4g1v0168600.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Defensin fusion; TAIR: AT4G30074.1 low-molecular-weight cysteine-rich 19; Swiss-Prot: sp|P82733|DF183_ARATH Defensin-like protein 183; TrEMBL-Plants: tr|G7ING8|G7ING8_MEDTR Defensin fusion; Found in the gene: LotjaGi4g1v0168600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:32400129..32400778) extracted from Lotus japonicus Gifu genome v1.2.
ATAAACTTGACAAAGAATTTCACCCTGATGGCTAGCCACCTCAAAAATTCATTTAATTTCTCTGCCTTCCTGATTTTAGT TTTCATTGGTTAGTCTTTCTTTTAATATTTTTTTGATGCTAAAACATATATTATTTGAATTCCCACTAACCGTTTTCTTT ATTATATAGTGCAATCAACAGTGGAAGGAGAAACATTATGCGAACAAATTGTGGGTAAATGTGAATCGTCGAAGGTAGCA TGTCCTGAGCATTGTGTGGCGTTGTGGGGGAAGAAGTTCAAAGCGGGGATTTGTGATGTCTATAACGTATGCAGCTGTGT TTTCTATTGCAATCCCCCACCTCCAAAGATGTGCACCATAGAATTGGGACGTTGCAGCTCTCATTGCAAGTCAGGTTGTG CTTCAAATTATAACCATGGTCAGGGGTATTGTAATGCAAAATACGGCCTCGATTTGTGTATTTGCAAATATAATTGTTGA GGTTGAATTTCAGATTTGAACCTACAAACTCCTAGTTGCATTGGATAAACCAAGACAGTAGTGTTGCAAGTATTTTCACA AATATAATTGTGGAACCGAATTGAATCTAATCCTCCTTCAAACTTGTTTGGGTGGCATTTAATAATATTTTTCGAACATT TATTTTTTAA
CDS sequence (LotjaGi4g1v0168600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGCCACCTCAAAAATTCATTTAATTTCTCTGCCTTCCTGATTTTAGTTTTCATTGTGCAATCAACAGTGGAAGG AGAAACATTATGCGAACAAATTGTGGGTAAATGTGAATCGTCGAAGGTAGCATGTCCTGAGCATTGTGTGGCGTTGTGGG GGAAGAAGTTCAAAGCGGGGATTTGTGATGTCTATAACGTATGCAGCTGTGTTTTCTATTGCAATCCCCCACCTCCAAAG ATGTGCACCATAGAATTGGGACGTTGCAGCTCTCATTGCAAGTCAGGTTGTGCTTCAAATTATAACCATGGTCAGGGGTA TTGTAATGCAAAATACGGCCTCGATTTGTGTATTTGCAAATATAATTGTTGA
Protein sequence (LotjaGi4g1v0168600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASHLKNSFNFSAFLILVFIVQSTVEGETLCEQIVGKCESSKVACPEHCVALWGKKFKAGICDVYNVCSCVFYCNPPPPK MCTIELGRCSSHCKSGCASNYNHGQGYCNAKYGLDLCICKYNC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 10 | 10 | - | – | |
SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
SignalP_EUK | 1 | 27 | 27 | - | – | |
Phobius | 1 | 27 | 27 | - | – | |
PANTHER | 1 | 123 | 123 | 8.2E-21 | ||
Phobius | 11 | 22 | 12 | - | – | |
Phobius | 23 | 27 | 5 | - | – | |
Phobius | 28 | 123 | 96 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0168600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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