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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0190300 |
| Transcript ID | LotjaGi4g1v0190300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tobamovirus multiplication protein 2A; TAIR: AT1G32400.1 tobamovirus multiplication 2A; Swiss-Prot: sp|Q9C5W7|TOM2A_ARATH Tobamovirus multiplication protein 2A; TrEMBL-Plants: tr|I3SIX7|I3SIX7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0190300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:43608373..43613490) extracted from Lotus japonicus Gifu genome v1.2.
TGTGCTTGTAGGGGTTGCTGGGAGTGCCTTTTGAAGCTTTTGAACTTCTTATTGACCCTTGTTGGTCTGGCCATGGTGGG CTATGGGATTTACCTGCTGGTTGAATTCAGTAAAGCTTCAGATAACACTCTCAGTGTTTCTACTGTCAGTGATGATCAAA CTCTAGTTCAACTTGGCCGCCCCATGCTTATGGCTGTGTCTCTGTCCAACAGTTTCTTTGATGATTTGCCCAAGGCCTGG TATAAGTGCTGCTCTACTCAGCCGAATTTTTGGTGTATAGTAGTATGAATTGTTTGTAGCCTTATCGGGTATTATGTAAA CTGTAACACTGTTGTTTTTATAAGGAGTTTGCCACTGCAACAGCTTGCTGAATTTTATCTATTAATGAAATTTGTGCTGA AATTAGAGCCTGCCCTTTTTGGGGGGCTGGGGCTGGGTCAGTTTTCTCTAACATAGTACATCCAAGAGAAACTTTCAGCT TTCTGCCAGAGTTTGATAGGTAACCCCTTTTTTGAGTAGTTAGTTAGTTGTAGATTGTTTGTGAGGATTAGTTAGAGAGT GAGAGAGGGAATTTTATAAATAAAAGAGTTAGAAAGTATGATTATCTTTGGGATCATTTGTACCAAAAAAAATCTTCGGG ATCATTTGCAATTGGGCTCGAAAGATCTCTTGAATATCCGGGAATTTTAATTGTTTTGTCCTTCTTTAGTGATTTTTCCT ATCAAATTGGAATTAGAGCCCCATCTAGGTGCTATTGGGTGAATTGTAGTCGATGGTGGGCAAGAAAATAGAAGGGAGAC TTGAATCTTTGGAGAAATCATTAGAATCTCTAAACGAAAAATAGGGATAACGACCTGCATATTCAAGCCCAGTGGTTTAA GGTGCTTGAAAGGTGATTTCAGGTACAAGACCAGCTATTCCAGTAATTAGAATCAATGCCGGGAATTCTGCTTCATGGGA ATAAGCCTAACCTCAATCTTGGGGAAAGATCATGGAGTTCTGGGAAGCAGTAGGGAAAGGCGTGCAGGTCGATATGGTTA ATGAAGAAAAGGGAGAAGCAGGAATCAGAAGAAAGAATGAAGCTTCCGAGAACCAAGGCATCAACCTTTTGGGTCAACAA AAGACAACAACCACACACTGGGACAAAGCTTTGGGTTGGTGGTATGTCGTCCAAGCAGCCCCCGCTGAAGGCAATGGATG CCAACCCACATGGTAAGGCCTTGTTCCTTGTCAGGGTTGCCGTGGGCTGCAGCTTCTCTTTGGGCAGAGTTGCTAGTAGT GTGCGAGAAACATTTCAATGGCATCTCTGGGTCAAGAAGAACGAGAGGTGCGAGACTGGGATTGCTGATCAAGCGCCCAC CGTCAAAACCGCCTTAACCGCCTATGGTGCGAGTACAATGGGTATTGCTACTCCGGTGACAAAGTCAAGGTGAGGAGGGA TATGGCCCTGACACTCTTAAAACAGGAAGCTAATTTGTAAGAGGATTCGAGCACATGTGGGAGTGACGTCATATCAGCTG ACCAAGCGGCCACCACCAAAACTGCCTGATGTGAAGGCTTATACACCGGTTGTGTGACGTCATTAGCAACGATCACAAAG GGGACTGTTCGTTGAGGCAGAGAGACTCGTATAACAACTAGGGTGAGTTCCTTGGCAGAGAGGATTACAGGAGAAGAACT ACAGCTTGCGTGTATGACGACCCAACTTCTCCCACTAGAGCGACCAAACCCAAGTCATGGTGCGCAAGAGAAGTGTAATG TGGCGGCCGATAAGACACTTATAATTATGGAGCAATCAAATCTGGGGAGAACATATAGAAGAGGCGCCCATGACCAAATT TCAGACATCAGGTCAGTTTGGCCCATACTTAACTAAGAAGCTTCAAACCCAAGACCGACCTTGGTTCTATTTCTATTCCA TGAGTTGCTTCTGCACTTCGGGAGATGACACTGTATGCAATTTCACAAATTGGTCATTGGTGGAAGATTGTAGGCAGGAA TTGCAATACAGATAGGCCTCTTATTCTCAAATCTTAGCCTTGAGACATGGTGAATGTTCAAGTGGGAGAGTATTGGTAGG TAACCCCTTTCTTGCTTATTTAGTCCATTAGTAGATAGTTTGTGGGAGTTAGTTAGAGAGTGAGAGGGGAAATATTATAA ACAAGAGCGTTAGAGAGTACGATCATCTTTGGGATCAATTTGTAACTGTGCACTTCAGAGAGACCTCGATCTCTCGAATA TCCTGTAGTTTTAATAAATTTTCTTCAAGAAACAGTTCATACTTCTTCTTTAGTGCCTGTTCCTACCAGAGTTACTTAGG CCATAGGTATTAGACCTCTTAAATTTTAAATAACCTTTATTTCTTCCCCATGTACTGATTTTGGACCTACTGATGACATC TAGTTTTTTGTGTGACAGAGACAATCACTGACACGGCTACATGTAGTATTTTTAACCTGATAGTTTCTGTCTGCATTCAT CCTGATGGAATATTGTCTATTACACATTGCAGTATATTTTACCTGCTAGTTTCTATCTGCATTCACCCTGATGTAATATT TGCCTCAATACACATTGTTACTTTTACAAGACGCTTACACAGCTCATACTGTTGTCTTTGTACTTTTTTACACTTTGTGT ATTTCACGTTTTGCAGGTTTATTTACTTATTCATTGGAATAGGGGTAGTTCTCTTTGTCATTTCTTGTTTTGGTTGTATT GGAGCTATGACGCGGAGTGGCTGCTGCCTGAGCTGTGTATCCTTCCAGAATGTCTTATGCTATAGCTAAATAATTTTGTT CGGCTCATAATTTTTTTACTAGTATGCAAAAGCATCACTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC ACACACACACACACACACACACACACGCACACGCACACACACACTCTCACTCAGCGCTTTTCTGTATCTTTATTCATGGA TTAATCTTAAAGAAATGTGATTAGTTTTCCTTAAGCCAACAAAGTTTGCTGTTTTAGTGGTATTGTTGATCTTGGCAGAG CTGGGATGTGCAGCCTTTATATTTTTTGACAAAAGCTGGAAAAAGGCAAGCTCCGCTGGCAATGTATAATTTGAAATTCT AGAAGTTATAATTGTCCTCTTATGGTTATTTTCTTTCAGGAAATTCCGACAGACAAAACTGGAAATTTTGATATGATATA TGAATTTCTCAGAGAGAACTGGAATATTGTGAGATGGGTCGCTCTTGGAATTGTTATATTTGAGGTAAGTAAGAACTGTT ATATGATTGTCATTAAAAAAAAAGAAATATTGTTTTGGGGACATGAATCATGTATGGGTCCTTGTGCATGTACCCATAGG AGGGATTTTCAGTCCTGTCCTGCCGTAGTATGTGCTCCCCTTACAATATTACTGTCTTGACTTTGAAAGTTTCTTTCTGC TACTCTAAAAAATTTTATAGTACGATAGAGAACATATGCAATGCCATATGTTAAAATTTTAGTGGGAGGAACATATATTA GAGATGCACCAAAGATTTTTCTATACCCACAGGTAAGTTTTATATTTTTTTAGAATAAGTGCCTGCAAAGTGCCTTACCA TATTTCTTGGCTTACTGTGGTATAACTTCCAGTTCTCATATGTACATTAATGTATTATCACCATCCTGCTAATAGTTTCA TAGGAGTTACTTGTTGATGATAATATGATTTTTTTTCGCCAATTTTTGTAATACTTCTTTATTGATTTAAAGTACACTTT TAGGGATATAGTTCTATAGTGATGTAACTTTTTGAACAAGAAAAATAAATTCGGATTTTTGTTGATGCTAGGAGAAAGTG AAAATAGGAATAAGAGGGAGAGGAAAGACAGTATAGTGTTCTTCAACTTTGAAATTCAGAAATTTCAGAAACGAAGTGCC TGTCTCAAATTTACTTTACTGCATTGGACAAAATATCCTCTTACCACAGCTCACTTACCTACCACCAGGACTTAGGACTA GAGAAACCAACAGTGGAATAGCTTAGTATTTGTATGTGATACCATGAATGGGATGTGCCCATTGTTTTGTTCATGGAATT GCAGGCTCTTCTTTTTGTGTTAGCCCTTATTGTTCGGGCTGCAAATAGGCCAGCTGACTATGACAGTGATGAAGAATTCA TTAATCCTAGGCAGCAAGCCCGTCAGCCTTTGCTCAACAGACCAGCAGCTCCAGCATCAGGTGTACCAGTTGCGGGCACA ATTGATCAGCGTCCAAGCAGAAATGATGCATGGAGTACAAGGATGAGGGAGAAGGTGCAATATTTTGTCTCTGTAGTACT ATTTTGATGTGGAACTTTTCATCTGTTGGTCTTTACTGTGGTCTTATAGTGGTCAAGCTCTCTTAGGTGGAGGAGATTCA TGGTTCACTTGTCCAGTTGTCCTTTTACATAACAAGTGCAATTGTGTATCCCCTTCTTCCACTAGGGATACCTTAGCTAT TAGCTGGCTCACCTTATAATCTTTTAAAATTTAGTGATGTTTCATAGTCCTTTGAGGACTTACTTGCTATAATTTGGCCC TTTTAAAATATGTTCGAGTATCTTAAGTTTAGGTTTGGTTATCGTAAAAGATGCCATGAATGAATTAAAGGGAGCATACA AATATTTTTTTGCATTATTACAAGGTCTGAATATAATGACTTAGCTGAGCTAATTCAGTGTAGAAGTTTTTGAAAGTAGA AATCTCTGAATAAGCTTCCATTAAAAATATTCAATTAGATAGGGAAAAATCATCAAGGAAGTAACATAATACCTTTCCCT TACTGTCTTGTGTTCCTCGATTTAATGCAAAGCGGTATATCCTGTTTACATAGATATTATGCACGAACTGTCTTTTTGTC ATCGGAGTTTTGGACCATCTCTGGTTGTTGCATAAGAGATGATTGAAGAAGTTACCATTTTATTCTTGTTCTGTAAAATG ATCTTGGAATTTTTTATGGCTGTCTGACACTAATGCTGCTCCTTATGCAGTATGGGTTAGATACATCAGAATTCACATAC AACCCATCCGAGTCACAAAGGTTCCAGCAAGTGAACTCACAGCCAACTGAAGAAAGGAGCCGCTGCGCTATAATGTGA
CDS sequence (LotjaGi4g1v0190300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGGCTATGGGATTTACCTGCTGGTTGAATTCAGTAAAGCTTCAGATAACACTCTCAGTGTTTCTACTGTCAGTGA TGATCAAACTCTAGTTCAACTTGGCCGCCCCATGCTTATGGCTGTGTCTCTGTCCAACAGTTTCTTTGATGATTTGCCCA AGGCCTGGTTTATTTACTTATTCATTGGAATAGGGGTAGTTCTCTTTGTCATTTCTTGTTTTGGTTGTATTGGAGCTATG ACGCGGAGTGGCTGCTGCCTGAGCTGTTTTGCTGTTTTAGTGGTATTGTTGATCTTGGCAGAGCTGGGATGTGCAGCCTT TATATTTTTTGACAAAAGCTGGAAAAAGGAAATTCCGACAGACAAAACTGGAAATTTTGATATGATATATGAATTTCTCA GAGAGAACTGGAATATTGTGAGATGGGTCGCTCTTGGAATTGTTATATTTGAGGCTCTTCTTTTTGTGTTAGCCCTTATT GTTCGGGCTGCAAATAGGCCAGCTGACTATGACAGTGATGAAGAATTCATTAATCCTAGGCAGCAAGCCCGTCAGCCTTT GCTCAACAGACCAGCAGCTCCAGCATCAGGTGTACCAGTTGCGGGCACAATTGATCAGCGTCCAAGCAGAAATGATGCAT GGAGTACAAGGATGAGGGAGAAGTATGGGTTAGATACATCAGAATTCACATACAACCCATCCGAGTCACAAAGGTTCCAG CAAGTGAACTCACAGCCAACTGAAGAAAGGAGCCGCTGCGCTATAATGTGA
Protein sequence (LotjaGi4g1v0190300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGYGIYLLVEFSKASDNTLSVSTVSDDQTLVQLGRPMLMAVSLSNSFFDDLPKAWFIYLFIGIGVVLFVISCFGCIGAM TRSGCCLSCFAVLVVLLILAELGCAAFIFFDKSWKKEIPTDKTGNFDMIYEFLRENWNIVRWVALGIVIFEALLFVLALI VRAANRPADYDSDEEFINPRQQARQPLLNRPAAPASGVPVAGTIDQRPSRNDAWSTRMREKYGLDTSEFTYNPSESQRFQ QVNSQPTEERSRCAIM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 256 | 256 | 2.0E-128 | – | |
| PANTHER | 1 | 256 | 256 | 2.0E-128 | – | |
| Phobius | 1 | 55 | 55 | - | – | |
| Pfam | 52 | 114 | 63 | 9.3E-10 | ||
| PRINTS | 54 | 80 | 27 | 1.3E-8 | ||
| Phobius | 56 | 77 | 22 | - | – | |
| TMHMM | 56 | 78 | 23 | - | – | |
| Phobius | 78 | 88 | 11 | - | – | |
| PRINTS | 81 | 109 | 29 | 1.3E-8 | ||
| TMHMM | 87 | 109 | 23 | - | – | |
| Phobius | 89 | 110 | 22 | - | – | |
| Phobius | 111 | 138 | 28 | - | – | |
| TMHMM | 139 | 161 | 23 | - | – | |
| Phobius | 139 | 161 | 23 | - | – | |
| Phobius | 162 | 256 | 95 | - | – | |
| MobiDBLite | 190 | 210 | 21 | - | – | |
| MobiDBLite | 228 | 250 | 23 | - | – | |
| MobiDBLite | 228 | 256 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0190300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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