Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0171400 |
| Transcript ID | LotjaGi4g1v0171400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Basic helix-loop-helix transcription factor protein; TAIR: AT1G32640.1 Basic helix-loop-helix (bHLH) DNA-binding family protein; Swiss-Prot: sp|Q39204|MYC2_ARATH Transcription factor MYC2; TrEMBL-Plants: tr|A0A151QWJ5|A0A151QWJ5_CAJCA Transcription factor MYC2; Found in the gene: LotjaGi4g1v0171400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:33673697..33676624) extracted from Lotus japonicus Gifu genome v1.2.
CTAGTATTACCTCTTTCTTCGTCAAAGCCTAAAATGCAACCCAAATGAACTCCAAATAAAAATTCGAAACACAAATGCAA CCCACTCATTAACCTTATCTATCACTCTCTCTCTTCTCCCTCTTTCTCTAAACAGCATCTCCATTTCCAACTTCCACTCC TTCCTCCGCCGCCAAACACTTCACTTCTTCCCCTGATCAGCCCATGGAATGACAGAGTACCCTTTGCCACCCTCCATGAA TCTCTGGTCTGACGACAACTCCTCCGTCATGGAGGCCTTTATGAGCTCCTCCTCCGACCTCTCCTCTCTCTGGCCACACC CCGCCGTCTCCGCCACCGCCACCGCTCCAGGACCCGATGCTCAACCGATGCTCAACCCGGAAACCCTCCAGCAGCGTCTT CTGGCGCTGATCGAGGGCGCCAAGGAGAGCTGGACGTACGCTATCTTCTGGCAGCCGTCGTACGACTACTCCTCCGGTGC CCCTCTTCTTGGATGGGGTGACGGTTACTACAAGGGAGAGGAGGACAAAGATAAGGCGAAATCCACCAAAACGGCGTCGT CCTCCTCCGCCGAACAGGACCACCGCAAGAAGGTCCTCCGTGAACTCAATTCGTTAATCTCCGGCAACACCGCCTCCCCC GACGTCGCCGTTGACGAAGAGGTCACCGACACTGAGTGGTTCTTCCTTGTGTCGATGACGCAGTCTTTCGTCAACGGCAG CGGCCTCCCTGGTCAGGCGTACTTCAATTCCAACGCCGTCTGGGTTTCCGGCTCCGACCGACTCTCCGGTTCTGCCTGTG AGCGGGCCCGCCAGGGCCACCTCTTCGGGCTCCGGACTATGGTTTGCATACCGACACCGTGTGCCAACGGCGTCGTAGAG CTTGCATCCACGGAGGTGATTCCTCACAGCCCTGATCTGATGAACAAGGTGCGGATTCTGTTCAACTTCAACAATAACAA CCTCCACAGTAACAACCTCGATGCGGCGGGTTCGTGGCCGGTAAATTCTGTTACGGCGGGGCACGGCGAGAACGACTCTT CTTCTCTCTGGCTCAACGATCCATCCTCTAGCGGGATTGAAATCAGGGATTCCGTTACGGTTGCGCCCGCGGCGGCGAAT AACAACGCAACCGTAACAATTGGCAAGAGCTTGCAGTTCCAAAATTCTTCCAGTGCCCTAACGGAAACCCCAAGTTCCGT TCATGTTCACACTCCGAATGGATTTTTGCCGAGGGAGCTTAACTTTTCTAGTTCAATGAAGCCGGAATCTGGCGAGATTC TGAGCTTCGGGGAGAGCAAGAAGAACTCTTGTACTGGTAATGGCAATTTCTTTTCCGGACAGTCGCAATCGGGCGCGGTC GCCGGAGCAGAGAACAAGAGGAGGTCTCCTGGTGCCAGGAGCAGCGTTGACAATGGAATGCTCTCATTCACTTCCGGTGC GATTTTACCGGACTCGAATGTGAAATCTGGTGTTAGCCGTGGCGGTTGTGGTGGTGGTGATTCGGATCATTCAGATATTG AAGCTTCTGTTGTAAAGGAGGCTGACAGTAGTAGACTGGTGGAACCGGAGAAGAAGCCGCGGAAAAGAGGGCGGAAGCCA GCGAATGGCAGAGAGGAGCCGCTGAACCACGTTGAAGCGGAGAGGCAGAGGAGGGAGAAGCTGAACCAGAGGTTCTATGC TCTTCGCGCTGTGGTTCCTAATGTATCGAAGATGGACAAGGCGTCGCTTCTTGGCGATGCCATAGCTTTCATTGAGGAGC TGAATGCGAAGGTTAAAGGGGCAGAATCAGAGAAAGCTGAATTGGAGAAGCAATTGGAATCAGCTAAGAAGGAGCTCGAG GCGGTGAGTAAGAATCCGCCTCCGCCTGATAAAGAGGCCGATTCAAATTCGACGTCCTGCAAGCTGATTGATTTGGTCAT AGACGTGAAGATCATGGGTTGGGATGCGATGATTAGGATCGAATGCAAGAAGAAGAACCACCCGGCCGTGAGGCTGATGG CAGCATTGAAGGAGCTGGACCTGGACTTGCAGCATGCCAGTGTGACGGTTGTGAACGATTTGATGATCCAACAGGCGACG GTGAACATGGGAAGCCGGTTTTACACACAGGAGGAGCTGTTGTTAGCGCTCTCCTCCAAAGTTGGGGATCCACGGTAGAT ACAGACATTGCTCTACATGCTGCATTGGGATGGAATCACATACATGGTGTAGGTCTCTGGGGAATTTTATGGCTTCCCGG TAGCTATTCTGTACAATTCAATAGTCTTTTTTGGTAGCTAGCTTAGTTTAAGTTCTTGATATGGGAAGCTGAAGAGATGA ATGAGAGGTTGCTGCGAGGAAAGATAGGTAGCAGCTCTCTGATGATGTCGAAATCAATGGACTATTTTTGTGTTAATATT ATCTATCGAGGTTGTATATATGTTTATGATCAATTATCATAAATGTGAACTGAACTTCACTGAACTTTCATGAAGATTTC TGGGTATTTGTTATAATTTTTAGGCATATGAATAGGTGATTCACCCATTGAATTATGTTCTGCTACTAAGCTCTATGAGG TCATGTCAATTGTTTGTGTTTTTGTTCGTTTGAGGCAACTGATTTTGTGTAGATATATTTTATTCATCAATTATAGTTAA GTTTGTATCTGTTCATCATGTTCTTTATGAGTTTTGGGTTATCTGATCTTATCATGAGTAGAGTTTGGTCTTTGCCTTAT GAGGTAGAATCAGGACAAAACAATATGCAAGGAAAACGTGTTGGGTAGCAGTGTGATTTGATATCTTGTCTTTCCTATGA TCCCAGAACCTTTTAGCAGTGGGTGGTTGATATTTAATCCATGTGAAAAATGCATCCTCACACGAATTTATCTTAATCTC TACTTTGTGCTGGTGGTTTATTCTATTCCAGGCGTCTACATCGTTGCT
CDS sequence (LotjaGi4g1v0171400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAGTACCCTTTGCCACCCTCCATGAATCTCTGGTCTGACGACAACTCCTCCGTCATGGAGGCCTTTATGAGCTC CTCCTCCGACCTCTCCTCTCTCTGGCCACACCCCGCCGTCTCCGCCACCGCCACCGCTCCAGGACCCGATGCTCAACCGA TGCTCAACCCGGAAACCCTCCAGCAGCGTCTTCTGGCGCTGATCGAGGGCGCCAAGGAGAGCTGGACGTACGCTATCTTC TGGCAGCCGTCGTACGACTACTCCTCCGGTGCCCCTCTTCTTGGATGGGGTGACGGTTACTACAAGGGAGAGGAGGACAA AGATAAGGCGAAATCCACCAAAACGGCGTCGTCCTCCTCCGCCGAACAGGACCACCGCAAGAAGGTCCTCCGTGAACTCA ATTCGTTAATCTCCGGCAACACCGCCTCCCCCGACGTCGCCGTTGACGAAGAGGTCACCGACACTGAGTGGTTCTTCCTT GTGTCGATGACGCAGTCTTTCGTCAACGGCAGCGGCCTCCCTGGTCAGGCGTACTTCAATTCCAACGCCGTCTGGGTTTC CGGCTCCGACCGACTCTCCGGTTCTGCCTGTGAGCGGGCCCGCCAGGGCCACCTCTTCGGGCTCCGGACTATGGTTTGCA TACCGACACCGTGTGCCAACGGCGTCGTAGAGCTTGCATCCACGGAGGTGATTCCTCACAGCCCTGATCTGATGAACAAG GTGCGGATTCTGTTCAACTTCAACAATAACAACCTCCACAGTAACAACCTCGATGCGGCGGGTTCGTGGCCGGTAAATTC TGTTACGGCGGGGCACGGCGAGAACGACTCTTCTTCTCTCTGGCTCAACGATCCATCCTCTAGCGGGATTGAAATCAGGG ATTCCGTTACGGTTGCGCCCGCGGCGGCGAATAACAACGCAACCGTAACAATTGGCAAGAGCTTGCAGTTCCAAAATTCT TCCAGTGCCCTAACGGAAACCCCAAGTTCCGTTCATGTTCACACTCCGAATGGATTTTTGCCGAGGGAGCTTAACTTTTC TAGTTCAATGAAGCCGGAATCTGGCGAGATTCTGAGCTTCGGGGAGAGCAAGAAGAACTCTTGTACTGGTAATGGCAATT TCTTTTCCGGACAGTCGCAATCGGGCGCGGTCGCCGGAGCAGAGAACAAGAGGAGGTCTCCTGGTGCCAGGAGCAGCGTT GACAATGGAATGCTCTCATTCACTTCCGGTGCGATTTTACCGGACTCGAATGTGAAATCTGGTGTTAGCCGTGGCGGTTG TGGTGGTGGTGATTCGGATCATTCAGATATTGAAGCTTCTGTTGTAAAGGAGGCTGACAGTAGTAGACTGGTGGAACCGG AGAAGAAGCCGCGGAAAAGAGGGCGGAAGCCAGCGAATGGCAGAGAGGAGCCGCTGAACCACGTTGAAGCGGAGAGGCAG AGGAGGGAGAAGCTGAACCAGAGGTTCTATGCTCTTCGCGCTGTGGTTCCTAATGTATCGAAGATGGACAAGGCGTCGCT TCTTGGCGATGCCATAGCTTTCATTGAGGAGCTGAATGCGAAGGTTAAAGGGGCAGAATCAGAGAAAGCTGAATTGGAGA AGCAATTGGAATCAGCTAAGAAGGAGCTCGAGGCGGTGAGTAAGAATCCGCCTCCGCCTGATAAAGAGGCCGATTCAAAT TCGACGTCCTGCAAGCTGATTGATTTGGTCATAGACGTGAAGATCATGGGTTGGGATGCGATGATTAGGATCGAATGCAA GAAGAAGAACCACCCGGCCGTGAGGCTGATGGCAGCATTGAAGGAGCTGGACCTGGACTTGCAGCATGCCAGTGTGACGG TTGTGAACGATTTGATGATCCAACAGGCGACGGTGAACATGGGAAGCCGGTTTTACACACAGGAGGAGCTGTTGTTAGCG CTCTCCTCCAAAGTTGGGGATCCACGGTAG
Protein sequence (LotjaGi4g1v0171400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEYPLPPSMNLWSDDNSSVMEAFMSSSSDLSSLWPHPAVSATATAPGPDAQPMLNPETLQQRLLALIEGAKESWTYAIF WQPSYDYSSGAPLLGWGDGYYKGEEDKDKAKSTKTASSSSAEQDHRKKVLRELNSLISGNTASPDVAVDEEVTDTEWFFL VSMTQSFVNGSGLPGQAYFNSNAVWVSGSDRLSGSACERARQGHLFGLRTMVCIPTPCANGVVELASTEVIPHSPDLMNK VRILFNFNNNNLHSNNLDAAGSWPVNSVTAGHGENDSSSLWLNDPSSSGIEIRDSVTVAPAAANNNATVTIGKSLQFQNS SSALTETPSSVHVHTPNGFLPRELNFSSSMKPESGEILSFGESKKNSCTGNGNFFSGQSQSGAVAGAENKRRSPGARSSV DNGMLSFTSGAILPDSNVKSGVSRGGCGGGDSDHSDIEASVVKEADSSRLVEPEKKPRKRGRKPANGREEPLNHVEAERQ RREKLNQRFYALRAVVPNVSKMDKASLLGDAIAFIEELNAKVKGAESEKAELEKQLESAKKELEAVSKNPPPPDKEADSN STSCKLIDLVIDVKIMGWDAMIRIECKKKNHPAVRLMAALKELDLDLQHASVTVVNDLMIQQATVNMGSRFYTQEELLLA LSSKVGDPR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 15 | 645 | 631 | 6.0E-205 | – | |
| PANTHER | 15 | 645 | 631 | 6.0E-205 | – | |
| Pfam | 60 | 245 | 186 | 4.2E-50 | ||
| MobiDBLite | 105 | 125 | 21 | - | – | |
| MobiDBLite | 371 | 479 | 109 | - | – | |
| MobiDBLite | 371 | 386 | 16 | - | – | |
| MobiDBLite | 399 | 416 | 18 | - | – | |
| MobiDBLite | 436 | 479 | 44 | - | – | |
| Gene3D | 468 | 548 | 81 | 4.1E-16 | ||
| ProSiteProfiles | 469 | 518 | 50 | 16.412 | ||
| CDD | 472 | 523 | 52 | 8.98498E-14 | ||
| SUPERFAMILY | 472 | 538 | 67 | 3.79E-16 | ||
| Pfam | 473 | 518 | 46 | 2.1E-9 | ||
| SMART | 475 | 524 | 50 | 2.2E-14 | ||
| Coils | 515 | 549 | 35 | - | – | |
| MobiDBLite | 541 | 561 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi4g1v0171400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…