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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0169000 |
| Transcript ID | LotjaGi4g1v0169000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Defensin fusion; TAIR: AT4G30074.1 low-molecular-weight cysteine-rich 19; Swiss-Prot: sp|P82733|DF183_ARATH Defensin-like protein 183; TrEMBL-Plants: tr|G7ING1|G7ING1_MEDTR Defensin fusion; Found in the gene: LotjaGi4g1v0169000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:32497916..32498452) extracted from Lotus japonicus Gifu genome v1.2.
CTTGACAAAAAAATTCACTCTAATGACGAGCCACCTCAAAAACTCATTTAATTTCTTTGCCTTCTTAATTTTAGTTTTTC TGGGTTAGTCTTTCTTTTATTATTTTTATGATGCTAAAATATATATGATTTGAATTCCCACTAACCATTTTCTTTATTAT ATAGTGCAATTAACAGTGGAAGGAGAAATATTATGCTCACAAATTGTGGGTAAATGTCAATCCAAGAAAGCATGTTCGGA GTATTGTATGTTTTTTTTGGGGGAGAAGTTCAAAGCGGGGTTTTGTGATGTCTTTAACGTATGCAGCTGTGTTTTTGATT GTGGTCCCCCACCACCAGGACGTCCAAGGATGTGCGGCATAGAATTGGGACTTTGCAGTGCTCGTTGCAAGTCAAATTGT GCTACAAATTATAATCATGGTCAGGGGTATTGTGATGCTAAATACGGTCCCAACTTGTGTATTTGCAAATATAAATGTTG AGGTTGAATTTCAAATTTGAACCTACAAACTCCTAGTTGCATTGGATAAACCAAGAC
CDS sequence (LotjaGi4g1v0169000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACGAGCCACCTCAAAAACTCATTTAATTTCTTTGCCTTCTTAATTTTAGTTTTTCTGGTGCAATTAACAGTGGAAGG AGAAATATTATGCTCACAAATTGTGGGTAAATGTCAATCCAAGAAAGCATGTTCGGAGTATTGTATGTTTTTTTTGGGGG AGAAGTTCAAAGCGGGGTTTTGTGATGTCTTTAACGTATGCAGCTGTGTTTTTGATTGTGGTCCCCCACCACCAGGACGT CCAAGGATGTGCGGCATAGAATTGGGACTTTGCAGTGCTCGTTGCAAGTCAAATTGTGCTACAAATTATAATCATGGTCA GGGGTATTGTGATGCTAAATACGGTCCCAACTTGTGTATTTGCAAATATAAATGTTGA
Protein sequence (LotjaGi4g1v0169000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSHLKNSFNFFAFLILVFLVQLTVEGEILCSQIVGKCQSKKACSEYCMFFLGEKFKAGFCDVFNVCSCVFDCGPPPPGR PRMCGIELGLCSARCKSNCATNYNHGQGYCDAKYGPNLCICKYKC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 125 | 125 | 6.9E-23 | ||
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 12 | 23 | 12 | - | – | |
| Phobius | 24 | 27 | 4 | - | – | |
| Phobius | 28 | 125 | 98 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0169000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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