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LotjaGi4g1v0171200.1

Overview

Field Value
Gene ID LotjaGi4g1v0171200
Transcript ID LotjaGi4g1v0171200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description ADP-ribosylation factor GTPase-activating protein; TAIR: AT4G17890.1 ARF-GAP domain 8; Swiss-Prot: sp|Q8H100|AGD8_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD8; TrEMBL-Plants: tr|I1KX25|I1KX25_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0171200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:33464410..33473184) extracted from Lotus japonicus Gifu genome v1.2.

AACGCCTTAACACATTTGTCTGCAGGGCAATTCCGTCATTTCCCAATAATTTCTTTCCCTTTGCTAATGGAAGAAAGTAC CTTTTTAAAGACGATGGAAAACGAGAAGAAAACACAAACGCACAAACAACACTATTTGTGGTTTCCACCTGCAAATTTTC CTCCCCTTAAATCCATTGCTCAGGAGGTGTTCCTTTTTCCACCAAACACCCCCTGAGATTCATTTTCCCAAAAAAACTAC CCAAAAAAAAAAGAAAAAACAGAAAACTTCAGTTCCAGTTTCAATTTTCGTTTTCCGTTTTGATCTCAATGGCGTCTGAA GGCTTCACCGACAAGAATGTTGTGTTCAAGAAACTCAAGACGAAGTCTGAAAATAAGGTTCTTCCTTTTTCATACTTTTA TCATTCGAATTTTGAATTTATATGATTATTTGATTTCACTTTAAATTTTTCATATGCTTGCTGCGTTTTTGCTAGATCGA GTTTCAGATCTGCGTTTGGTTATTGAATTTTTTTGTGTGCGTTTTGTTTCAGATGTGTTTCGATTGCAATGCGAAGAACT CAACCTGGGCGTCCGTCACTTATGGGATCTTCCTCTGCATCGATTGCTCCGCGGTTCATCGTGGTCTCGGCGTTCACATC AGCTTCGTGAGGTAAGTTGTTGCTTGATTTTGGTTGTTGAATGCTGAATTTGGTTGTTGATTTTTCTATGCGGAAGTGTG CGTATCAGTTTGCAATTTTATTTTATGACTGACTCTATTTTGTGCAATGGCGAGGTCTGAATGTGCAAATGGATCAATTT AGGGTAGTTCGTTAATTTACTTTCGGTGTCATCTTTTAGAAATTTCCCCAATTCAAATGGTTTAATGAAATCAGACTCCG AGGTATTGTCTGTAATACGTAGTTTGGAATTTTATTAGCAGTTTAACTAAATAATTTTGTAGAGGGGGGGTAGACATGGG ATTTACATTTCATGGCATTGGCAGGTGGGAATGCAGGACATTTGTTGGAAATCAGGATAACATAAACACGGAAAAATAGT TTATGAAATGGGTGGGATAGCTAAAAATATAGCTAGAAAAGCTTTTATCTATAGCAGCATTTTGTATGTGGGATTTATAA TTGATTTGAAAATATCATTTTTGTGGGGGCAGGGTGGTGGTAGTGTTCAATTTGGTATTCATAGTACATGACTTTGGTTT GAAGCTAGCTTTTAAATTGAGTTATGATCTTTGCACTGACTTCATTATCAGACCCTCCGAAATAGACTCATCTGGATCTT TCAGAAAAATTTACCGTGGAACCATGGGATTACCCATTTGTTTACATGAGAGTATGTGAGGACTCACAAAACCTGAGCAA GTATCCTTGTTTCCGATAGCATTTACTTTATTTTTTCTGTGTTACATGATAAGAGTCAGGATGGAAGGATGAAATCCTTT TTGTTATGCTTTTCGAGTTGTGAGGTGGGGTAAGGACAGAGTGGGATAGTTGAAAATTAAAGAATCAAACTTGGACCCCC CCTATAGGTGAGTTTACTTCTTTAATGAGTCAGAGGTTTTTTAAGACCAAGAGAAGACTTCACTTTTCTTCCCTGTGAAC CAGCATTTTAGTTTTTTTGTAATGAGTAGATGTCTGGAAAAAAATAAGCAGAGAGCATTTGCTTAATAAAGTTTATTTGG GCCAGAGGGGTGTTAAGTGTAATTTCTTAATCTTGAGGGATTCAATAAGCCTCAGTTTTATCTCTAAATTAAAACATCTA GCCTTTTGCTTTAGCGTCTTTGATTTATACATTGTTTTCTTTGAATTACATTTCAATCAAAAGGGAGGAAGTAATAGAAA ATGAGGAAGAAGGCAGAATTGATTGATACCTAAATGTTTTTTCATATGTAGATCTACAAATTTAGACTCATGGAGTCCTG AGCAATTGAAAACAATGAGCTTTGGAGGAAACGGTCGTGCGCAGGTTTTCTTTAAGCAACATGGTTGGACTGACGGTGGC AAAATAGAAGCGAAGTATACATCCAGAGCTGCAGAATTGTATAGGCAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGGC TGAGGAGGCAAGCTTGCTTTCATCGCCTGTTGCTTCTCAGTCTGCCCAAGGGGTTAATGGACTTGCTGATGTTAAGACCA ATGAATCACCGAAAGAAAACACTTTGGAGAAGCCAGAAAAGCCTGAGAGTACTTCTTCACCTAGAGCACACACAGCGGTA TCAAATACTATGAAGAAGCCTATTGGGGCTAAAAAAGCTGGGAAGAGTGGGGGGCTTGGTGCCCGTAAGCTCACTAAAAA GGTATGTGGGTAGCTATCTTTATTTGCAGATTTTATGCGAGAAGAGCCTGTTGGTTAATTGGTTTATGATTATCTTATTC TCTATTTTACTTTGATGATATGAATATCAATTGTTGACAAATGACTTCTGTGAAATACAGCCAAGTGAGTCTCTCTATGA GCAGAAACCTGAAGAACCACCTGCTCCGATCCCATCCACCACAAACAACAATTTATCTGCTGTGCCATCTCTGACGTCTC GATTTGAGTATGTTGAAAATGTCCAGTCATCCGAGTTGAATTCTGGAGGTTCAAATGCAATAAGTCATGTTTCTGCACCA AAGGTATCAAGCTTCTTTTCAGACTTTGGAATGGATAGTGGCTTTCAGAAGAAATCTGGGCCAAGCTCTTCAAAAGTGCA AGTAAGCTGCCTACAAATTTTGCCCCTGCATAGTGTAAACTTCTATTACATGTGATTATCATACGGTATCTATTTATGCA TCTCTTAAAATTTTGGTTGAGTCTCCATGCAGTTTCAAGTTCTTAACATGATACAGATCCATGGACGAGAACATGTTAGT CCTGGCAGGCTAGTGTTTTATAGAAAAAGAAATACTATCATACAAATTTAGAGTGGTGTGTTAAAAATACATTTCAGGTT AAATACACTAACAACTAAGCATTCCCAATTTGTTTTAAAAAACTTATGAGCTTCCCTAAGCTTTAATGAGGAAGAAATCT TCTTAATTCTTTTTTCAAGTTAGGCCGGTGTAATTTCAAAAACTAGGAGATTTGTATCATGTTAGGTTGGCTGAAGACCA CTTGATTGCAAGTTTGCAGGTTGTGTGCTACTATGATATCATCATTATGATCTTATATGGTTTTGTAAGAGCACTTTCAA TACACTTTAGAACTACAATTGTATAACCATGACGTCACCAAGGAGTGCTAGGAGTAGAAATGAACTTGAGTAAGACTCAA TTGTCTCTGCATGGTTATTTTTCCAGTTCTTCCCTAGCTAATTGCCTTCGCTGACTCTGAGCACTATAGTGTGATATGCT TGACCTTGCATGTGGCCTTGTTTTTAACCTAGTTTTAAAGCGGTTCTTGTATCCCATATAGTAATTTGTAGCTTATGTGC TTTCTGGTTGATCTGTGATTCAATACCTAGGGTGTGTCTATATACCCTTCCTCCTCCAAGTCATATAGATATGCATTCTT TACATTTGATGGCTGTTGATAGTGTTTTAAATCGCGCTATAGTGGCGCTATCTCACTGTCACAACGAGGAGCAGCCCCTG GCCGCTACAGAACTTCCTGGCGGGGAGCATTTTGCAGTCGTGCCCGAATTCGCAACCATTGTGGCGCTGTAAATCTGCTA CAGGGAGGAAATCCTAAAAAGCCAAAATGCCCTCTGAGTATTAACATGAGGGATATAATATATATGGTTGTTTTTGGCTT TTCTGTTTGAAATAAGATTGAAAAAGACAAGTCTTCAAAGTCGACTCTCACTTAAATCTCCGTGCTTCCACTTCTGACAG TTGTGACTGCTTACATGTTCCACAGGAAATTTGTGCAGCCTGCAACTCCTTGGCTTTCGTAATTTGAATTTTGTGAAGTT CACTATGAGAAAATATTTGAAATCCTTGAGATAGCTCTCGGGTTGCTTAGTACTTTTTTCTTTTTTTGATTCCCAACCTA GTCAATGAACTCGGTTTGACCCATTACGATGCCCCACTTATTTCTCCTAATTTGGGCTTGGTTCAACTTTTTTCCTCCAA GAATTTCCCCTGCCTTTGAGTTGGAGCCCGAAATTTCACACTCACCTGAAACTTGTGTGTGAATTGTTCTGTAAAAGCTT GTCTCGTGTTGATAACGGCTCTAATAGCCAAGTGTGCCTATTTAGGTGGTATTGTGGCAATAGGCTTGTCGCCCCACTTG CTTCAGTTACTACGCTAGTAACCCATTTAGATTGTCCAACTGAGGGAACTAGAACACACAATGCCATTGCATTTGCTCAA AAACCAAACTTTGTGGGATATTATTGACCATGAGGTCACTTTTCATAATATCTTCCAACATCCTTTTTGGCCTCCCTCTA CCCCTCTTCGCAGCACTAAGAACCATGTTATCAACCCTTCTCACTGGTGCCTCTAAAAGTCTTCTTTGCACATTTCCAAA CCATATTAACCGATTTTTAGCCATCTTCTCCTCGATAGGTGCCACAGCAATATCTCCTCTTATACAATCATTTTGCATCA TGTCTTTTCTAGTGTGTCCGCCAATCCATCTTAACATTCAAATCTACATAGAGGATAGCTGGTCATATAGCTGTTAATAC TTTCCTTTGAGCTTGGTGGGTACTTAACAAACTTATACAGCTAGATAAAAATGAACCAGTTAGTTGACAACTTAATAATT TCCTGCAACATAATCCCAAAATAAAATATATGGAATCAAACAACACTGACAATATGTATATGAACAAGTATTAAGCAGAT AGGACCGGCTAGACTTGCCAGATTTATTGGTATTATTTGGCAAGCATTTTTGCAGTCGCAGGCTGAAATTTTATCTATGG ACTTATTAGTATTGTGCTACACTGCTACCTGATCTTAGTGACTTTCATTTACATCTTATCTGGCTTAAATGGATGTTGCA AAACATCTGTAAAAGCATGTACTTGGTGCTTTTTTCCCAAAAATCCAGTTAATCATCATCTTATGAATTATCTATTTTTG GCCATGCACCTTATTTTGTTTTGTTGTGTCTGGTATAAGATTCAGGAATCTGATGAAGCAAGAAAAAAGTTCTCAAATGC TAAATCTATTTCGTCATCCCAATTTTTTGGAGATCAGAGCAAGGCAGATGTTGAAGCTAAAGCTACTTTATCGAAGTTTT CTGTATGTATCCTACTGTCTTTTATTTTAGTAACTTGCTGGAACGTATAGTTAGAATACACCTTTAGATATTGGATGATC AATCCCCTGTTTTAATACTATATTGGATAACTTATTTCATAATTCATTGATATGATCTTTTGATTGTCGGAATGATCGTA TCAATAAATCACCCAAATTCATCTCTAAGAAATTTAGTTGTAGACATGTTAGTTCTGAAAATGGAAACCCCACCCTAGTC TCCTAGGAACCGCAAATATCAGATATAATAGTCTATGCACTGGACACGATAGTCTCTGCAAAAGACTAATATGATTTACA TTTGTGGTTCTATAAGGACTAGACCAGGGTTTTGCATTATCAAGCACTAATGTATCCATCACCAAATTTCTCGACAAATC TGGATATAAGTTAAGGGCCAGATGCATAAGTTTCTGTCAAAAGTTTATTTACTAATGAAGATTACATATGAATAATTTTG TTCTTTCAAAGTAGTCTTTTTTAACGAAGTTATGTAATTCTTGACATGTTTGTGTTCTCTCTGTCATAGATTTCTTTCCT TCTTACTAGCCATAGGGATCGCTGATTATTAATGTCCTTGGAGAACCTTTGTTTTGATAAACCAAAGACTGGCCGAAATT TATTTCTGAACACTTCTTCTGAAACATTCCCATTAACTTTAATGTTAAGATTACTTTTTGGTATAACCCATTTTGAAGTG ATATCTATAAATTAAAATTAATTTCTGGTACTTCTTTTATATGGTTTCATAATTAGCTAAACTAAGTTTATTTGTTACTG ATACAGATAGTAATTTATCAATTTAATACATTGAAATTAACCCAAATCGAGTCTTAGACCTTGCCTTTTCCTGTTAAAAA AAGAATTCTCTTAATTGTTATTTGAATTCATCATAGGCTAGTGTAGGTTGAGTGGGAAGAGAGAGAAAAAGAAGTTCCAG TTTTAATAGACTGATTTTGGGAAGAAAAAGAAAAGGTGAATGCATATAAACTGTGTCTACCTTTTGTTTGTTAAGCAACC CGTAAAAGTCTGAGAGAAGAAATACTATCTCTGTCATAGATGTTTTATCATGGACATTACAAACTTGTTCTATTCATGCA AATGTAAAATAGTGAAATATTTCACATAAATCTGCTGGCACACGTTGAGTAGTTCCTTGTGTGATTTACAGCATGTTTGC ATAATTATTCTACTCCTACATCAGGATATAATCATGGAATTGATTTAATTTTGAGAAGCTAGTCTTTGTAGATTTTAAAT ATTAGAATCGATTTTGACTCGGTAGACGAAAAACCAAGTTCAAATTGCAATTAACTGTTAGATAATGGAGGAAACCCTCA ATCACGTTTTAAAAGGATTATGTATCATAATTAGGTGTTTGGCAGCATCTTAGGTTAGATAGGTAGCTTTTTAGTTAGTT AATCTAATAGCTAAGATATTGGTTAGAGCGTGGTAAGGGTGAGGCATATAAAAGAAAAGGTAAGATTAGAGGGGGAGGTA TATAACAGAAAAAGGTAAGATTTCAGGGGGATATATGTTGTATTGTGTGGGGATTTTGGCAGAGGTCTGCATGTCTTTAA CATCGAGGGAATTTCATACTTTCTGTAGTTGTTACCTACTCATGGTGCTTGCCCACATTTGGGGCAGGATTGGATAAGGG ATTCAATAACTAGACTTTCATTTCTCAATTCTGTACCAGATCTATTACAACATCTATTTGGTGTAATGCCCTTTTAATAG CATGTCACTAATGGATATGTTGATGGATTGGGTATCTGTGGGAATCATTTCTCTTTTTTTTCTGGGATGTTTGAAATATA ATATAAAAGGATTCATATATCTTCACCAGACTGCTTAAGCTTTTGGGATAGTAGGTTTATAACATGGTATCAGTCTCTAT GACTAAGTCGTCTCAAGTTTAGTCCTTGTTATTTCCCATTATTCTAATAAAAAGTTCAATTTAAGCACAAGGTAGGTTGA TCTATGTATTGTGACGCTTCAAACGCAAATGGCTTTTACGTGATGGGAGTGTTAAAAATACAGTATAAAACCATTAATGT GTGATCTTGTAACAACACAAGCTTCTGGGGTAGTTGGTTTCTGGCATGATTATGTTCTATTTTTTTAGAAGGATGCCTTA TCCTCCCCCTCTTTAATTTTTTAATTTTTGGCTTAACTAAATGAAGAAAGAGGCGTGCTTTTGTATATTCTAGAATCTCG ATATGACTGGTTACCAAGCTTGAATAAACTCTTATTTGGAATTTAGTGTTTCTCGAATCTGGAATAGGAGAGGGGGTATA TGATGCTTGACGGTGTTTTGTCCACTTGTTATTTCCAGGGTTCGAATGCCATCTCCAGCGCTGATCTTTTTGGTGACTCT GGCGATAACTCCATTGATCTTTCTGCTAGCGACCTCATCAATCGATTATCTTTCCAGGTATTCCTTTAAACAACGAAATG ATAATGAACTCCTTGTATTAGTTCCTGTATTCATGTTGGAGGGGATGCTGTGGCTTCTTCCCTCCCTTGCTTGTTTTGCA GGCACAACAGGATATCTCTTCCCTTAAGAACATTGCAGGAGAGACTGGGAAGAAGCTCAGCTCATTGGCCTCTACCTTGA TGACTGATTTTGGAGACCGAATCCTCTGAAATTGTATCATGTTCTGTATGTAAAATGTCTTTAGTGTTTGCTAAAGATAC CAGCCGGTTATGTCTTGAGTTCAGTATACAATTCTTTTGAGATACAAAACACTATAATTTCCAGGCTTGTCATAGAGGCT GGTGTTTTTATTTTGTACCACAGGTACTGTTTTTAGGTTGCTAATATGTTTCAGATTGTTAATATTTTTTATTTATCAAT ACTAGTTTGTGGCGAACTTTGCTATTGTATCAGTTAAGAGAAAAACATTTTTAGATCAGTTTCCCTTTGATTACTGTATC AAATATTTATTTGCTAATGTTCGGTGCATACGGAGCTGCACCAAACCCAAATAAACTGGGAAGTAGTTGGGGTCTTACGG TACCAAACCTATTGCTACTACGTGGAACTGAACCATAGCCAGCCAGTGCTTTTGATTCGGTGGTTTCAAGTTCAAGACTC TGACAGGTTTTGATGTCAGAGAACTGAACCGTTTGATTTTATGAACCATACCAGTTAGCTTAGTATGAACTGATTTTTCA ATTTTATAATCTGGTTCTGATGTTGTGGGGTGGATAGTGTTTCACCTGTACCTATTTCTATTAATGAGTTCATGGGTATT TATAAAAAAAATTAGTACAATGTACTGAAAGTGTTAAAATATCCAAGACTATCTTTTAGTTATATTTTCTAAAAGAGAAG TGTTTCCCTACTTCCCCCTCCCTTACCCTCCCCTCCACTTCCCTTCAAAGCTGGGAGTTGAGTTTTGAAGGGAAGAGAAG AGAAAAGAGAGGCTTATGAGAACCCCCCTTGTTTGGGAGATTTTATGAAGGCGGGGAAGGGATTGAGGAATTTTTGAAAA CCCTCCAAGATCCCTCCAAGACACTCCTTTAGTTGTTTTGTTGAGTTCCCTCAAA 

CDS sequence (LotjaGi4g1v0171200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTCTGAAGGCTTCACCGACAAGAATGTTGTGTTCAAGAAACTCAAGACGAAGTCTGAAAATAAGATGTGTTTCGA TTGCAATGCGAAGAACTCAACCTGGGCGTCCGTCACTTATGGGATCTTCCTCTGCATCGATTGCTCCGCGGTTCATCGTG GTCTCGGCGTTCACATCAGCTTCGTGAGATCTACAAATTTAGACTCATGGAGTCCTGAGCAATTGAAAACAATGAGCTTT GGAGGAAACGGTCGTGCGCAGGTTTTCTTTAAGCAACATGGTTGGACTGACGGTGGCAAAATAGAAGCGAAGTATACATC CAGAGCTGCAGAATTGTATAGGCAAATTCTTTCAAAGGAAGTAGCTAAAAGTATGGCTGAGGAGGCAAGCTTGCTTTCAT CGCCTGTTGCTTCTCAGTCTGCCCAAGGGGTTAATGGACTTGCTGATGTTAAGACCAATGAATCACCGAAAGAAAACACT TTGGAGAAGCCAGAAAAGCCTGAGAGTACTTCTTCACCTAGAGCACACACAGCGGTATCAAATACTATGAAGAAGCCTAT TGGGGCTAAAAAAGCTGGGAAGAGTGGGGGGCTTGGTGCCCGTAAGCTCACTAAAAAGCCAAGTGAGTCTCTCTATGAGC AGAAACCTGAAGAACCACCTGCTCCGATCCCATCCACCACAAACAACAATTTATCTGCTGTGCCATCTCTGACGTCTCGA TTTGAGTATGTTGAAAATGTCCAGTCATCCGAGTTGAATTCTGGAGGTTCAAATGCAATAAGTCATGTTTCTGCACCAAA GGTATCAAGCTTCTTTTCAGACTTTGGAATGGATAGTGGCTTTCAGAAGAAATCTGGGCCAAGCTCTTCAAAAGTGCAAA TTCAGGAATCTGATGAAGCAAGAAAAAAGTTCTCAAATGCTAAATCTATTTCGTCATCCCAATTTTTTGGAGATCAGAGC AAGGCAGATGTTGAAGCTAAAGCTACTTTATCGAAGTTTTCTGGTTCGAATGCCATCTCCAGCGCTGATCTTTTTGGTGA CTCTGGCGATAACTCCATTGATCTTTCTGCTAGCGACCTCATCAATCGATTATCTTTCCAGGCACAACAGGATATCTCTT CCCTTAAGAACATTGCAGGAGAGACTGGGAAGAAGCTCAGCTCATTGGCCTCTACCTTGATGACTGATTTTGGAGACCGA ATCCTCTGA 

Protein sequence (LotjaGi4g1v0171200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASEGFTDKNVVFKKLKTKSENKMCFDCNAKNSTWASVTYGIFLCIDCSAVHRGLGVHISFVRSTNLDSWSPEQLKTMSF GGNGRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQILSKEVAKSMAEEASLLSSPVASQSAQGVNGLADVKTNESPKENT LEKPEKPESTSSPRAHTAVSNTMKKPIGAKKAGKSGGLGARKLTKKPSESLYEQKPEEPPAPIPSTTNNNLSAVPSLTSR FEYVENVQSSELNSGGSNAISHVSAPKVSSFFSDFGMDSGFQKKSGPSSSKVQIQESDEARKKFSNAKSISSSQFFGDQS KADVEAKATLSKFSGSNAISSADLFGDSGDNSIDLSASDLINRLSFQAQQDISSLKNIAGETGKKLSSLASTLMTDFGDR IL 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 2 142 141 2.7E-51
PANTHER 2 402 401 2.0E-218
PANTHER 2 402 401 2.0E-218
CDD 8 123 116 1.45638E-78
SMART 10 126 117 2.9E-43
ProSiteProfiles 10 128 119 24.997
SUPERFAMILY 12 125 114 1.27E-36
Pfam 12 100 89 6.7E-33
PRINTS 22 41 20 1.5E-22
PRINTS 41 58 18 1.5E-22
PRINTS 62 83 22 1.5E-22
MobiDBLite 133 234 102 -
MobiDBLite 133 154 22 -
MobiDBLite 155 170 16 -
MobiDBLite 281 300 20 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function GTPase activator activity Binds to and increases the activity of a GTPase, an enzyme that catalyzes the hydrolysis of GTP.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0171200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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