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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0190600 |
| Transcript ID | LotjaGi4g1v0190600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 55 like; TAIR: AT1G32410.1 Vacuolar protein sorting 55 (VPS55) family protein; Swiss-Prot: sp|Q9AST6|VSP55_ARATH Vacuolar protein sorting-associated protein 55 homolog; TrEMBL-Plants: tr|A0A061G3D7|A0A061G3D7_THECC Vacuolar protein sorting 55 (VPS55) family protein isoform 1; Found in the gene: LotjaGi4g1v0190600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:43674667..43676632) extracted from Lotus japonicus Gifu genome v1.2.
TCTACTTAAAAAATGAATTAAAACACCTGATAGATGCGTTCAGTTTGCACCGTTGGTACAATCTTAAAACATAATAGCTT TTTTACAGTTGCAGTGATTGCTTGCCACTGTCATTCAGTCAACCCGATTCTGACTGGTAGATGCACGTTTATGGAGTGGT TGTAACTTGTAACTTAGCACTAACAACGCCTTCAAAACGGTAGCAGCTGCAGACTGCAGTGCAAGAAAAAAGAAAATAAT CTCTTAGAAGAATCTATGGATATGAGGTATGAATTTCTCAAGCTCTCTTTTTCTCATATCTACAGTCTACACATAAAACA TGCTATGACTTTGTGCATTATTTTTCTATAATGTTTAGTTACTTTCAACTTTTGGGAATGAGGTAAAATAATACTGCTTT TAATATGGCTTTTGCTCTGTATTTGACATGATGAATTTGGACGGGGTTGTCTAAAGTGGAGTCTGATTTGCTTGTTCTTG TTCTTAGGCACGCAGATTTTATTTCTATGATCAATATGTGAGTTGAGACTTAATTATCACATTTTGAATAATGGATAAGG ATATAAACTGATGTTTATTAAATGATATCAACAATGTTATAACTGTTGTGTATCTTGAACTTAATGTTTTTGCTAGAATT GCTTCTTCATTTTGCATTTTCTTCAGATCTAATACTGTCATAGAAATATGATTATATTTTGCTTCAGCTATTCAGTCTTG TAACACGAGGTGAAATGGAGATGGCAGAGTTACCAGGACATTTTCGTTTCTGCTTGCACACTGGGAAACTTGTCCTTTTG GCAATTTTGGTCTCTGCAGGAGTCGTCCTGCAGATTTTGGTTAGTATTTATTTTTTCTTCATAGTTTATTATACCAAATC TTTTAACACAATTTTAATTTTAAGTGTTGATTTCTTAATCAATTTACCAACAAGGCCTAGCACAATTGGTAATTAAATTG TTGAGCTTTTTAAGCATTTAGTTCAGGATTCGATTCCAATGATTGAATTTTAACTGACATGATGCAATGTCATTGGTTGT GACAGGAAATGAGACAAGAGGATTTTAACCCCTAAAATGTTAACAAATTAAAAGACAACTTCATAGCAATATGCCACTGT TACTAATTACCTCTGTTCTATGTGGCAGGCATGTGCCTTGTATGATAATTGGTGGCCAATGCTAACTGGTGAGATAAACC ATCATTGTATTTGATTAATCCAGTATACTATATATAAAACTACTTGTTTTCATTTATTGGATTGTTATGTCATATGTGAC AAGCAGTTTTAATCTTTTTTTTTTTTTCTCTTGCAGCAATAACATATGTGCTTCTTCCAATGCCTTTGTTGTTCTTTGCT GCATCAGAACGTTCTTCTTTATTTTCTGAATCAGATAGCAGGTAAACCGTTGACTTTCCTAGTTCAAGATAGGGAATTGA ATATTTTTTTTTTTAATTTTGTGGTCTAATGAAATATGAATGATGGAGCATGCAGCTGGGTGAATGCAACCAAGTTCTTG GCAGGGGCGTCAGCTGTTGGAAGCATTGCAATTCCAGCCATATTAAAGCATTCTGGTGTTATTGGTTGGGGAGCTCTTGC AATGGATGTCTCTTCCTTCTTTGTCTTTGTATTTGCCATCATGTGCTACATTCGGATGAGTGGTGAATATGATTACCGTA TTATTTGAGATGGGAGCTTAGTGTGGCTTGCTATGTTAGTCTAATCACAAGAACTGATAAAACATGCATGGCTAATGACT ACTTTGTATCATTCATATTGTTTTATAATTCAACTCTAAACTCTAATCCATGAGTTATCTCATCCATTATGCAAGGTGAC ATGGCTAAAGACCATGAAGTAAATTTGTGAATGGGGCAATTATCTTACTTCTTGTCTCATAGGATTTCTGTATTGCTTTT TTCTTATACAAAGGATTTCTGTATAGCTATAATATCAAAATAAAAC
CDS sequence (LotjaGi4g1v0190600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGATGGCAGAGTTACCAGGACATTTTCGTTTCTGCTTGCACACTGGGAAACTTGTCCTTTTGGCAATTTTGGTCTC TGCAGGAGTCGTCCTGCAGATTTTGGCATGTGCCTTGTATGATAATTGGTGGCCAATGCTAACTGCAATAACATATGTGC TTCTTCCAATGCCTTTGTTGTTCTTTGCTGCATCAGAACGTTCTTCTTTATTTTCTGAATCAGATAGCAGCTGGGTGAAT GCAACCAAGTTCTTGGCAGGGGCGTCAGCTGTTGGAAGCATTGCAATTCCAGCCATATTAAAGCATTCTGGTGTTATTGG TTGGGGAGCTCTTGCAATGGATGTCTCTTCCTTCTTTGTCTTTGTATTTGCCATCATGTGCTACATTCGGATGAGTGGTG AATATGATTACCGTATTATTTGA
Protein sequence (LotjaGi4g1v0190600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEMAELPGHFRFCLHTGKLVLLAILVSAGVVLQILACALYDNWWPMLTAITYVLLPMPLLFFAASERSSLFSESDSSWVN ATKFLAGASAVGSIAIPAILKHSGVIGWGALAMDVSSFFVFVFAIMCYIRMSGEYDYRII
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 3 | 137 | 135 | 2.0E-71 | – | |
| PANTHER | 3 | 137 | 135 | 2.0E-71 | ||
| Phobius | 12 | 36 | 25 | - | – | |
| Pfam | 19 | 133 | 115 | 1.6E-32 | ||
| TMHMM | 20 | 39 | 20 | - | – | |
| Phobius | 37 | 41 | 5 | - | – | |
| Phobius | 42 | 63 | 22 | - | – | |
| TMHMM | 43 | 65 | 23 | - | – | |
| Phobius | 64 | 83 | 20 | - | – | |
| TMHMM | 78 | 100 | 23 | - | – | |
| Phobius | 84 | 100 | 17 | - | – | |
| Phobius | 101 | 105 | 5 | - | – | |
| TMHMM | 105 | 127 | 23 | - | – | |
| Phobius | 106 | 129 | 24 | - | – | |
| Phobius | 130 | 140 | 11 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0190600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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