Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0193500 |
| Transcript ID | LotjaGi4g1v0193500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin domain protein; TAIR: AT5G16920.1 Fasciclin-like arabinogalactan family protein; Swiss-Prot: sp|P0DH64|Y4891_SELML FAS1 domain-containing protein SELMODRAFT_448915; TrEMBL-Plants: tr|A0A0R0FDM5|A0A0R0FDM5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0193500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:44484933..44486218) extracted from Lotus japonicus Gifu genome v1.2.
TAACCATTAAGAGATAGAATGTCTTCTTCAAATTAAGAAGGAAATTTTTATTTAACATATTGTTTGGTTGGAGGGGAATG GAGGGAGAGGATGGGAATGTCTTCTTCTAAACAGAGCGTAAGTCAAATGTTAAAATCAGCACTTAGGGTCATAAACGGTG TATCTATTAAAACCAATTTGGTTGACTCCTGCAAGAAGATTCAGGTTAGGCTATGAAATTGAATTTATCTGTATACCATA ATAATCTAAACCCACTTCCATTACCCAAATTTTGGTGCCACCTTAATCACACTTGCTACAAGTTTGATCTTCCAATCATC TAGGAAGTGTGTGAGGCTTAGTTGGTAAAGCATCATCTTTGCATGTCCACACAAAAAATTCACCCTGTCCTCATTCAATC TATCAGAATCCAGAATACCCTTTTCATGATAAAACCAAACTCATTCTAAAGAGGAGTCAAATCAAGCAAATTGCAGAAAA CATCACAATGGAAGGCAAGGTGTTCTTAGTGACTTTGCTCCTATTGTTGCTGATTTCATCAGTAACCCCAACAGATAACC AAAATCTTCTTGCAGCCACTGAGGAGATGCAAAGAGCAAACTACTTTACCTTTGTAATGCTCGTCAAAATGTCCCAACCA GACACAAGGCTTGAAGGGAACGTTACTTTCTTGATGCCCAATGACCGAATGCTCGCGAACATGAATTTGCAAGAAGGATA TGTTTCAAGCTTCTTGCTCAGGCATTCAATACCATCACCTTTGCTCTTTGGTACCTTGGAACAGTTCCCAACAGGGACTA CAATTCCAACTTCATTGCCAAATTGCATGCTGAGAATCTCTAACAATGGTAGGAGGAATTTTGCACTCAACAATGTGAAA ATTATCAGTCCAAATTTATGTGTTGCTGGATCTTCAATTAGATGTCATGGCATTGATGGTGTAATCTCAGAATCTTGTAT ATCAGTTTATAATAACTATAGTGCTCCTCTTGCTCCATCTCCAATTCCATGTCCTAACATCACAGACCCTTCTTATAAGG CCTCACCTCCAATTCCATCTCCTTCACTCCCTTCAGCTCCTCCTAGTAGAGACAACCTTAGTCCTCCAACATTAATAGCC CCAAACCCAACAGAGGCAAATATTAGGCCAGAGAAATCAGGGTCTCCCAACAAAGTTTCTTATTATGGTTCATTGAGTTT TGTCACCTGTTTGATGATATCTCTAATTGTAATTGGGTTCAACTTTTAATTTAACCAATTCAATTCAATATTTTATTTTG ATCAGT
CDS sequence (LotjaGi4g1v0193500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGCAAGGTGTTCTTAGTGACTTTGCTCCTATTGTTGCTGATTTCATCAGTAACCCCAACAGATAACCAAAATCT TCTTGCAGCCACTGAGGAGATGCAAAGAGCAAACTACTTTACCTTTGTAATGCTCGTCAAAATGTCCCAACCAGACACAA GGCTTGAAGGGAACGTTACTTTCTTGATGCCCAATGACCGAATGCTCGCGAACATGAATTTGCAAGAAGGATATGTTTCA AGCTTCTTGCTCAGGCATTCAATACCATCACCTTTGCTCTTTGGTACCTTGGAACAGTTCCCAACAGGGACTACAATTCC AACTTCATTGCCAAATTGCATGCTGAGAATCTCTAACAATGGTAGGAGGAATTTTGCACTCAACAATGTGAAAATTATCA GTCCAAATTTATGTGTTGCTGGATCTTCAATTAGATGTCATGGCATTGATGGTGTAATCTCAGAATCTTGTATATCAGTT TATAATAACTATAGTGCTCCTCTTGCTCCATCTCCAATTCCATGTCCTAACATCACAGACCCTTCTTATAAGGCCTCACC TCCAATTCCATCTCCTTCACTCCCTTCAGCTCCTCCTAGTAGAGACAACCTTAGTCCTCCAACATTAATAGCCCCAAACC CAACAGAGGCAAATATTAGGCCAGAGAAATCAGGGTCTCCCAACAAAGTTTCTTATTATGGTTCATTGAGTTTTGTCACC TGTTTGATGATATCTCTAATTGTAATTGGGTTCAACTTTTAA
Protein sequence (LotjaGi4g1v0193500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGKVFLVTLLLLLLISSVTPTDNQNLLAATEEMQRANYFTFVMLVKMSQPDTRLEGNVTFLMPNDRMLANMNLQEGYVS SFLLRHSIPSPLLFGTLEQFPTGTTIPTSLPNCMLRISNNGRRNFALNNVKIISPNLCVAGSSIRCHGIDGVISESCISV YNNYSAPLAPSPIPCPNITDPSYKASPPIPSPSLPSAPPSRDNLSPPTLIAPNPTEANIRPEKSGSPNKVSYYGSLSFVT CLMISLIVIGFNF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| PANTHER | 8 | 244 | 237 | 4.0E-81 | – | |
| PANTHER | 8 | 244 | 237 | 4.0E-81 | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 229 | 208 | - | – | |
| Pfam | 38 | 153 | 116 | 1.2E-6 | ||
| SUPERFAMILY | 38 | 153 | 116 | 6.8E-7 | ||
| SMART | 60 | 156 | 97 | 0.001 | ||
| MobiDBLite | 185 | 226 | 42 | - | – | |
| MobiDBLite | 185 | 202 | 18 | - | – | |
| TMHMM | 230 | 252 | 23 | - | – | |
| Phobius | 230 | 251 | 22 | - | – | |
| Phobius | 252 | 253 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0193500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…