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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0194100 |
| Transcript ID | LotjaGi4g1v0194100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G17616.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|B3H672|PP317_ARATH Pentatricopeptide repeat-containing protein At4g17616; TrEMBL-Plants: tr|K7MLR1|K7MLR1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0194100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:44669943..44672669) extracted from Lotus japonicus Gifu genome v1.2.
ATTTGCTCTTCATCTATGTTATGGCATTAAGTCTTTGCTCAAGGCCAAGGGTTTAGCATTCAATTCAATACTAGTCAGAA AATTGTTATGCTTCGTCTTCGCCACCTCTTCAAATCGAAAATTCATCAACATTTTCTTGCTAAACTGTGCGAAATTTCGC TCCTTGAACACCAAGTAGAAATTTTTCACTCTGCATTGCATTTGTATGCATAATAGGTAAAGCTCAAATAGCACAGGCAT GGTGGCGGCATGGTGCTCCCTTTCACCAAACACATTCTCTCACGCAACCACTGGGTCCAAAAGCCTCCACCTTTACTCGC AATTCTTCGTGGGCATGTCAGTTTTGGTTTCCTGCAACATTTTTCCAGTTCTGGGTACTGTGAAAGACTACCATGGGAAC GTTCCACCGAAGAAATTCTATTGGGGAAGCTTAAATCTGCTTTGAGGAGTCATCAGGTGCATGAAGCTTGGGAATCTTTT CAGGATTTTAGAACCCTTTATGGGTACCCTGAGGTTCACCTTGTGAACCGTCTCATTGTTCAGTCTTCATATTCAAATGA TCATGTTTGGATAAGAAAAGCATGTGATTTGGCTTTGCAGATTGTTGAAGAGAAGTCAGGTTTGCTTCAATCTGATGGCT TAATTAAGCTTGCTTTGTCTCTAGCTAGGTTGCAAATGCTATCTCATGTTTCTGTGATACTTAGGTTGATGCTTAACAAA GGGTGTGTGCCCCCAATGAATTTATTGTCTTTGGTGGTTTTTCATGTTGTGAAGACTGAAATCGGAACACAGATAGCATC CAATTATCTGTCTCAAGTTTGTGATTTTTATAATTGCTTGAATGATAAAAAATCTCACCTTGCTGTCATGGTTAAGCTGG ATACCGTGGTCTTTAACCTTGTTCTTGATGCTTGTGTGAGGTTTAAATTGTCTTTGAAAGGCCTGTGCCTGATTGAATTG ATGGCGATGACTGGGACGGTGGCTGATGCACACTCCATTGTGTTAATTTCGCAGATCCTAGAGATGAATGGTTTGAGAGA TGAAATGATGGAGCTAAAAGGTCATATTGATGGAGTTTCGGCTGCTTATGCTCGTCACTATAGCCAGTTTTATGATAGTT TGTTGAGCTTGCACTTCAAATTTAATGACATTGATGCTGCTGCTAAGCTTGTTTTGGATATGAATAGGTTGCGTGATTGT CATATTAGTAAAGAGTGTACGAAACGCTTGCAAAAGCCTTGTTTTATTGGCATTGGATCATCTAACCTTAAGAACGGGTT GAAGATACATATTGAGCCTGAGCTACTGCAGAAGGATTCTGTCCTTAAAGTGGAAGGGAGACAGAATCTTATCTTTTATA AGGGTGGGAAACTTGCTCTCAGTAACAGAGCTATGGTCATGTTTATCTGTGGTTACAAGAAAGATGGGCAGATTAGTGAA CTTTCAAAACTCTTACTTAGCCTTCAAGAGGGACTATATGCAGTTGCAGGTTCCAGTTTGTGTTCTGATGTGATCGGTGC TTGCATTCAGATGGGATGGCTTGAGTCTGCTCATGACATTTTGGATGATGTAGAGGCTACTGGGTCTCCAATGGGCCGGG AGACATATATGTTACTCTTGTCAGCATATCAGAATGGGGGAATGCAAAGAGAAGCGAAAGCACTGCTAAAACAAATGAAA AAGGTTAGTTTGCACCACAAATTGTCTGATGATGCTTTTGACAAGCACATCATCTGTGAAGAAACAGCATACTCAGTTGG TAAATCAGACTTGGCTGTCGCCTTGGCTCAAATTTTGAAAGGTGAAGATCAAACAGTTTTACCTTTGGTGTACAACTTCA ATTCTTCCATTTTCTTTTTCTGCAAGGCAGGAATGATAGAGGATGCACTGAAGGCGTATAGAAGAATGGGCAAAATGAAA ATTCAACCCACAATTCAAACTTTTGCTTATATGCTGTGTGGATATTCTTCTCTTGGCATGTATCGTGAAATCACTATCGT GTGGGGAGACATTAAGAGACTCATGAAGGGTGCCGATTTAGTTGGAAATAGAGATTTGTATGAGTTATTGCTCCTAAACT TTTTACGTGGTGGTTACTTTGAGAGAGTGATGGAGGTCATTGATCATATGAGAAACCATAACATGTATACTGACAAATGG ATGTACAAAAGTGAGTTCCTTAGACTTCATAAGAATCTTTATAGGCGTTTAAAAGCATCAGATGCTAGAACAGAAGCACA AAGCAAAAGGTTTGAGCATGTTCAGGAATTTCAGAAATGGGTGGGTATTGACTAAAGGTCTCTGCTTAACGTTCATGCGC TGATGTACTCTATCTTTTTCAGTAATGGGCATTGGAAAATTATGTCGTCTTATGCCTATTTGAAGTTTATTTAGTTTTGG TTCTGGCTAAGTTTAGCATTCTTGGAGTTAGGTGGAAATTTTTGTTTCAGTAGTCACTAACCCTACCATGACCATAATTT ATAAGAATGAATTTCCTCATACTGATGGTGTAGGAACCTAATTTGAAGTGGGTCCATCATATGGTCTCTCATACTCATTA GCTCTATTAAGTTGTGGATACTGGTAATTGATGATATGCTGTTTTTAGGTTCTCTAGAGTGAGCTCTCACCATTGTTAAG GGAGGAGTTTGGTTAACATTTGCAGATAGAGTATGGAACAGTGAATGGTCACATGACCCTTTTTATAACTGAAATTCTCG ATCGTTA
CDS sequence (LotjaGi4g1v0194100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCTCCCTTTCACCAAACACATTCTCTCACGCAACCACTGGGTCCAAAAGCCTCCACCTTTACTCGCAATTCTTCG TGGGCATGTCAGTTTTGGTTTCCTGCAACATTTTTCCAGTTCTGGGTACTGTGAAAGACTACCATGGGAACGTTCCACCG AAGAAATTCTATTGGGGAAGCTTAAATCTGCTTTGAGGAGTCATCAGGTGCATGAAGCTTGGGAATCTTTTCAGGATTTT AGAACCCTTTATGGGTACCCTGAGGTTCACCTTGTGAACCGTCTCATTGTTCAGTCTTCATATTCAAATGATCATGTTTG GATAAGAAAAGCATGTGATTTGGCTTTGCAGATTGTTGAAGAGAAGTCAGGTTTGCTTCAATCTGATGGCTTAATTAAGC TTGCTTTGTCTCTAGCTAGGTTGCAAATGCTATCTCATGTTTCTGTGATACTTAGGTTGATGCTTAACAAAGGGTGTGTG CCCCCAATGAATTTATTGTCTTTGGTGGTTTTTCATGTTGTGAAGACTGAAATCGGAACACAGATAGCATCCAATTATCT GTCTCAAGTTTGTGATTTTTATAATTGCTTGAATGATAAAAAATCTCACCTTGCTGTCATGGTTAAGCTGGATACCGTGG TCTTTAACCTTGTTCTTGATGCTTGTGTGAGGTTTAAATTGTCTTTGAAAGGCCTGTGCCTGATTGAATTGATGGCGATG ACTGGGACGGTGGCTGATGCACACTCCATTGTGTTAATTTCGCAGATCCTAGAGATGAATGGTTTGAGAGATGAAATGAT GGAGCTAAAAGGTCATATTGATGGAGTTTCGGCTGCTTATGCTCGTCACTATAGCCAGTTTTATGATAGTTTGTTGAGCT TGCACTTCAAATTTAATGACATTGATGCTGCTGCTAAGCTTGTTTTGGATATGAATAGGTTGCGTGATTGTCATATTAGT AAAGAGTGTACGAAACGCTTGCAAAAGCCTTGTTTTATTGGCATTGGATCATCTAACCTTAAGAACGGGTTGAAGATACA TATTGAGCCTGAGCTACTGCAGAAGGATTCTGTCCTTAAAGTGGAAGGGAGACAGAATCTTATCTTTTATAAGGGTGGGA AACTTGCTCTCAGTAACAGAGCTATGGTCATGTTTATCTGTGGTTACAAGAAAGATGGGCAGATTAGTGAACTTTCAAAA CTCTTACTTAGCCTTCAAGAGGGACTATATGCAGTTGCAGGTTCCAGTTTGTGTTCTGATGTGATCGGTGCTTGCATTCA GATGGGATGGCTTGAGTCTGCTCATGACATTTTGGATGATGTAGAGGCTACTGGGTCTCCAATGGGCCGGGAGACATATA TGTTACTCTTGTCAGCATATCAGAATGGGGGAATGCAAAGAGAAGCGAAAGCACTGCTAAAACAAATGAAAAAGGTTAGT TTGCACCACAAATTGTCTGATGATGCTTTTGACAAGCACATCATCTGTGAAGAAACAGCATACTCAGTTGGTAAATCAGA CTTGGCTGTCGCCTTGGCTCAAATTTTGAAAGGTGAAGATCAAACAGTTTTACCTTTGGTGTACAACTTCAATTCTTCCA TTTTCTTTTTCTGCAAGGCAGGAATGATAGAGGATGCACTGAAGGCGTATAGAAGAATGGGCAAAATGAAAATTCAACCC ACAATTCAAACTTTTGCTTATATGCTGTGTGGATATTCTTCTCTTGGCATGTATCGTGAAATCACTATCGTGTGGGGAGA CATTAAGAGACTCATGAAGGGTGCCGATTTAGTTGGAAATAGAGATTTGTATGAGTTATTGCTCCTAAACTTTTTACGTG GTGGTTACTTTGAGAGAGTGATGGAGGTCATTGATCATATGAGAAACCATAACATGTATACTGACAAATGGATGTACAAA AGTGAGTTCCTTAGACTTCATAAGAATCTTTATAGGCGTTTAAAAGCATCAGATGCTAGAACAGAAGCACAAAGCAAAAG GTTTGAGCATGTTCAGGAATTTCAGAAATGGGTGGGTATTGACTAA
Protein sequence (LotjaGi4g1v0194100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLPFTKHILSRNHWVQKPPPLLAILRGHVSFGFLQHFSSSGYCERLPWERSTEEILLGKLKSALRSHQVHEAWESFQDF RTLYGYPEVHLVNRLIVQSSYSNDHVWIRKACDLALQIVEEKSGLLQSDGLIKLALSLARLQMLSHVSVILRLMLNKGCV PPMNLLSLVVFHVVKTEIGTQIASNYLSQVCDFYNCLNDKKSHLAVMVKLDTVVFNLVLDACVRFKLSLKGLCLIELMAM TGTVADAHSIVLISQILEMNGLRDEMMELKGHIDGVSAAYARHYSQFYDSLLSLHFKFNDIDAAAKLVLDMNRLRDCHIS KECTKRLQKPCFIGIGSSNLKNGLKIHIEPELLQKDSVLKVEGRQNLIFYKGGKLALSNRAMVMFICGYKKDGQISELSK LLLSLQEGLYAVAGSSLCSDVIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMKKVS LHHKLSDDAFDKHIICEETAYSVGKSDLAVALAQILKGEDQTVLPLVYNFNSSIFFFCKAGMIEDALKAYRRMGKMKIQP TIQTFAYMLCGYSSLGMYREITIVWGDIKRLMKGADLVGNRDLYELLLLNFLRGGYFERVMEVIDHMRNHNMYTDKWMYK SEFLRLHKNLYRRLKASDARTEAQSKRFEHVQEFQKWVGID
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 36 | 681 | 646 | 2.7E-293 | – | |
| PANTHER | 36 | 681 | 646 | 2.7E-293 | – | |
| ProSiteProfiles | 127 | 161 | 35 | 5.251 | ||
| ProSiteProfiles | 211 | 245 | 35 | 6.818 | ||
| ProSiteProfiles | 284 | 314 | 31 | 5.152 | ||
| ProSiteProfiles | 414 | 448 | 35 | 6.522 | ||
| ProSiteProfiles | 449 | 483 | 35 | 7.848 | ||
| Gene3D | 503 | 681 | 179 | 1.6E-14 | ||
| ProSiteProfiles | 526 | 560 | 35 | 9.295 | ||
| Pfam | 527 | 573 | 47 | 2.5E-7 | ||
| TIGRFAM | 537 | 561 | 25 | 2.7E-4 | ||
| ProSiteProfiles | 561 | 591 | 31 | 5.656 | ||
| ProSiteProfiles | 600 | 634 | 35 | 7.278 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0194100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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