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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0189800 |
| Transcript ID | LotjaGi4g1v0189800.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribose-phosphate pyrophosphokinase; TAIR: AT1G32380.1 phosphoribosyl pyrophosphate (PRPP) synthase 2; Swiss-Prot: sp|Q9XG98|KPRS1_SPIOL Ribose-phosphate pyrophosphokinase 1; TrEMBL-Plants: tr|I3T7C1|I3T7C1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0189800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:43489505..43492115) extracted from Lotus japonicus Gifu genome v1.2.
AATATACATCTTGGTTTGTTTAATTCAGAAACTGATTGGCTTCAGTGTTGTCAAATAGCGGATGTCGCGGTGCTATAGCG TAGCGCTCTGAGGGCTCACTGCTATCCGCTATTTGCCGCTTTGAGGGCTTGCCATTGCGGTTTTTTGGCTTTCCGCTATT TTCCGCAATCTGCAATTAACAACATTCAGACCTTTTGTTCCCCTGCCACATTGCATATTTGTTATGAACTTATGATTCAT CTTCCATTTGGGCAGGTTTCTGCTGTTTTTTTTTCTAACTCCATGTTGCTTCAACTGTAGGAAATTGCTCGGTACATGGG CTTGGAACTTGGGAAGATTTCCATAAAGCGATTTGCAGATGGTGAAATCTATGTCCAGTTACAAGAGAGTGTTAGAGGTT GCAATGTATACCTTATACAGCCAACAAGCCCTCCTGCAAATGAGAATCTCATGGAGCTTCAAGTAATGATTGATGCTTGT AGGAGAGCATCAGCCAAGAATATCACTGCTGTGATTCCATACTTTGGATACGCCAGAGCAGATAGAAAGGCAAGTATTTT GCATTTTACTGATTTACAGCTAACTGGTGTAATCTTTTATAATGCTTGGGTTTATATGGTTCTACACATCCACACACAAT GGCAGGCAGGATTCTCCCACTCATCGGTTTCCCGCTTTATAATACTTTTGTTCTTTGTTCTGAGTGATTTATGTTGAATT CCCCTCCACCTGGCCTCCTGCCATCTGTCATGTTTGTAAACATTTACTAGAGCTTTTTTTTTATCTTCCTTTACAGACTC AAGGACGTGAATCAATTGCCGCTAAACTTGTTGCAAACCTTATTACCAAAGCTGGGGCAGACCGTGTTCTTGCTTGTGAC CTTCATTCAGGGCAGGCCATGGGTTACTTTGATATTCCTGTGGATCATGTACGATGCCAAGTAAGTAAGAAATCTCTGAA TGATTGTAGTTTATTTTTTCACACCGTGTTTACTAAGACTTTTGTTTATGATGTCCTCCAGCCTGTGATCCTTGATTATC TTGCTAGCAAGACAATTAGTTCAAATGATTTGGTGGTTGTTTCCCCTGACGTTGGTGGTGTTGCAAGAGCTCGTGCTTTT GCAAAGAAATTATCTGATGCACCTTTAGCTATTGTAGACAAAAGGCGCCACGGGCACAATGTAGCTGAGGTAATAACCGC AACAAAAATCCATGCATTGTACGTTGCATTTCTTCTGGAGTTCCCATTTATGAAGGATTTACCTTCTAAAAGGATCATCA TTATACTCATATAGTATGCTTGTCAATGGTTATATATTTGAGTGCAGTGAATTATTTTGGTCATGGGGCAATCTGAGTTG CATTTGTATTTTCCGGGGATGAGGAGGCCTTTTTTATCGTTATTTTTGGATGTCGGCATGGTTTAGCATGTCTTAGTATT ATAAGATACTAGTTCTCCTCGGGGATTAATTGAAGTTAACCAAATTGATGTTTCAGCTATATTTATCTGCTTATGTTTCC CCTGCAGGTGATGAACCTGATTGGTGATGTAAAAGGAAAAGTTGCAGTAATGGTGGATGATATGATTGACACTGCTGGTA TGCCATCTTCAGTGTCCAATTTAACATTTGAAAAGAAGGATTTCTTTCCTGTGATTTTTTGTTGCATTTAGTGGTTACTT GTTGAGTCAAAAAAATATGACTAAGCAAACTAATACTCTTATTGTCTTTATAAACTTAAGCTATCATACGAAGTTTGATG GACATTTTAGATCTCCTCTTAAAATCATTTTCTCTATATTGTTGCTCTGCTACTCTACCTTTCAAATGTCTTACAGCATA TTTTGGTGTTCCTAATTTTTCAAGTATTTGTACAGAATTTACTTAAAAATGTGTTCTTTCAGAAAACTGTTGAAGGTAAC TTTAGGATTAATCATTAAATTATAAACATCATCAAAGTGGAGCTTTTGCTCGTTCTTGGTAATGTGTAAAATTAGTTTGG TTAACTTAATATATTCCTGAAAATGTCAGATAATGTCTCCCACATACATGGGAAAGTTGGGATTCCCACACTCCCCTTGA GAATGTTTTGCCAAGAATGTTGATCAAAAGTCAAAACATGTTCAAAACAGAATTCCGGAAATGTATGTCTCAGGGGAATA TTGTTTTTTGAAAATAAATTTTCTTATTCTAATTCTTATGGACCTTAGGAACCATTGCAAAGGGTGCCGCACTATTACAT GAAGAGGGAGCCAGGGAAGTTTATGCATGCTGCACTCATGGTGTTTTTAGGTATTATTGCCATCTGTTCTACTTTTAGTT TTGATTCTTGTTCTTTTATTATTCTAATCCATTGTAAATGTTGCCTGAGGCATTTACATTCTGCATTATACATGAACAAG TATTCATATTATGCTTTTGTATAATTACAGCCCTCCTGCAATTGAAAGGTTGTCCAGTGGCTTATTTCAAGAGGTGATTA TTACAAACACCATTCCAGTTCCAGAGAAGAACTATTTCCCGCAGTTAACTATTCTTACCGTAGCAAACCTGTTGGGTGAA ACTATTTGGCGTATTCATGACGATAGTTCAGTCAGTAGTATTTTTCAGTGA
CDS sequence (LotjaGi4g1v0189800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCTTGGAACTTGGGAAGATTTCCATAAAGCGATTTGCAGATGGTGAAATCTATGTCCAGTTACAAGAGAGTGTTAG AGGTTGCAATGTATACCTTATACAGCCAACAAGCCCTCCTGCAAATGAGAATCTCATGGAGCTTCAAGTAATGATTGATG CTTGTAGGAGAGCATCAGCCAAGAATATCACTGCTGTGATTCCATACTTTGGATACGCCAGAGCAGATAGAAAGACTCAA GGACGTGAATCAATTGCCGCTAAACTTGTTGCAAACCTTATTACCAAAGCTGGGGCAGACCGTGTTCTTGCTTGTGACCT TCATTCAGGGCAGGCCATGGGTTACTTTGATATTCCTGTGGATCATGTACGATGCCAACCTGTGATCCTTGATTATCTTG CTAGCAAGACAATTAGTTCAAATGATTTGGTGGTTGTTTCCCCTGACGTTGGTGGTGTTGCAAGAGCTCGTGCTTTTGCA AAGAAATTATCTGATGCACCTTTAGCTATTGTAGACAAAAGGCGCCACGGGCACAATGTAGCTGAGGTGATGAACCTGAT TGGTGATGTAAAAGGAAAAGTTGCAGTAATGGTGGATGATATGATTGACACTGCTGGAACCATTGCAAAGGGTGCCGCAC TATTACATGAAGAGGGAGCCAGGGAAGTTTATGCATGCTGCACTCATGGTGTTTTTAGCCCTCCTGCAATTGAAAGGTTG TCCAGTGGCTTATTTCAAGAGGTGATTATTACAAACACCATTCCAGTTCCAGAGAAGAACTATTTCCCGCAGTTAACTAT TCTTACCGTAGCAAACCTGTTGGGTGAAACTATTTGGCGTATTCATGACGATAGTTCAGTCAGTAGTATTTTTCAGTGA
Protein sequence (LotjaGi4g1v0189800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLELGKISIKRFADGEIYVQLQESVRGCNVYLIQPTSPPANENLMELQVMIDACRRASAKNITAVIPYFGYARADRKTQ GRESIAAKLVANLITKAGADRVLACDLHSGQAMGYFDIPVDHVRCQPVILDYLASKTISSNDLVVVSPDVGGVARARAFA KKLSDAPLAIVDKRRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHEEGAREVYACCTHGVFSPPAIERL SSGLFQEVIITNTIPVPEKNYFPQLTILTVANLLGETIWRIHDDSSVSSIFQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 291 | 291 | 5.1E-202 | – | |
| Gene3D | 1 | 279 | 279 | 1.3E-115 | ||
| Hamap | 1 | 292 | 292 | 43.325 | ||
| PANTHER | 1 | 291 | 291 | 5.1E-202 | ||
| SMART | 1 | 98 | 98 | 7.6E-57 | – | |
| Pfam | 2 | 98 | 97 | 4.7E-41 | ||
| TIGRFAM | 2 | 292 | 291 | 1.1E-114 | ||
| SUPERFAMILY | 47 | 283 | 237 | 3.45E-61 | ||
| ProSitePatterns | 106 | 121 | 16 | - | ||
| Gene3D | 125 | 268 | 144 | 1.3E-115 | ||
| CDD | 141 | 253 | 113 | 3.4704E-24 | ||
| Pfam | 184 | 291 | 108 | 3.0E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
| Molecular function | Ribose phosphate diphosphokinase activity | Catalysis of the reaction: D-ribose 5-phosphate + ATP = 5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H(+). | ||
| Biological process | Nucleoside metabolic process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). | ||
| Biological process | Ribonucleoside monophosphate biosynthetic process | The chemical reactions and pathways resulting in the formation of a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar. | ||
| Biological process | Nucleotide biosynthetic process | The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). | ||
| Biological process | Cellular biosynthetic process | The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. |
Expression pattern of LotjaGi4g1v0189800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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