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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0173700 |
| Transcript ID | LotjaGi4g1v0173700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homogentisate phytyltransferase; TAIR: AT2G18950.1 homogentisate phytyltransferase 1; Swiss-Prot: sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase; TrEMBL-Plants: tr|A0A151RIZ9|A0A151RIZ9_CAJCA Bacteriochlorophyll synthase 33 kDa chain; Found in the gene: LotjaGi4g1v0173700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:34833014..34839364) extracted from Lotus japonicus Gifu genome v1.2.
ATTATGATGATTGATTGAATACAATTGAACAATCCAGTTTTATCATCATCATCTTCTTCTTCTCTGAAGCTCTCTGAAGC TCTCAGGAGTTTTCAATTCTTTGACACCTATAACCCAGACCTTTCCAGCATTGCTCCTGTTCTTCCACTCTTTCTTCTGC ATCCCCAAAGGTGTGTTGAGAATTGCAAAGGGGATTATGCGGACTTTCTTATGGGGTAGATCCGAGTCAGAGACCAGGAT TGCATGAGTTATGTAGGATCATGTCTGCAGACCCCGTGAGGCGGGTGGACTAAGGGTGAAGAACTGGGATCTATTCAATG TGGCTTTGTTGGGCAAGTGGGGATGGAAGCTTATGGCGGGGAACAATAATTTCTGCAGCAGAGTGATATGGGCATGGTAC GGTAATAAAATCGAGGAAGGGGTTATGAATGTTGCGGCTCGTGACCAAACTTCATTTTTGAAATGAAAATTTCCTAATTA AAATTCATTACTCGAACCAAAATTAAGCTAATAGATAAAGATGAATGATTGTTTCTAACAAAGACGCACATGAGAATTTT GATAATGTATATCTTGACGGTAATGTTAGTATTTTGAAAAATTTCAGGTACCCTTATTAAGATGGAAGCGAGATCCGGTG CTTAGTTTAATGTGCGTTATTTCTTCTTGGATAGCCTTATTCCCAATCGGACCTTTCTTTCACATACAGGTTTTGTCCTA AAGCTAGTTGTGATTTCCAAATAATTTATTTCTCTACAAGCATGTGTAAGTTTTTATGCACGTTAATAATAAAGAATATT GATATCATGTTTTAAGAGTTAGTTTTGTTGGATTTATATATGATCAACTTGAAACCACCAATCATATTAGAATGAGTAAC ACTACTGTCATATTTTTTCTTTTTTTCTTTTGGAAAATATATATAGAAATCTAACTATACCAACGATAACTATTACACCC GAATAACATAGAACACATAACTAACTAATTTTCTATAAATCACATAGTAAATTTAAGCCACAAGCGGTTGAGAGCATCCA TTGTATTATTAGTATTAGTATATTTATTTAAGCCACTTTTGTACTCTTTGGGTTGAGATAACCCTAGTATCTCTATCAAT ATACATATTTGCTTATCAAAAAAAATTATATATATATTTATCCAGATAGGCTATAGCACTAGAAATTTACTTTCCTATGA CATCCCTTTGATGATATTGATTAAGGTAAGAGAGACGAAAAGAAAAAATAAAATGAGCTATTGAACTTTTTCACAATAGT AGTGTTGGTATATATGTATTTTATTAGTGCATCATAACTTTTCATTTAACCAATTTATCTTCATGAGGAAGCCAAATATT TTTTTATTTCTAATTTGTGTACCAATATCCAGACTTTGGTGTTTAAAAGGGCAGCTACTTTTTCGAGATCAATGATGTTC GTCATTGTATTCATGAGCTTGTACTCTGTAGGTATTGGGTTGTTCAAGGTAAATTAAGGCCAAAAATTTCTCATAGCATA TATTTGTTTTCAATATCATGATTTTGGTTCAATATTCTACCTAATGTAATCATTTTACTCGTTTTATACAGGATATAGGT GACATCGAAGGAGATAAAGCATATGGTATCTATTCTTTTGCAGCACGTCTTGGTCCAAAACAGGTGTGTCCTCCAGGATA TGCATCATGAAGAAAAATTAGTTGTGCCCTTCTATGTATCCATAATCCATGTGTTGTTCCAGTGTTCCTAACTAATATTT TTCAGGTATTTTGGATTTGTGTTTCCTTTTGTGAAATGGCTTTTGGAGTTGGCCTTTTGATTGGAGCAACCTCCCCTTCC CTTTGGAGTAAAATTGTCTCGGTAAGCTGCAATTAAATCCTTCTTCTACTTAAGGAATAATACTACATAAAGTAGTAGAA CAAAACTAAAGACTAACCAACATTATAACCCTGTTGGCCAAACTTATCCCAATTCATATACACCTGAAAGATCCTTTCAA CTTCAAGTAAAAGACAGATTCTGAGAATTCCTCAAACATACAAATTTCAACACATCATAATAAGAGACTCCTTTAATTCT CGTAGGGAGGGAAATCAAACAAACACTCTGTTCTGGGAACTTGGGAAATACCTAGGTCCGACCCCACACTCTCACAAAGG ACAACGGTGGGACCCGGGACCTAGGAGTTAATTTCCCTCAACCACCCTAGAAAGCTAGGGACTGAACCTACCACACGGGG AATCCTGGACCGTGAGATCTCACTAGCGTCGCAGGAATGACAAGAGGATCGAACGACTGGGAGCCACCCGCATACAGGGC ATGCATGACTGTTCAGAGAACCCTAGTAACTCCTCCGCGAAAACGCCGCCCTTAAAGCTCATGCTCCACTGTGGCAGTGG ACCAGAGCTGGGGGAATACACTGTTCTGGGAGACGCTCCAGCCGATCACCCCCCGGGTCGATCACACTGTCTCCTCACCC GATCAAGACTAAGGACGATCAACCCTGATCGACCAAGCGATCCCACTATTTCCACTCCATACCGCACGAGCGATCAGCTC AAGCTCCACTGTTCTGGGAGCCTCCAAAACCGGCCGTCCCCCAAGGACGATCGGCCTAATCTCGTAGCTCAAGCTCCACA ACGGCACCGCCCTAAAACGGGATCGAATCTAAAGGAAGTCGTCTTCTAACTCTACGCTCCTTATTCCTATGACCTGGTCT AGACCAGAAGGAAGGGGAGGGGAGGAGCGCGCGAACCGTGCAACCGTCCACCCATAGACCCACATCACAAGCTGCAGGGA GATCAGGTGGGAAGATCACCCTTAAGCTCATGCCCCACTGAATCATTGGGCCAGAGCTGGGGGACTACTGTTCTGGGAAC TTGGGAAATACCTAGGTCCGACCCCACACTCTCACAAAGGACAACGGTGGGACCCAGGACCTAGGAGTTAATTTCCCTCA ACCACCCTAGAAAGCTAGGGACTGAACCTACCACACGGGGAATCCTGGACCGTGAGATCTCACTAGCGTCGCAGGAATGA CAAGAGGATCGAACGACTGGGAGCCACCCGCATACAGGGCATGCATGACTGTTCAGAGAACCCTAGTAACTCCTCCGCGA AAACGCCGCCCTTAAAGCTCATGCTCCACTGTGGCAGTGGACCAGAGCTGGGGGACTACTGTTCTGGGAAACCATGGCAC GGACGACCAAAGCAGGCCCAGGGCGGAAACCTAACGAAACGGCCACCACCGCCCGCGGACGACCACCGCTCCAGGAAACC CTTGAACGGACGACCGGAGTGGACCTAATGGGACGATCACCCACCAAACGATCGCTACCTCCTTCCGACCCGCTTGGGAT GGAGGGGACTTCCCTTTTGAGTACAAGACAATCACCGGGCCCACCATGTAGGGGTTGACCTATCCCAACCACCCTACGAT ACTAGTGGTTGGAGGCACAGATCCCAAGGAACCCTGGACCATTGGATCACTGCTTTGCGGCAGGGAGCAACAGAGGATCC AACAGCCCAGGATGAACCAAGTACGAGCCAAGGCATGACGTTGCATGGCTCCAACCCTAATTTTCCTTCGTGTATATAAG GGGAGCTCCTCCTTCATATTAAGGTAACTCATTTCTTCACCTCTTCACTCACTCACTCTCATTCCCCTACTTACTTTGGC ATTGGAGTCTCTTGCAGGAGCCCCACCCGGGACCTTCTCCGACCGTCCCAGCTTCGCCGCGCCCCTCACCTTCTACCTAC CCCCGGCTTCTTGGGTAGTTTGATCGCTTCCCGATCACACTCCTGACATAGTTTTCGTCCCAAGTCCTGCAACAGTTTTC CACCATGTTTAAATCGCATCAGTACCACGAAAGAATTTTCCACCTGGTTGGGCGCTTCTCAATTCGGAAGCAGAATAAAC ATCATAGAATATTGCAATAAATCCAAATTACAATGGACTTGTCACACCCTTCTTTAGCTAAATATTGAACAATACTATTT CTTTCCCTTTATATATGGCAGATATCAATACAACTTGTTTGCTTCTGAAAGAATGTGATGCAAATTTCTATTTAACACTA GATAATTCTAGGAAGCTATTACCAAGATGAGTCTTGAAACATGCATCTAAAATCAACTAATAATTAAAAAATAAACTACC GACATAATCAATCGATCCTAGGAAGCCAATAAATTGGCAATTATATTGAATCAAGCTGCAGCAAGTTCAAGCTTGCTAGC TTCTATACAATCATATCTATTTATTTTCCATTCCAACAGTTCCCTTAACAAATCAATCTTCTTCAGAGTGTTTTCCCACT TCCAGGGCCTATTCTTTTTATTCTTGGCGGTGGAATCCATTCACTTATGCAGACACTGGTAGTTTTTGTGGAGACGCATG AGTCTAAATTGTGTAGCGGAAAAAGGACAGTTGCATCAACCTTGTTTAAGTAATGATGATAGTCTTAATCTATGAACATG CCAGATATTTTCATCCTCAAATTTTTGTTTGCATGAAAATGAGTTCATTTCTCCCCAAACAGACTGACCAAATCAAGGAG TAAGGGACTAGGCTCCATATATATAAACAGATCTGAACCTCTTCTGCTACCCTAAAATATGTAACAAACCTTGCAATGAA CCCGGGAAGATCGCATAACAGCAGAAGATGACAAGAAGCTAGATTCGGTTCCTTCACCACAAAGAGAGCAGGCCATCCAC ATAAACATCGAGACCTTTGGAGGAATGATTTTTGCCATCCTTCTGAACCAAACACTTGCTTCTCCACAACAAGCAAACAA GTTTTTACAGTGAAAAACCCCATCCGATATTCAACACTCCACTGGAAGGTGTCATCAGAATTAGTACTCATGATTGTATT CATCATATTGCTTGCTAGGATGAAAATTCTAGGAAAACATTCTCACTTCTTATCATCTAAAAACAGAACTCTATCCCCTG TTCTGACACTGCATATGAGTATCTTATTGAACACATTTGAATACATTATCCTCCAGAGAAAGGTTAACAATTTCATGCTT ATATTTTGCACAAATAATTCTTCTTTGTCCCAAACCTCCTAATCCACTTTAATCGGAGAGTTTATTTTCCAATGGCTCCC TCCCTTCTACCCTAAAGAAAAACCCTCATTATTTTGTCAAGTTTGTACATGATCTCCACCGGATATTTGAATACTAACAT GATGTATAAGGGGATAGTTCTTAATTCAAATTTTAAGGCATCTAAGAAGATGTATCCACCATAGCAGATTTAGCATAAAG TTTACTAGAGTCCATTATACTCTTTCCTTTTTTAATATTATTAGTACCTTCTAATATGACATCTATCTATGCTTTAATAA ATAAATATTTCCCTAAGAAAGTTCTATTTGTTGAATAGATTATTCTGGCTTTAATTAAAATCTTGATAATAGTTTCAAAT GAATAAGCTTAGGTCTATTCTGGCTTTAAACTTAATTTCTTGCAATGTTTGAAATCTATTTGGTGCTTATGTGTTAGTGT TTGGGACATGCTGTTCTGGCTTCAATTTTCTGGTACAATGCCAAATCAGTAGATTTGAGTAGCAAAGCTTCCATAACATC CTTCTATATGTTCATCTGGAAGGTAATCATCAACTTAAAGACTGTTTACCTATTATTTAGTTCAATATAATGTTAATTAT TTTAAACAAATGGGTATGTAATTAATTTTCCCTTGTTATGAGAAATTTGACTTCTAATGATTTCTAAATTTCTATAGAAA TAAAAAACGAGGGTAAATTAGCAATAGTGAATACATATTTCAAACTTAGTTGATGAACTTAATCATATATTGGTTTAATT TTATCTTCTGGTGAAAATTAAACACTGTTCAAAACATGGAACATACCGAGATAAGAATTAGTGCCAATATATCTGTGTAT TTATTTTCAAAGTATTTTCGTTGAAGTCTTTGTATGTTCTAGTATAAAGTGCAACATGATCTTATATTTATGCTTTGTTT CTTTTGCAAGATATTATCTGCAGAGTACCTCCTCATGCCTTTAGTGCTTAGATGAAGATGCAGCAGCACAGTTGACTTGT GAGAATGAGTGTTGTTTTAAGTGGTGTCTTTGTGCCAATTTATGTGTGATTTGTAATCAATATACTTTTTAAGAGTTAAG GCCTTCATGAACTTTGAAAAAGTGGTAGACTGCATGGAAAATAACACTACATGTGTTTATTTTACGGTTGCAAAAAAAGT AAAAGTGCATTTCCTGTGGTAAATTGTAATTTCTGTGAATGTACAATGAGGACAAGTGTATGTGTGTCTGAAAAGTATCT TAATGTAATTTTTTTGTCTTCTACAAGCTAA
CDS sequence (LotjaGi4g1v0173700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCATGGTACCCTTATTAAGATGGAAGCGAGATCCGGTGCTTAGTTTAATGTGCGTTATTTCTTCTTGGATAGCCTT ATTCCCAATCGGACCTTTCTTTCACATACAGACTTTGGTGTTTAAAAGGGCAGCTACTTTTTCGAGATCAATGATGTTCG TCATTGTATTCATGAGCTTGTACTCTGTAGGTATTGGGTTGTTCAAGGATATAGGTGACATCGAAGGAGATAAAGCATAT GGTATCTATTCTTTTGCAGCACGTCTTGGTCCAAAACAGGTATTTTGGATTTGTGTTTCCTTTTGTGAAATGGCTTTTGG AGTTGGCCTTTTGATTGGAGCAACCTCCCCTTCCCTTTGGAGTAAAATTGTCTCGTGTTTGGGACATGCTGTTCTGGCTT CAATTTTCTGGTACAATGCCAAATCAGTAGATTTGAGTAGCAAAGCTTCCATAACATCCTTCTATATGTTCATCTGGAAG ATATTATCTGCAGAGTACCTCCTCATGCCTTTAGTGCTTAGATGA
Protein sequence (LotjaGi4g1v0173700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGMVPLLRWKRDPVLSLMCVISSWIALFPIGPFFHIQTLVFKRAATFSRSMMFVIVFMSLYSVGIGLFKDIGDIEGDKAY GIYSFAARLGPKQVFWICVSFCEMAFGVGLLIGATSPSLWSKIVSCLGHAVLASIFWYNAKSVDLSSKASITSFYMFIWK ILSAEYLLMPLVLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 13 | 13 | - | – | |
| PANTHER | 4 | 172 | 169 | 6.6E-74 | – | |
| PANTHER | 4 | 172 | 169 | 6.6E-74 | – | |
| Pfam | 7 | 161 | 155 | 8.4E-17 | ||
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 14 | 34 | 21 | - | – | |
| Phobius | 35 | 45 | 11 | - | – | |
| Phobius | 46 | 68 | 23 | - | – | |
| TMHMM | 50 | 72 | 23 | - | – | |
| Gene3D | 50 | 172 | 123 | 5.3E-6 | – | |
| Phobius | 69 | 93 | 25 | - | – | |
| TMHMM | 93 | 115 | 23 | - | – | |
| Phobius | 94 | 112 | 19 | - | – | |
| Phobius | 113 | 118 | 6 | - | – | |
| Phobius | 119 | 140 | 22 | - | – | |
| TMHMM | 119 | 138 | 20 | - | – | |
| Phobius | 141 | 151 | 11 | - | – | |
| TMHMM | 151 | 173 | 23 | - | – | |
| Phobius | 152 | 173 | 22 | - | – | |
| Phobius | 174 | 174 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Transferase activity, transferring alkyl or aryl (other than methyl) groups | Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi4g1v0173700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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